Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/53ca4113904ed59511c5e4727855f0/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/9c3597d8559d5805d8d6d52000350d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/9c3597d8559d5805d8d6d52000350d/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:43:47.429 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:43:47 GMT 2026] MarkDuplicates --INPUT BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:43:47 GMT 2026] Executing as ?@nf-0e9c3597d8559d5805d8d6d52000350d-ca540-zc6dl on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:43:47 MarkDuplicates Start of doWork freeMemory: 105828256; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:43:47 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:43:47 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,072,457
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 2714 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,668,424
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 6063 as yet unmatched pairs. 639 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,465,205
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 8166 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:10,008,186
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 10736 as yet unmatched pairs. 46 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:12,193,005
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 13145 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:16,514,146
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 15373 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:19,198,538
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 17715 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:21,823,263
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 20364 as yet unmatched pairs. 485 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,896,300
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 22538 as yet unmatched pairs. 35 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:23,971,573
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 25064 as yet unmatched pairs. 235 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:26,774,674
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 27403 as yet unmatched pairs. 303 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:27,907,004
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 29971 as yet unmatched pairs. 215 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:31,696,979
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 32422 as yet unmatched pairs. 216 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:32,944,064
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 35162 as yet unmatched pairs. 412 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:36,139,718
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 37607 as yet unmatched pairs. 287 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:39,353,006
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 40078 as yet unmatched pairs. 389 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:40,495,469
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 41988 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,858
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 44626 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:45,630,593
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 47129 as yet unmatched pairs. 340 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:51,765,822
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 49561 as yet unmatched pairs. 385 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:58,538,852
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 51629 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:67,425,213
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 53861 as yet unmatched pairs. 103 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:84,650,476
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 56035 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:94,031,936
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 58230 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:103,005,881
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 60550 as yet unmatched pairs. 295 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:109,251,835
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 63477 as yet unmatched pairs. 961 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:109,738,141
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 65577 as yet unmatched pairs. 480 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:113,619,816
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 68632 as yet unmatched pairs. 1175 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:116,395,171
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 69905 as yet unmatched pairs. 235 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:119,929,177
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 73568 as yet unmatched pairs. 1474 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:120,620,302
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 73974 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:145,383,632
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 75029 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:146,156,486
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 77948 as yet unmatched pairs. 1854 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:148,540,974
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 77696 as yet unmatched pairs. 627 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:148,953,324
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 78186 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:149,832,886
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 78866 as yet unmatched pairs. 266 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:150,267,091
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 81077 as yet unmatched pairs. 772 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:151,132,705
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 82660 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:153,658,767
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 85149 as yet unmatched pairs. 240 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:154,173,120
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 89994 as yet unmatched pairs. 2915 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:154,602,119
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 90415 as yet unmatched pairs. 1078 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:155,261,683
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 92068 as yet unmatched pairs. 312 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:156,018,276
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 94762 as yet unmatched pairs. 852 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:156,294,879
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 96922 as yet unmatched pairs. 224 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:158,086,595
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 98989 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:161,117,951
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 101298 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:164,560,203
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 103920 as yet unmatched pairs. 431 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:171,540,749
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 106321 as yet unmatched pairs. 578 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:179,108,240
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 107952 as yet unmatched pairs. 159 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:183,116,772
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 110253 as yet unmatched pairs. 159 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:186,353,719
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 112863 as yet unmatched pairs. 657 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:201,712,826
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 114804 as yet unmatched pairs. 303 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:203,818,612
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 117590 as yet unmatched pairs. 706 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:206,730,698
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 120798 as yet unmatched pairs. 1697 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:213,272,551
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 121504 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:223,717,769
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 124334 as yet unmatched pairs. 747 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:226,367,599
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 125885 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:231,336,210
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 128299 as yet unmatched pairs. 79 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:236,048,899
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 130777 as yet unmatched pairs. 105 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:246,591,645
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 133059 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr2:9,380,741
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 135563 as yet unmatched pairs. 134474 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:11,618,617
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 139098 as yet unmatched pairs. 137989 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:20,224,826
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 140230 as yet unmatched pairs. 139112 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr2:26,186,328
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 142489 as yet unmatched pairs. 141349 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:27,441,159
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 145249 as yet unmatched pairs. 144079 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:32,471,041
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 147492 as yet unmatched pairs. 146304 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 365810 as yet unmatched pairs. 145680 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 1054363 as yet unmatched pairs. 142114 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 1229804 as yet unmatched pairs. 141191 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,444
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 1296505 as yet unmatched pairs. 140889 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:42,256,612
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 1298903 as yet unmatched pairs. 139640 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:47,160,687
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 1297591 as yet unmatched pairs. 138301 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:54,973,126
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 1294315 as yet unmatched pairs. 134994 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:61,300,986
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 1291260 as yet unmatched pairs. 131921 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:69,070,658
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 1289509 as yet unmatched pairs. 130149 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:71,365,507
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 1286741 as yet unmatched pairs. 127374 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:74,371,583
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 1285038 as yet unmatched pairs. 125643 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:85,542,275
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1282476 as yet unmatched pairs. 123061 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:94,603,295
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1280097 as yet unmatched pairs. 120658 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:96,861,579
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 1278375 as yet unmatched pairs. 118920 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:99,649,536
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 1276036 as yet unmatched pairs. 116559 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:108,729,134
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1274824 as yet unmatched pairs. 115305 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:110,533,604
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1272479 as yet unmatched pairs. 112935 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:113,755,284
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 1271370 as yet unmatched pairs. 111816 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:130,120,085
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 1269147 as yet unmatched pairs. 109566 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:132,731,866
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 1266927 as yet unmatched pairs. 107317 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:152,143,980
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 1264922 as yet unmatched pairs. 105260 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:162,035,191
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 1262584 as yet unmatched pairs. 102847 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:171,028,377
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 1260686 as yet unmatched pairs. 100927 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:177,434,407
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 1258469 as yet unmatched pairs. 98671 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:186,641,429
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 1256377 as yet unmatched pairs. 96559 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:188,995,725
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 1255339 as yet unmatched pairs. 95506 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:189,007,553
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 1256786 as yet unmatched pairs. 96947 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:189,063,249
