File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/db6dc22ead000e78269038f68b2554/.command.log
Size
2.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bld_01_A23WKFTLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/d7d3b0ceaaa0ebc8541676a9f0e661/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/db6dc22ead000e78269038f68b2554/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/db6dc22ead000e78269038f68b2554/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/b507ee7b734fe54ccba5d734ae2601/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
FGFR3--TACC3
starfusion
arriba
PPME1--TCF7L2
starfusion
arriba
RBMS1--AFF3
starfusion
arriba
PEDS1--RNU6-639P
arriba
PEDS1--LINC01728
arriba
RPN2--PTPRT
arriba
USP12--MTIF3
arriba
USP12--RNU6-63P
arriba

  0%|          | 0/8 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   0%|          | 0/8 [00:00<?, ?it/s]
Processing FGFR3--TACC3:  12%|█▎        | 1/8 [00:00<00:00,  9.11it/s]
Processing PPME1--TCF7L2:  12%|█▎        | 1/8 [00:00<00:00,  9.11it/s]
Processing PPME1--TCF7L2:  25%|██▌       | 2/8 [00:00<00:00,  9.34it/s]
Processing RBMS1--AFF3:  25%|██▌       | 2/8 [00:00<00:00,  9.34it/s]  
Processing RBMS1--AFF3:  38%|███▊      | 3/8 [00:00<00:00,  9.38it/s]
Processing PEDS1--RNU6-639P:  38%|███▊      | 3/8 [00:00<00:00,  9.38it/s]
Processing PEDS1--RNU6-639P:  50%|█████     | 4/8 [00:00<00:00,  9.41it/s]
Processing PEDS1--LINC01728:  50%|█████     | 4/8 [00:00<00:00,  9.41it/s]
Processing PEDS1--LINC01728:  62%|██████▎   | 5/8 [00:00<00:00,  9.43it/s]
Processing RPN2--PTPRT:  62%|██████▎   | 5/8 [00:00<00:00,  9.43it/s]     
Processing RPN2--PTPRT:  75%|███████▌  | 6/8 [00:00<00:00,  9.44it/s]
Processing USP12--MTIF3:  75%|███████▌  | 6/8 [00:00<00:00,  9.44it/s]
Processing USP12--MTIF3:  88%|████████▊ | 7/8 [00:00<00:00,  9.41it/s]
Processing USP12--RNU6-63P:  88%|████████▊ | 7/8 [00:00<00:00,  9.41it/s]
Processing USP12--RNU6-63P: 100%|██████████| 8/8 [00:00<00:00,  9.42it/s]
Processing USP12--RNU6-63P: 100%|██████████| 8/8 [00:00<00:00,  9.40it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory