Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/97aa664f474c34dd7fb44b2665f747/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/97aa664f474c34dd7fb44b2665f747/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/55ba7cb76d62f563f9e9f01f19fdf8/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/7ba4a71cca83f6facee8a0767ba77f/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 282076562
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	282076562
Known Splicing Events:	279038203
Partial Novel Splicing Events:	1373477
Novel Splicing Events:	1480444
Filtered Splicing Events:	184438

Total splicing  Junctions:	333137
Known Splicing Junctions:	208515
Partial Novel Splicing Junctions:	56316
Novel Splicing Junctions:	68306

===================================================================
Create BED file ...
Create Interact file ...