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 1249050 as yet unmatched pairs. 89201 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:196,257,895
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1246085 as yet unmatched pairs. 86213 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:202,201,326
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 1243837 as yet unmatched pairs. 83951 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:208,271,629
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 1241960 as yet unmatched pairs. 82045 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,559
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 1261951 as yet unmatched pairs. 102011 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:215,362,058
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 1263615 as yet unmatched pairs. 103673 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:215,367,914
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 1246781 as yet unmatched pairs. 86821 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:215,371,857
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 1262297 as yet unmatched pairs. 102332 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,117
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 1263904 as yet unmatched pairs. 103936 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,263
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 1252350 as yet unmatched pairs. 92373 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,389
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 1259740 as yet unmatched pairs. 99763 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,373
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 1263685 as yet unmatched pairs. 103707 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:215,376,545
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 1260392 as yet unmatched pairs. 100402 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:215,379,128
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 1236869 as yet unmatched pairs. 76867 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:215,380,716
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 1248008 as yet unmatched pairs. 87995 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:215,383,330
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 1229983 as yet unmatched pairs. 69970 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,132
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 1237497 as yet unmatched pairs. 77476 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:215,386,835
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 1231650 as yet unmatched pairs. 71619 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:215,391,652
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 1244560 as yet unmatched pairs. 84525 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:215,394,604
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 1218894 as yet unmatched pairs. 58849 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,705
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 1224179 as yet unmatched pairs. 64129 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,444
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 1219855 as yet unmatched pairs. 59805 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:215,406,352
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 1221450 as yet unmatched pairs. 61391 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,269
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 1224859 as yet unmatched pairs. 64796 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,376
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 1213962 as yet unmatched pairs. 53894 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,959
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 1213395 as yet unmatched pairs. 53323 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr2:215,414,861
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 1212682 as yet unmatched pairs. 52605 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,741
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 1220532 as yet unmatched pairs. 60453 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,423,490
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 1210992 as yet unmatched pairs. 50907 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr2:215,425,226
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 1196701 as yet unmatched pairs. 36615 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,430,789
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 1194794 as yet unmatched pairs. 34699 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,442
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 1198259 as yet unmatched pairs. 38160 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr2:216,190,302
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 1180982 as yet unmatched pairs. 20875 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr2:218,636,290
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 1177749 as yet unmatched pairs. 17630 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr2:222,571,902
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 1175268 as yet unmatched pairs. 15116 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr2:231,146,336
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 1173345 as yet unmatched pairs. 13162 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr2:236,580,697
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 1171491 as yet unmatched pairs. 11292 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr2:237,359,361
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 1170198 as yet unmatched pairs. 9993 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr2:237,378,852
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 1167650 as yet unmatched pairs. 7433 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr2:239,983,452
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 1164361 as yet unmatched pairs. 4134 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr2:241,325,991
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 1162133 as yet unmatched pairs. 1897 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr3:9,793,108
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 1159023 as yet unmatched pairs. 58959 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:13,391,244
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 1156582 as yet unmatched pairs. 56504 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:27,400,811
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 1154415 as yet unmatched pairs. 54307 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:37,325,045
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 1152166 as yet unmatched pairs. 52046 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr3:42,202,500
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 1149759 as yet unmatched pairs. 49628 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:47,056,836
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 1147380 as yet unmatched pairs. 47235 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:48,413,960
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 1145217 as yet unmatched pairs. 45063 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:49,012,925
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 1142572 as yet unmatched pairs. 42416 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:49,412,588
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 1139984 as yet unmatched pairs. 39804 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr3:50,342,986
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 1137334 as yet unmatched pairs. 37136 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr3:52,516,694
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 1135085 as yet unmatched pairs. 34865 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr3:58,008,687
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 1133193 as yet unmatched pairs. 32948 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr3:62,203,511
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 1130154 as yet unmatched pairs. 29888 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:78,667,928
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 1128188 as yet unmatched pairs. 27893 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr3:101,853,702
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 1126209 as yet unmatched pairs. 25912 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr3:120,348,909
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 1123962 as yet unmatched pairs. 23631 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr3:123,700,175
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 1121986 as yet unmatched pairs. 21643 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:128,625,934
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 1119772 as yet unmatched pairs. 19406 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr3:132,356,711
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 1116879 as yet unmatched pairs. 16501 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr3:142,186,489
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 1114768 as yet unmatched pairs. 14370 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr3:155,853,418
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 1112522 as yet unmatched pairs. 12109 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr3:170,384,604
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 1110846 as yet unmatched pairs. 10412 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr3:183,951,984
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 1107965 as yet unmatched pairs. 7489 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr3:184,386,910
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 1105581 as yet unmatched pairs. 5098 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr3:194,441,327
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 1103738 as yet unmatched pairs. 3245 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr3:196,806,626
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 1101571 as yet unmatched pairs. 1062 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr4:1,213,530
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 1099411 as yet unmatched pairs. 35963 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr4:3,182,416
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 1096291 as yet unmatched pairs. 32818 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr4:8,294,151
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 1094200 as yet unmatched pairs. 30716 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr4:25,277,114
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 1091632 as yet unmatched pairs. 28130 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr4:41,014,220
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 1089625 as yet unmatched pairs. 26085 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr4:55,877,938
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 1087168 as yet unmatched pairs. 23606 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr4:73,156,084
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 1084787 as yet unmatched pairs. 21211 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:78,826,073
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 1082579 as yet unmatched pairs. 18972 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr4:87,007,290
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 1080282 as yet unmatched pairs. 16657 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr4:99,072,414
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 1078294 as yet unmatched pairs. 14647 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr4:109,491,370
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 1075854 as yet unmatched pairs. 12190 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 2s. Last read position: chr4:122,355,797
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 1073764 as yet unmatched pairs. 10067 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr4:140,643,533
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 1071758 as yet unmatched pairs. 8038 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr4:151,102,983
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 1070255 as yet unmatched pairs. 6503 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr4:168,246,539
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 1067007 as yet unmatched pairs. 3235 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr4:185,362,049
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 1064722 as yet unmatched pairs. 926 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:6,607,284
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 1062332 as yet unmatched pairs. 51918 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:14,398,991
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 1060389 as yet unmatched pairs. 49967 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:32,591,554
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 1059179 as yet unmatched pairs. 48735 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:39,381,511
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 1055558 as yet unmatched pairs. 45079 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:56,893,563
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 1053281 as yet unmatched pairs. 42794 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr5:70,984,690
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 1051354 as yet unmatched pairs. 40836 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:79,439,124
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 1049151 as yet unmatched pairs. 38616 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:83,541,527
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 1047973 as yet unmatched pairs. 37414 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:97,028,444
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 1044930 as yet unmatched pairs. 34352 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:124,701,106
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 1042748 as yet unmatched pairs. 32156 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:134,857,314
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 1040514 as yet unmatched pairs. 29915 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:139,680,547
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 1038597 as yet unmatched pairs. 27984 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr5:141,853,995
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 1036056 as yet unmatched pairs. 25411 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr5:150,117,674
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 1035736 as yet unmatched pairs. 25072 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,135,654
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 1034032 as yet unmatched pairs. 23360 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,291
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 1038766 as yet unmatched pairs. 28088 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:151,664,125
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 1027893 as yet unmatched pairs. 17202 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr5:168,246,795
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 1023745 as yet unmatched pairs. 13054 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr5:172,234,142
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 1021710 as yet unmatched pairs. 11007 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr5:177,306,454
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 1019913 as yet unmatched pairs. 9177 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:179,343,947
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 1017020 as yet unmatched pairs. 6270 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,867
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 1018258 as yet unmatched pairs. 7496 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr5:180,241,107
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 1012192 as yet unmatched pairs. 1421 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr6:3,153,971
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 1009745 as yet unmatched pairs. 64279 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr6:7,585,188
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 1007643 as yet unmatched pairs. 62156 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr6:18,249,702
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 1005269 as yet unmatched pairs. 59741 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 2s. Last read position: chr6:26,376,820
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 1002824 as yet unmatched pairs. 57263 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,547
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 1001595 as yet unmatched pairs. 56026 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:30,890,972
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 998741 as yet unmatched pairs. 53161 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:31,631,910
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 996334 as yet unmatched pairs. 50746 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,218
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 994305 as yet unmatched pairs. 48709 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:32,079,093
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 992333 as yet unmatched pairs. 46721 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:32,980,373
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 990756 as yet unmatched pairs. 45137 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:33,416,767
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 988370 as yet unmatched pairs. 42726 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:36,899,586
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 985171 as yet unmatched pairs. 39512 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:43,047,097
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 982459 as yet unmatched pairs. 36775 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:44,248,687
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 981186 as yet unmatched pairs. 35493 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:56,501,120
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 978029 as yet unmatched pairs. 32289 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr6:73,482,453
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 975820 as yet unmatched pairs. 30060 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:75,194,892
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 974695 as yet unmatched pairs. 28927 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:85,567,542
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 971865 as yet unmatched pairs. 26081 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr6:99,412,653
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 969814 as yet unmatched pairs. 24021 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 2s. Last read position: chr6:111,025,402
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 966832 as yet unmatched pairs. 21031 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr6:117,575,206
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 964489 as yet unmatched pairs. 18680 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:131,852,209
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 962600 as yet unmatched pairs. 16770 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr6:136,356,754
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 960092 as yet unmatched pairs. 14241 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr6:144,748,406
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 957626 as yet unmatched pairs. 11754 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr6:151,807,927
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 960358 as yet unmatched pairs. 14461 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr6:154,832,143
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 953156 as yet unmatched pairs. 7241 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr6:158,785,573
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 951790 as yet unmatched pairs. 5860 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr6:167,827,185
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 948825 as yet unmatched pairs. 2884 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 2s. Last read position: chr7:248,405
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 945983 as yet unmatched pairs. 70031 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:2,543,587
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 943563 as yet unmatched pairs. 67593 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,745
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 945854 as yet unmatched pairs. 69864 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,540
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 941710 as yet unmatched pairs. 65699 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:16,674,453
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 935770 as yet unmatched pairs. 59750 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:27,107,879
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 933543 as yet unmatched pairs. 57496 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 2s. Last read position: chr7:41,689,845
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 931837 as yet unmatched pairs. 55765 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:44,110,327
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 931277 as yet unmatched pairs. 55188 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:44,799,773
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 929921 as yet unmatched pairs. 53822 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:64,978,120
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 924289 as yet unmatched pairs. 48178 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:73,183,226
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 922718 as yet unmatched pairs. 46595 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:74,752,106
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 921058 as yet unmatched pairs. 44931 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:75,992,249
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 919441 as yet unmatched pairs. 43304 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,996
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 926592 as yet unmatched pairs. 50444 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:86,909,832
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 914650 as yet unmatched pairs. 38491 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:92,236,430
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 912539 as yet unmatched pairs. 36364 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 2s. Last read position: chr7:94,407,852
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 916392 as yet unmatched pairs. 40214 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr7:94,416,464
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 912587 as yet unmatched pairs. 36403 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 2s. Last read position: chr7:94,427,023
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 911000 as yet unmatched pairs. 34801 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 2s. Last read position: chr7:95,587,727
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 902380 as yet unmatched pairs. 26176 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 58s. Last read position: chr7:100,089,396
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 900030 as yet unmatched pairs. 23812 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,678,745
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 897907 as yet unmatched pairs. 21674 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr7:102,506,760
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 895405 as yet unmatched pairs. 19160 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:105,040,929
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 894467 as yet unmatched pairs. 18215 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:111,977,227
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 892136 as yet unmatched pairs. 15856 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr7:127,887,914
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 890960 as yet unmatched pairs. 14658 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr7:134,928,796
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 887862 as yet unmatched pairs. 11550 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr7:139,134,654
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 885226 as yet unmatched pairs. 8910 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:143,381,685
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 883291 as yet unmatched pairs. 6952 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr7:149,019,044
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 881656 as yet unmatched pairs. 5315 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr7:151,235,423
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 878996 as yet unmatched pairs. 2652 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr7:158,760,074
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 876937 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr8:17,645,871
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 874456 as yet unmatched pairs. 59641 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:22,614,924
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 872476 as yet unmatched pairs. 57651 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:30,179,440
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 869754 as yet unmatched pairs. 54923 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:37,697,756
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 872487 as yet unmatched pairs. 57644 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr8:37,844,504
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 863577 as yet unmatched pairs. 48726 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:38,413,696
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 868433 as yet unmatched pairs. 53578 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr8:38,457,390
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 863249 as yet unmatched pairs. 48381 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr8:38,846,719
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 860602 as yet unmatched pairs. 45732 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr8:43,056,342
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 854329 as yet unmatched pairs. 39451 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr8:54,073,278
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 852410 as yet unmatched pairs. 37513 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr8:66,843,477
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 850216 as yet unmatched pairs. 35311 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:70,214,060
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 848116 as yet unmatched pairs. 33191 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr8:81,673,882
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 846117 as yet unmatched pairs. 31172 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr8:90,044,846
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 843707 as yet unmatched pairs. 28748 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr8:94,827,325
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 841359 as yet unmatched pairs. 26388 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,321
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 845150 as yet unmatched pairs. 30159 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr8:100,925,014
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 839072 as yet unmatched pairs. 24073 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr8:108,229,162
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 835190 as yet unmatched pairs. 20174 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:123,207,155
