Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/591c69737ed2e0027e5c904916d274/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/be1bc695a2d3bbaa4b3a862b30fbe0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/be1bc695a2d3bbaa4b3a862b30fbe0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/9687b3df0be750acfbc72eb2eaf716/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3/abundance.h5
Successfully converted BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3/abundance.h5 to BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3
  Mean Fragment Length: 119.1 bp
  Median Fragment Length: 113.0 bp
  pct_mito_est_counts: 0.003%
  pct_ribo_est_counts: 0.891%
  pct_hk_est_counts: 0.498%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.007%
  pct_ribo_tpm: 2.751%
  pct_hk_tpm: 0.767%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.079%