Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/96875b26af428def9bf5bfba586a4a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/58c38a70630532a4536ee13bd4f3b8/BVT_FFPE_TRNA_utn_05_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/96875b26af428def9bf5bfba586a4a/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 209079830
unpaired = 4429366
MERGED PAIRED END READS = 209079830
MATES PROCESSED = 422589026
TOTAL READS     = 213509196
DISTINCT READS  = 2.91791e+07
DISTINCT COUNTS = 1096
MAX COUNT       = 855154
COUNTS OF 1     = 5.43781e+06
MAX TERMS       = 100
OBSERVED COUNTS (855155)
1	5437806
2	3065353
3	2638056
4	2384109
5	2149617
6	1914922
7	1685086
8	1462895
9	1258955
10	1073940
11	911047
12	766953
13	644147
14	540753
15	453620
16	378747
17	316934
18	266627
19	224706
20	189359
21	160962
22	136231
23	117054
24	100217
25	86382
26	75074
27	65187
28	57607
29	51041
30	45000
31	40057
32	35934
33	32054
34	29102
35	26095
36	23985
37	21679
38	19834
39	18166
40	16698
41	15187
42	13758
43	13146
44	11660
45	10850
46	10241
47	9531
48	8905
49	7961
50	7619
51	7099
52	6629
53	6177
54	5781
55	5331
56	4991
57	4604
58	4374
59	4048
60	3903
61	3616
62	3488
63	3267
64	3033
65	2851
66	2692
67	2496
68	2440
69	2318
70	2214
71	2039
72	1892
73	1831
74	1769
75	1713
76	1589
77	1581
78	1434
79	1364
80	1317
81	1242
82	1240
83	1201
84	1073
85	1118
86	1058
87	1031
88	985
89	942
90	918
91	867
92	905
93	799
94	845
95	791
96	747
97	761
98	701
99	731
100	656
101	670
102	625
103	631
104	601
105	551
106	579
107	517
108	543
109	523
110	522
111	423
112	471
113	445
114	423
115	386
116	422
117	407
118	399
119	413
120	374
121	351
122	355
123	324
124	331
125	302
126	325
127	313
128	341
129	311
130	337
131	259
132	271
133	235
134	259
135	255
136	291
137	234
138	258
139	235
140	263
141	227
142	219
143	217
144	218
145	205
146	199
147	214
148	200
149	203
150	202
151	183
152	222
153	189
154	174
155	175
156	159
157	195
158	160
159	151
160	166
161	154
162	140
163	142
164	154
165	138
166	133
167	139
168	128
169	120
170	136
171	130
172	133
173	129
174	126
175	121
176	115
177	124
178	96
179	113
180	124
181	127
182	103
183	98
184	111
185	106
186	92
187	90
188	77
189	97
190	96
191	102
192	86
193	90
194	88
195	83
196	79
197	84
198	96
199	78
200	78
201	79
202	79
203	67
204	85
205	84
206	70
207	74
208	77
209	70
210	65
211	66
212	52
213	66
214	60
215	66
216	70
217	59
218	54
219	78
220	61
221	58
222	56
223	40
224	51
225	55
226	43
227	67
228	59
229	50
230	60
231	40
232	40
233	53
234	41
235	48
236	56
237	45
238	43
239	52
240	42
241	49
242	44
243	40
244	44
245	47
246	43
247	43
248	43
249	30
250	35
251	39
252	31
253	50
254	49
255	40
256	44
257	39
258	41
259	36
260	42
261	41
262	33
263	22
264	36
265	19
266	29
267	28
268	39
269	30
270	37
271	29
272	32