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 832384 as yet unmatched pairs. 17331 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:126,967,455
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 829733 as yet unmatched pairs. 14671 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:140,674,341
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 827869 as yet unmatched pairs. 12785 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,818,493
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 825047 as yet unmatched pairs. 9946 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,931
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 824562 as yet unmatched pairs. 9454 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,248
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 823078 as yet unmatched pairs. 7970 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,925
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 820653 as yet unmatched pairs. 5536 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,309,815
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 817619 as yet unmatched pairs. 2483 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr9:2,039,629
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 815143 as yet unmatched pairs. 44850 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:16,437,178
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 812682 as yet unmatched pairs. 42363 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:33,463,304
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 810378 as yet unmatched pairs. 40043 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr9:35,704,036
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 808365 as yet unmatched pairs. 38008 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr9:68,391,557
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 805806 as yet unmatched pairs. 35421 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:84,877,150
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 803742 as yet unmatched pairs. 33354 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:93,317,894
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 801556 as yet unmatched pairs. 31162 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr9:99,066,966
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 799254 as yet unmatched pairs. 28848 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr9:111,425,795
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 797160 as yet unmatched pairs. 26742 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:115,087,034
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 794571 as yet unmatched pairs. 24138 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr9:123,676,743
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 792164 as yet unmatched pairs. 21719 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr9:127,712,566
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 789690 as yet unmatched pairs. 19233 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr9:128,494,521
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 787252 as yet unmatched pairs. 16785 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr9:129,632,744
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 784709 as yet unmatched pairs. 14237 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr9:131,504,188
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 782563 as yet unmatched pairs. 12084 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr9:134,050,522
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 780625 as yet unmatched pairs. 10140 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr9:134,835,038
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 778161 as yet unmatched pairs. 7666 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr9:136,723,495
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 775046 as yet unmatched pairs. 4528 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr9:137,220,566
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 772134 as yet unmatched pairs. 1602 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr10:3,781,645
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 769798 as yet unmatched pairs. 41599 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:8,073,785
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 768309 as yet unmatched pairs. 40091 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:17,696,648
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 764800 as yet unmatched pairs. 36567 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:26,501,055
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 762736 as yet unmatched pairs. 34489 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:32,912,086
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 761157 as yet unmatched pairs. 32897 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:44,380,771
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 759787 as yet unmatched pairs. 31527 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:46,016,539
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 761102 as yet unmatched pairs. 32841 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:51,699,166
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 755584 as yet unmatched pairs. 27313 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:68,072,962
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 753266 as yet unmatched pairs. 24962 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:72,563,004
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 750898 as yet unmatched pairs. 22578 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:74,843,020
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 749206 as yet unmatched pairs. 20871 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr10:86,437,591
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 746423 as yet unmatched pairs. 18066 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:89,403,155
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 746219 as yet unmatched pairs. 17853 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr10:97,452,217
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 742048 as yet unmatched pairs. 13675 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr10:102,656,318
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 739710 as yet unmatched pairs. 11327 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr10:114,970,394
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 737477 as yet unmatched pairs. 9081 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr10:119,581,937
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 735519 as yet unmatched pairs. 7108 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:121,593,711
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 736049 as yet unmatched pairs. 7629 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr10:126,118,187
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 730900 as yet unmatched pairs. 2468 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr11:251,818
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 728296 as yet unmatched pairs. 92079 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr11:376,531
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 725934 as yet unmatched pairs. 89716 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr11:829,349
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 723205 as yet unmatched pairs. 86983 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,113
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 720967 as yet unmatched pairs. 84742 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,368
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 720834 as yet unmatched pairs. 84608 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,415
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 719574 as yet unmatched pairs. 83343 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,254,304
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 717678 as yet unmatched pairs. 81446 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:3,370,975
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 714849 as yet unmatched pairs. 78606 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:6,610,880
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 712246 as yet unmatched pairs. 75994 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:9,472,732
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 709803 as yet unmatched pairs. 73538 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:11,905,482
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 707672 as yet unmatched pairs. 71393 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:17,112,636
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 705239 as yet unmatched pairs. 68946 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:32,097,235
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 702825 as yet unmatched pairs. 66507 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:35,229,170
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 701269 as yet unmatched pairs. 64949 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:46,374,400
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 698700 as yet unmatched pairs. 62373 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:47,477,349
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 696067 as yet unmatched pairs. 59728 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:57,705,043
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 693393 as yet unmatched pairs. 57042 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:59,854,733
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 695464 as yet unmatched pairs. 59099 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:60,971,858
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 688835 as yet unmatched pairs. 52469 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:62,517,274
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 689222 as yet unmatched pairs. 52848 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,526
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 686166 as yet unmatched pairs. 49792 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,697
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 685309 as yet unmatched pairs. 48928 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:62,532,455
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 682015 as yet unmatched pairs. 45621 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:62,692,431
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 678899 as yet unmatched pairs. 42497 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:64,193,108
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 676073 as yet unmatched pairs. 39659 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:64,796,361
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 673519 as yet unmatched pairs. 37102 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:65,526,774
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 670843 as yet unmatched pairs. 34386 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:65,655,858
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 669853 as yet unmatched pairs. 33386 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:66,241,558
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 665625 as yet unmatched pairs. 29158 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:66,858,102
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 663213 as yet unmatched pairs. 26739 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:68,048,907
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 660552 as yet unmatched pairs. 24071 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,979
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 661793 as yet unmatched pairs. 25312 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr11:72,005,316
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 656190 as yet unmatched pairs. 19706 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:73,309,707
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 652702 as yet unmatched pairs. 16209 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:78,069,967
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 650955 as yet unmatched pairs. 14444 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:93,675,631
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 648176 as yet unmatched pairs. 11642 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:108,332,011
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 646058 as yet unmatched pairs. 9511 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:118,472,908
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 644093 as yet unmatched pairs. 7528 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:119,312,070
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 641538 as yet unmatched pairs. 4960 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr11:125,609,459
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 639218 as yet unmatched pairs. 2636 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:133,936,174
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 636741 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 2s. Last read position: chr12:2,797,760
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 634899 as yet unmatched pairs. 62754 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:6,594,601
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 632467 as yet unmatched pairs. 60315 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:7,065,137
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 630294 as yet unmatched pairs. 58136 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:10,723,006
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 627702 as yet unmatched pairs. 55537 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:14,942,399
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 625741 as yet unmatched pairs. 53569 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:31,100,648
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 623269 as yet unmatched pairs. 51091 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:47,791,613
