.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (BVT_FFPE_TRNA_stm_06_A23WKFTLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/fea2ec83453094a5c53aeb72d47691/.command.sh
Size: 433 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (BVT_FFPE_TRNA_stm_06_A23WKFTLT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
contamination_to_multiqc.py \
    "BVT_FFPE_TRNA_stm_06_A23WKFTLT4_1.predictions.csv" \
    --output "BVT_FFPE_TRNA_stm_06_A23WKFTLT4_1_contamination_mqc.tsv" \
    --sample-id "BVT_FFPE_TRNA_stm_06_A23WKFTLT4_1"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    contamination_to_multiqc: 1.0.0
END_VERSIONS