.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDISTRIBUTION (BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/999fa5c6190998bac9073409ee0c6f/.command.log
Size: 953 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDISTRIBUTION (BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/89fb22de8f94be92b005bb24ba0edd/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/999fa5c6190998bac9073409ee0c6f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/fb5814cff6051034a00d74cb649e6a/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/999fa5c6190998bac9073409ee0c6f/.command.run
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
processing BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam ... Finished