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 621289 as yet unmatched pairs. 49092 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,594
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 618911 as yet unmatched pairs. 46710 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:49,543,334
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 616901 as yet unmatched pairs. 44699 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,665
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 614986 as yet unmatched pairs. 42768 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:53,441,766
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 612424 as yet unmatched pairs. 40199 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:54,347,999
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 610687 as yet unmatched pairs. 38455 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:56,143,157
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 607911 as yet unmatched pairs. 35678 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:56,615,582
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 606002 as yet unmatched pairs. 33767 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:57,105,234
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 604588 as yet unmatched pairs. 32349 records in RAM.
INFO 2026-06-08 08:56:20 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:57,206,521
INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 601550 as yet unmatched pairs. 29307 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:57,827,033
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 598793 as yet unmatched pairs. 26536 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:69,260,048
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 596518 as yet unmatched pairs. 24252 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:89,635,103
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 593904 as yet unmatched pairs. 21634 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:96,247,629
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 591945 as yet unmatched pairs. 19674 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:105,052,846
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 589704 as yet unmatched pairs. 17428 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:110,445,484
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 587391 as yet unmatched pairs. 15106 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:112,948,860
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 585266 as yet unmatched pairs. 12981 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:120,151,264
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 582728 as yet unmatched pairs. 10438 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:121,822,701
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 580377 as yet unmatched pairs. 8081 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:124,325,431
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 577920 as yet unmatched pairs. 5613 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:131,909,690
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 575932 as yet unmatched pairs. 3614 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:132,808,539
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 573330 as yet unmatched pairs. 1002 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr13:24,503,657
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 570657 as yet unmatched pairs. 16860 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr13:37,563,245
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 573856 as yet unmatched pairs. 20048 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr13:40,560,690
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 566719 as yet unmatched pairs. 12910 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr13:48,256,293
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 564767 as yet unmatched pairs. 10945 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr13:77,061,662
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 562149 as yet unmatched pairs. 8293 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr13:101,715,712
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 559960 as yet unmatched pairs. 6094 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr13:110,428,515
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 557587 as yet unmatched pairs. 3714 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr13:113,320,416
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 555259 as yet unmatched pairs. 1383 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr14:21,231,006
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 554539 as yet unmatched pairs. 40841 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:22,877,278
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 550615 as yet unmatched pairs. 36913 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:24,164,688
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 549776 as yet unmatched pairs. 36070 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:30,950,900
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 545414 as yet unmatched pairs. 31704 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:37,591,411
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 544113 as yet unmatched pairs. 30391 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:50,199,755
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 541055 as yet unmatched pairs. 27295 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:55,667,245
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 539068 as yet unmatched pairs. 25303 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:64,738,742
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 536502 as yet unmatched pairs. 22732 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr14:70,342,658
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 534271 as yet unmatched pairs. 20494 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:74,781,623
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 532029 as yet unmatched pairs. 18245 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr14:88,824,757
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 529477 as yet unmatched pairs. 15678 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:94,382,755
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 527221 as yet unmatched pairs. 13413 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:102,000,309
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 525117 as yet unmatched pairs. 11301 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:103,685,561
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 523053 as yet unmatched pairs. 9230 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr14:104,946,917
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 521016 as yet unmatched pairs. 7192 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:105,624,512
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 519178 as yet unmatched pairs. 5347 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,530
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 519358 as yet unmatched pairs. 5525 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,037
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 514785 as yet unmatched pairs. 952 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:29,705,668
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 512719 as yet unmatched pairs. 36955 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:39,584,359
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 511334 as yet unmatched pairs. 35561 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:41,739,939
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 508661 as yet unmatched pairs. 32888 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:43,763,098
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 506575 as yet unmatched pairs. 30793 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:48,159,712
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 504131 as yet unmatched pairs. 28343 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:50,609,945
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 501791 as yet unmatched pairs. 25998 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:57,063,748
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 499941 as yet unmatched pairs. 24143 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:61,961,706
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 497578 as yet unmatched pairs. 21773 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:64,674,428
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 495292 as yet unmatched pairs. 19480 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr15:68,054,341
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 492927 as yet unmatched pairs. 17108 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr15:72,202,598
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 491242 as yet unmatched pairs. 15412 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,719
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 489672 as yet unmatched pairs. 13834 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:75,609,567
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 485477 as yet unmatched pairs. 9639 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:79,845,192
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 483073 as yet unmatched pairs. 7233 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:85,655,688
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 481451 as yet unmatched pairs. 5601 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:90,477,770
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 479094 as yet unmatched pairs. 3240 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:99,674,446
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 476840 as yet unmatched pairs. 979 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:574,330
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 474460 as yet unmatched pairs. 62799 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:1,346,936
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 471362 as yet unmatched pairs. 59695 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:1,976,858
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 468443 as yet unmatched pairs. 56776 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr16:2,174,260
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 465748 as yet unmatched pairs. 54078 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,332
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 463863 as yet unmatched pairs. 52185 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,758
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 462627 as yet unmatched pairs. 50943 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:3,729,299
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 458341 as yet unmatched pairs. 46655 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:5,077,525
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 455654 as yet unmatched pairs. 43961 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:14,234,195
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 454108 as yet unmatched pairs. 42407 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr16:14,932,631
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 452060 as yet unmatched pairs. 40359 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:16,310,397
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 450378 as yet unmatched pairs. 38677 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:18,343,758
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 449917 as yet unmatched pairs. 38212 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:18,872,333
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 448467 as yet unmatched pairs. 36759 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:21,411,114
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 448302 as yet unmatched pairs. 36582 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:21,888,017
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 446847 as yet unmatched pairs. 35122 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,777
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 446989 as yet unmatched pairs. 35257 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:27,685,266
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 444140 as yet unmatched pairs. 32403 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:28,867,386
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 442473 as yet unmatched pairs. 30729 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,476
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 441978 as yet unmatched pairs. 30229 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,205
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 439807 as yet unmatched pairs. 28050 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:30,557,828
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 437354 as yet unmatched pairs. 25592 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:31,093,356
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 435381 as yet unmatched pairs. 23612 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:47,473,357
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 432848 as yet unmatched pairs. 21074 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:55,479,544
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 431321 as yet unmatched pairs. 19536 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:57,744,420
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 427975 as yet unmatched pairs. 16185 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:67,282,321
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 425287 as yet unmatched pairs. 13492 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:69,120,580
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 422917 as yet unmatched pairs. 11119 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:71,850,258
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 420766 as yet unmatched pairs. 8958 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:81,660,889
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 418373 as yet unmatched pairs. 6557 records in RAM.
INFO 2026-06-08 08:58:38 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:88,076,592
INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 415738 as yet unmatched pairs. 3921 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:89,562,338
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 413592 as yet unmatched pairs. 1763 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 2s. Last read position: chr17:1,455,953
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 410717 as yet unmatched pairs. 180365 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:2,387,313
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 408160 as yet unmatched pairs. 177804 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:4,970,435
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 405693 as yet unmatched pairs. 175329 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:7,312,311
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 403136 as yet unmatched pairs. 172769 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:7,557,135
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 401425 as yet unmatched pairs. 171058 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:8,379,806
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 399292 as yet unmatched pairs. 168921 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:17,075,725
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 396772 as yet unmatched pairs. 166392 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:18,256,571
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 393897 as yet unmatched pairs. 163512 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:28,357,289
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 392056 as yet unmatched pairs. 161669 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:28,749,281
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 389344 as yet unmatched pairs. 158955 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:31,214,502
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 387012 as yet unmatched pairs. 156621 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:35,610,925
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 385688 as yet unmatched pairs. 155288 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:37,276,023
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 382806 as yet unmatched pairs. 152406 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:38,771,012
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 381149 as yet unmatched pairs. 150747 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,354
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 379633 as yet unmatched pairs. 149231 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:39,995,426
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 376103 as yet unmatched pairs. 145697 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:40,456,604
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 373644 as yet unmatched pairs. 143238 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:41,810,900
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 370504 as yet unmatched pairs. 140097 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:42,543,120
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 368128 as yet unmatched pairs. 137715 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:43,522,084
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 365545 as yet unmatched pairs. 135129 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:44,435,072
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 363225 as yet unmatched pairs. 132799 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:46,624,254
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 361590 as yet unmatched pairs. 131164 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:48,852,912
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 359239 as yet unmatched pairs. 128813 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,520
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 376475 as yet unmatched pairs. 146047 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,934
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 375995 as yet unmatched pairs. 145567 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,661
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 365945 as yet unmatched pairs. 135517 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,891
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 395346 as yet unmatched pairs. 164917 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,083
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 410906 as yet unmatched pairs. 180476 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,894
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 406251 as yet unmatched pairs. 175820 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,099
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 416802 as yet unmatched pairs. 186369 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,610
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 377344 as yet unmatched pairs. 146911 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 129s. Last read position: chr17:50,188,937
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 379788 as yet unmatched pairs. 149354 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,376
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 365054 as yet unmatched pairs. 134620 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,502
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 381210 as yet unmatched pairs. 150773 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,860
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 395185 as yet unmatched pairs. 164748 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,040
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 392487 as yet unmatched pairs. 162049 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,364
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 381466 as yet unmatched pairs. 151026 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,914
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 369677 as yet unmatched pairs. 139237 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,843
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 359716 as yet unmatched pairs. 129267 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,648
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 336342 as yet unmatched pairs. 105892 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,836
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 365959 as yet unmatched pairs. 135507 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,963
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 376026 as yet unmatched pairs. 145574 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,136
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 397757 as yet unmatched pairs. 167305 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,413
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 354124 as yet unmatched pairs. 123671 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,753
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 346158 as yet unmatched pairs. 115704 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,239
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 345425 as yet unmatched pairs. 114961 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,572
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 348276 as yet unmatched pairs. 117810 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,947
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 335639 as yet unmatched pairs. 105173 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,185
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 353812 as yet unmatched pairs. 123346 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,503
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 343996 as yet unmatched pairs. 113526 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,027
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 358686 as yet unmatched pairs. 128216 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,749
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 352042 as yet unmatched pairs. 121572 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,439
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 309000 as yet unmatched pairs. 78528 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,267
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 325308 as yet unmatched pairs. 94833 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,574
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 305005 as yet unmatched pairs. 74526 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,411
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 290524 as yet unmatched pairs. 60036 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:56,856,551
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 269841 as yet unmatched pairs. 39351 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:59,660,522
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 269418 as yet unmatched pairs. 38925 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr17:59,934,514
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 265507 as yet unmatched pairs. 35012 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr17:63,395,840
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 263218 as yet unmatched pairs. 32717 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr17:64,504,733
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 261466 as yet unmatched pairs. 30964 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr17:68,515,456
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 261357 as yet unmatched pairs. 30853 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr17:74,954,325
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 256512 as yet unmatched pairs. 26006 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr17:75,630,238
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 253397 as yet unmatched pairs. 22890 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr17:76,475,042
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 250684 as yet unmatched pairs. 20171 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:78,855,784
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 249594 as yet unmatched pairs. 19075 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:80,273,250
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 245792 as yet unmatched pairs. 15271 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:81,236,995
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 243157 as yet unmatched pairs. 12636 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr17:81,845,871
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 241276 as yet unmatched pairs. 10754 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:82,080,370
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 238587 as yet unmatched pairs. 8061 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr17:82,087,208
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 236369 as yet unmatched pairs. 5837 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:82,246,024
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 232114 as yet unmatched pairs. 1576 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr18:6,244,560
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 229449 as yet unmatched pairs. 21075 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr18:12,706,549
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 227572 as yet unmatched pairs. 19193 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr18:23,001,612
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 224902 as yet unmatched pairs. 16515 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr18:26,090,498
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 222371 as yet unmatched pairs. 13983 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr18:36,114,244
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 224677 as yet unmatched pairs. 16286 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr18:36,159,788
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 219647 as yet unmatched pairs. 11253 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr18:49,802,730
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 216009 as yet unmatched pairs. 7610 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 2s. Last read position: chr18:58,918,874
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 213648 as yet unmatched pairs. 5245 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr18:63,318,446
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 213177 as yet unmatched pairs. 4773 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr19:579,570
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 208824 as yet unmatched pairs. 70971 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:1,123,964
