Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/7a7a2c56ba8dc14285ba791b448813/BVT_FFPE_TRNA_utn_04_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/51fa4ead14380f514b027b4cc0269f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/51fa4ead14380f514b027b4cc0269f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/52425d54f4deb7c0f417f8c734ae91/BVT_FFPE_TRNA_utn_04_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory