File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/fbb4e5972eba643bd4cf5986e4ebbb/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/d095959117ef12fa732f25077e80d0/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/fbb4e5972eba643bd4cf5986e4ebbb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/fbb4e5972eba643bd4cf5986e4ebbb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/291e07041ff12dc1bd9c2c78a12622/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1/abundance.h5
Successfully converted BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1/abundance.h5 to BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1
  Mean Fragment Length: 114.0 bp
  Median Fragment Length: 109.0 bp
  pct_mito_est_counts: 0.01%
  pct_ribo_est_counts: 0.995%
  pct_hk_est_counts: 0.437%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.02%
  pct_ribo_tpm: 3.053%
  pct_hk_tpm: 0.666%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.034%