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 205540 as yet unmatched pairs. 67684 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:2,120,863
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 202830 as yet unmatched pairs. 64972 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:3,747,933
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 199626 as yet unmatched pairs. 61766 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:5,661,708
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 197088 as yet unmatched pairs. 59227 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:7,629,847
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 194505 as yet unmatched pairs. 56643 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:9,989,352
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 192103 as yet unmatched pairs. 54241 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:10,923,831
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 189257 as yet unmatched pairs. 51393 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:12,679,699
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 186910 as yet unmatched pairs. 49046 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:14,107,353
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 184220 as yet unmatched pairs. 46356 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:15,239,187
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 182420 as yet unmatched pairs. 44555 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:16,525,468
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 179439 as yet unmatched pairs. 41572 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:18,175,603
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 176618 as yet unmatched pairs. 38739 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:19,198,664
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 173872 as yet unmatched pairs. 35992 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr19:34,399,944
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 171593 as yet unmatched pairs. 33708 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:36,121,526
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 168259 as yet unmatched pairs. 30373 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:38,880,714
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 166106 as yet unmatched pairs. 28219 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:40,238,034
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 164131 as yet unmatched pairs. 26244 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:41,869,081
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 162145 as yet unmatched pairs. 24258 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:42,375,697
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 158657 as yet unmatched pairs. 20765 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:45,264,708
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 155884 as yet unmatched pairs. 17987 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:46,918,677
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 153285 as yet unmatched pairs. 15381 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:48,861,458
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 150320 as yet unmatched pairs. 12411 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:49,651,888
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 147608 as yet unmatched pairs. 9691 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:51,891,382
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 144993 as yet unmatched pairs. 7076 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,598
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 143385 as yet unmatched pairs. 5467 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:57,290,708
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 140314 as yet unmatched pairs. 2396 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:388,051
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 137900 as yet unmatched pairs. 34428 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr20:3,046,147
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 135233 as yet unmatched pairs. 31758 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr20:10,413,174
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 132769 as yet unmatched pairs. 29294 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr20:20,025,677
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 130716 as yet unmatched pairs. 27240 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr20:32,145,382
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 128224 as yet unmatched pairs. 24748 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr20:34,929,088
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 125633 as yet unmatched pairs. 22156 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr20:36,500,547
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 123455 as yet unmatched pairs. 19977 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr20:41,166,347
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 120741 as yet unmatched pairs. 17255 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr20:45,335,851
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 118817 as yet unmatched pairs. 15328 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr20:47,676,582
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 116215 as yet unmatched pairs. 12726 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr20:50,130,938
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 113873 as yet unmatched pairs. 10384 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr20:57,652,423
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 111669 as yet unmatched pairs. 8179 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr20:62,328,426
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 108876 as yet unmatched pairs. 5383 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr20:63,562,668
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 106196 as yet unmatched pairs. 2703 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr21:5,117,063
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 103248 as yet unmatched pairs. 21809 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,864
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 102254 as yet unmatched pairs. 20807 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr21:14,967,124
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 100785 as yet unmatched pairs. 19336 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr21:33,522,195
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 98039 as yet unmatched pairs. 16590 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr21:36,333,671
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 95483 as yet unmatched pairs. 14034 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr21:41,991,408
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 93375 as yet unmatched pairs. 11926 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr21:44,851,373
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 91414 as yet unmatched pairs. 9962 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr21:45,987,607
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 88625 as yet unmatched pairs. 7171 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr21:46,111,511
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 87648 as yet unmatched pairs. 6194 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr21:46,132,475
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 84147 as yet unmatched pairs. 2693 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr22:19,176,424
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 80619 as yet unmatched pairs. 39184 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:21,209,359
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 77797 as yet unmatched pairs. 36362 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr22:23,779,347
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 76888 as yet unmatched pairs. 35453 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr22:24,611,203
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 72994 as yet unmatched pairs. 31559 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr22:28,797,167
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 72934 as yet unmatched pairs. 31499 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:29,331,814
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 67935 as yet unmatched pairs. 26500 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr22:31,618,322
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 65599 as yet unmatched pairs. 24164 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr22:36,265,645
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 63477 as yet unmatched pairs. 22042 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:36,762,907
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 60610 as yet unmatched pairs. 19174 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr22:37,933,039
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 58356 as yet unmatched pairs. 16919 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,927
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 55858 as yet unmatched pairs. 14420 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,935
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 55204 as yet unmatched pairs. 13766 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr22:41,577,307
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 50851 as yet unmatched pairs. 9413 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr22:45,197,006
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 48334 as yet unmatched pairs. 6889 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr22:49,909,289
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 45411 as yet unmatched pairs. 3966 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr22:50,531,230
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 42695 as yet unmatched pairs. 1250 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chrX:3,320,371
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 40592 as yet unmatched pairs. 35190 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:17,047,472
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 37890 as yet unmatched pairs. 32487 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:40,074,482
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 35382 as yet unmatched pairs. 29977 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:47,210,105
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 33657 as yet unmatched pairs. 28250 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chrX:49,038,007
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 31015 as yet unmatched pairs. 25608 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:53,547,690
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 28725 as yet unmatched pairs. 23317 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:55,749,926
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 25860 as yet unmatched pairs. 20452 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chrX:71,297,447
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 24067 as yet unmatched pairs. 18659 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:77,684,016
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 22198 as yet unmatched pairs. 16790 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chrX:92,618,448
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 20468 as yet unmatched pairs. 15059 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chrX:119,236,501
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 17283 as yet unmatched pairs. 11874 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:131,086,633
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 15191 as yet unmatched pairs. 9782 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chrX:152,701,081
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 13311 as yet unmatched pairs. 7902 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:153,957,357
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 10865 as yet unmatched pairs. 5456 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chrX:154,366,751
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 9032 as yet unmatched pairs. 3623 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chrX:155,033,442
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 5755 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: GL000220.1:154,484
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 3591 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,196
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 744 as yet unmatched pairs. 708 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 632713562 records. 0 pairs never matched.