273	37
274	33
275	37
276	38
277	25
278	24
279	25
280	27
281	32
282	22
283	29
284	19
285	27
286	33
287	27
288	22
289	31
290	21
291	31
292	22
293	17
294	23
295	18
296	25
297	24
298	19
299	26
300	23
301	15
302	22
303	17
304	21
305	23
306	24
307	27
308	21
309	20
310	13
311	13
312	27
313	20
314	17
315	15
316	24
317	21
318	21
319	18
320	16
321	36
322	19
323	16
324	15
325	26
326	11
327	20
328	22
329	17
330	20
331	14
332	19
333	18
334	24
335	19
336	16
337	18
338	15
339	18
340	20
341	13
342	13
343	14
344	20
345	13
346	13
347	18
348	15
349	20
350	20
351	13
352	17
353	18
354	19
355	13
356	20
357	18
358	8
359	19
360	9
361	20
362	19
363	9
364	11
365	12
366	13
367	13
368	16
369	13
370	12
371	10
372	18
373	10
374	6
375	13
376	9
377	15
378	6
379	14
380	17
381	8
382	7
383	13
384	12
385	14
386	18
387	16
388	15
389	18
390	16
391	13
392	13
393	9
394	12
395	8
396	10
397	12
398	9
399	12
400	12
401	7
402	6
403	9
404	7
405	7
406	10
407	7
408	11
409	3
410	12
411	5
412	11
413	12
414	9
415	6
416	6
417	9
418	8
419	8
420	6
421	6
422	8
423	4
424	6
425	8
426	11
427	5
428	7
429	8
430	9
431	11
432	9
433	7
434	2
435	8
436	2
437	7
438	5
439	7
440	2
441	4
442	5
443	12
444	7
445	7
446	9
447	8
448	10
449	8
450	1
451	6
452	5
453	8
454	2
455	10
456	7
457	3
458	8
459	9
460	6
461	6
462	5
463	3
464	6
465	12
466	8
467	6
468	5
469	6
470	6
471	7
472	8
473	4
474	7
475	8
476	3
477	6
478	8
479	9
480	7
481	4
482	5
483	4
484	4
485	7
486	7
487	4
488	2
489	2
490	6
491	4
492	4
493	3
494	6
495	6
496	4
497	2
498	7
499	4
500	8
501	1
502	9
503	4
504	5
505	3
506	2
507	4
508	9
509	8
510	3
511	4
512	1
513	5
514	8
515	2
516	5
517	7
518	4
519	6
520	4
521	6
522	2
523	2
524	2
525	5
526	7
527	2
528	10
529	3
530	4
531	2
532	3
533	2
534	1
535	2
536	5
537	3
538	4
539	4
540	5
541	4
542	1
543	3
544	3
545	5
546	2
547	3
548	4
549	5
550	4
551	4
552	5
553	2
554	3
555	6
556	5
557	4
558	3
559	3
560	2
561	4
562	2
563	4
564	4
565	3
566	3
567	4
568	6
569	4
570	5
571	4
572	5
573	1
574	4
575	4
576	2
577	1
578	4
579	3
580	2
581	3
582	6
583	5
584	4
585	2
586	1
587	2
588	2
589	4
590	2
591	1
592	1
593	7
594	4
595	3
596	2
597	1
598	4
599	2
600	3
601	4
602	5
603	4
604	2
605	2
606	3
607	4
608	2
610	1
611	2
612	3
613	1
614	5
615	2
616	2
617	7
618	2
619	4
620	1
621	1
622	3
623	3
624	1
625	2
626	3
627	4
628	4
630	1
631	1
632	1
634	1
636	1
637	1
638	2
639	2
640	2
641	3
642	3
643	4
644	1
645	4
646	2
647	2
648	2
649	1
650	4
651	1
652	2
654	2
655	1
656	2
657	1
658	5
659	3
660	5
662	4
663	1
665	3
666	2
667	1
668	3
669	3
670	2
671	4
672	3
673	5
674	1
675	2
676	1
677	1
679	1
680	4
681	1
682	4
683	1
684	3
685	1
686	3
687	2
688	2
689	1
690	2
691	2
692	2
693	2
694	2
696	1
697	1
699	2
700	1
701	1
702	2
703	2
704	1
705	3
706	4
707	3
708	1
709	2
712	1
713	1
714	1
715	1
716	2
717	2
718	2
719	1
720	1
723	2
724	3
725	1
726	1
727	2
728	1
729	2
732	1
733	1
734	4
736	2
737	1
738	2
740	2
741	1
742	3
743	1
744	1
746	3
748	1
749	1
751	1
752	2
753	2
754	2
757	1
758	1
759	2
760	2
761	1
763	3
764	3
766	2
767	3
768	2
769	1
771	2
772	1
773	1
774	1
775	1
776	2
777	2
779	1
780	1
783	2
785	1
786	2
787	1
788	2
789	1
790	1
792	2
793	2
794	1
797	2
799	1
800	2
801	1
802	1
803	3
804	1
805	2
806	1
807	4
810	1
812	1
813	1
815	1
816	1
817	1
818	1
819	2
820	1
821	1
823	1
824	1
825	1
826	2
831	1
832	1
833	1
834	1
835	1
836	1
838	1
840	3
842	2
844	2
845	1
846	3
847	1
849	1
850	2
851	2
855	1
856	1
857	1
858	1
859	2
860	1
868	1
869	1
872	1
875	2
879	1
880	1
884	1
885	1
886	2
889	1
891	3
894	1
897	1
898	1
900	1
902	1
903	1
904	1
907	1
908	2
913	3
914	1
915	1
916	1
918	2
919	1
920	1
923	1
925	2
929	1
930	1
932	1
933	1
936	1
937	3
938	1
941	2
942	1
943	1
944	2
945	1
948	1
950	4
951	1
952	2
953	1
956	1
957	1
958	2
960	1
962	1
965	1
973	2
974	1
975	1
978	1
979	1
984	1
990	1
991	1
992	1
996	2
997	1
998	1
999	1
1003	1
1005	1
1006	2
1008	1
1009	2
1012	1
1013	1
1015	1
1016	1
1021	1
1030	1
1031	1
1034	1
1036	1
1044	1
1048	2
1049	1
1050	1
1051	1
1055	1
1056	2
1060	1
1064	1
1065	1
1066	1
1067	1
1070	1
1071	2
1072	1
1075	1
1076	1
1078	1
1079	2
1083	1
1084	1
1089	1
1093	1
1097	1
1101	1
1105	1
1112	1
1113	1
1114	1
1115	1
1120	1
1124	1
1125	1
1126	1
1132	1
1133	1
1138	1
1143	1
1146	1
1151	1
1153	1
1155	1
1156	1
1157	1
1158	1
1161	3
1173	1
1174	1
1175	1
1179	1
1182	1
1183	1
1185	1
1186	1
1194	1
1195	1
1196	1
1198	1
1200	1
1202	2
1209	1
1211	1
1217	1
1220	1
1224	1
1227	3
1231	1
1237	1
1242	1
1245	1
1254	1
1256	1
1258	1
1261	1
1263	1
1264	1
1265	1
1267	1
1272	1
1280	1
1288	2
1290	1
1292	1
1297	1
1299	1
1302	1
1309	1
1322	1
1327	1
1333	1
1350	1
1357	1
1363	1
1367	1
1369	2
1372	1
1375	1
1377	1
1379	1
1384	1
1385	1
1391	1
1394	1
1396	1
1398	1
1399	1
1401	1
1413	1
1414	1
1431	1
1446	1
1460	2
1468	1
1477	1
1483	1
1486	1
1487	1
1502	1
1508	1
1514	1
1520	1
1526	1
1543	1
1550	1
1551	1
1557	1
1566	1
1568	2
1582	1
1599	1
1600	1
1605	1
1610	2
1614	1
1615	1
1622	1
1627	1
1628	1
1629	1
1630	1
1636	1
1637	1
1645	1
1647	1
1651	1
1663	1
1667	1
1680	1
1684	1
1688	1
1708	2
1724	1
1729	1
1734	1
1742	1
1747	1
1754	1
1764	1
1775	1
1822	1
1826	1
1832	1
1842	1
1846	1
1867	1
1868	2
1881	1
1898	1
1923	1
1930	1
1942	1
1945	1
1961	1
2000	1
2006	1
2062	1
2076	1
2079	1
2082	1
2140	1
2184	1
2222	1
2256	1
2362	1
2375	1
2446	1
2495	1
2530	1
2579	1
2650	1
2688	1
3008	1
3046	1
3088	1
3366	1
3617	1
3746	1
3857	1
4132	1
4147	1
4349	1
4424	1
4796	1
5089	1
5923	1
6233	1
27299	1
855154	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..................._......._............................................
........_................_......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]