INFO 2026-06-08 09:06:08 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140048; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:06:08 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:06:12 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:06:12 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1337
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,277
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,474
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1315
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,347
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 3915
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,474
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,272
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,601
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,298
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 2433
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,228
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,233
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,781
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 2013
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,123
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,439
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1460
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,013
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 2540
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,299
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,839
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,438
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 2701
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,138
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,454
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,197
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1897
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,320
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,533
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,260
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1366
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,129
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1227
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,695
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1187
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,561
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1434
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,654
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 2971
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,874
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,023
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1675
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,239
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 2433
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,166
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,333
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,629
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1406
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,123
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1857
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,925
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder Large duplicate set. size = 1853
INFO 2026-06-08 09:06:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,526
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,916
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,771
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,633
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,924
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,963
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1202
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,642
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,479
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,370
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1221
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,704
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 2285
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,515
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,256
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1881
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,595
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,588
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1644
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,235
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,480
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder Large duplicate set. size = 1340
INFO 2026-06-08 09:06:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,995
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,869
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1429
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,903
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1473
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,113
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,659
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1341
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,894
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,397
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,015
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,618
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1486
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,825
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,268
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,830
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,299
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1370
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,010
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,221
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,722
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,947
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1416
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,413
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1900
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,017
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,680
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,456
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,792
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1210
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,437
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,187
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder Large duplicate set. size = 1196
INFO 2026-06-08 09:06:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,967
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,796
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1624
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,744
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,022
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1261
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,762
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1503
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,217
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1701
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,386
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,806
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1881
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,835
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1266
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,270
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder Large duplicate set. size = 1630
INFO 2026-06-08 09:06:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,923
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1766
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,665
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,196
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1374
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,077
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1212
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,242
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,714
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,991
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1202
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,698
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,076
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1701
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,090
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,182
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:06:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,850
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,713
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 2098
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,509
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,384
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,074
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,218
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1943
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,521
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1462
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,765
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1406
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,026
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,366
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1569
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,665
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 2343
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,327
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,548
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,431
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1212
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,016
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1257
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,370
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,609
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1865
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,594
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,259
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,683
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,035
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,039
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1292
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,189
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1448
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,650
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,651
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:06:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,476
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,321
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,319
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1455
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,890
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1370
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,928
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,512
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1425
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,896
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,415
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 2428
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,242
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,672
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1962
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,722
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1682
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,341
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1656
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,286
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,130
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1181
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,841
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1358
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,424
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,962
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,227
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1873
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,878
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,097
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 2366
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,633
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,224
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 2034
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,537
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,856
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,544
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1513
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,223
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 2160
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,390
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,258
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,098
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,265
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1359
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,740
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,711
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,942
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1308
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,514
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,398
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1435
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,642
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1217
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,287
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,982
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1159
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,172
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1626
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,301
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 1378
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,248
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder Large duplicate set. size = 2629
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,071
INFO 2026-06-08 09:07:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,351
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1252
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,459
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,784
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1275
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,030
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,589
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,039
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,816
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,458
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1414
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,032
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,014
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1567
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,403
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1345
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,244
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,787
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1619
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,512
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1970
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,721
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder Large duplicate set. size = 1387
INFO 2026-06-08 09:07:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,461
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,201
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,252
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,727
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,834
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1232
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,055
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,275
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1478
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,740
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,621
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1210
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,506
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1829
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,513
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,167
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 2112
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,405
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,019
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,309
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1258
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,278
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,737
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,390
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,057
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1895
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,957
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1244
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,044
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1453
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,005
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,988
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1523
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,001
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,415
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 2328
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,165
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,901
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,261
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,200
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1652
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,867
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,645
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,984
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1300
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,461
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1646
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,385
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1388
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,266
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:07:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,231
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,845
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,791
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,574
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1206
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,031
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1515
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,448
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1449
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,312
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1680
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,618
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,130
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1343
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,322
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1759
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,038
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1350
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,923
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1258
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,914
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1496
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,864
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1394
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,467
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1179
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,064
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,799
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,566
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1729
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,937
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,201
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,021
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,149
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1689
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,847
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,871
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,282
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,097
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,864
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,415
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 2316
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,683
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,322
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1269
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,696
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,811
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 09:07:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,171
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,198
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1698
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,661
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,158
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,758
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1726
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,276
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,779
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,264
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1257
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,423
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1206
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,281
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1138
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,973
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,876
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1374
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,073
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1531
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,039
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1600
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,728
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1791
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,377
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,017
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1858
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,208
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1535
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,925
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1508
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,966
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,950
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1680
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,442
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1759
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,074
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 2155
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,556
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,629
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,373
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,966
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 2419
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,366
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,591
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,279
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,054
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,774
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 2758
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,349
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,507
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,965
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 09:07:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,285
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,788
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,027
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,935
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,914
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,845
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,760
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1215
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,381
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 2648
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,881
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,061
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,440
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,987
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 2459
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,140
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,879
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,137
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,746
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 3807
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,482
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,741
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,113
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder Large duplicate set. size = 1542
INFO 2026-06-08 09:07:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,224
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,005
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,445
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,516
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,113
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,559
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1332
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,343
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1364
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,519
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,412
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1562
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,936
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,447
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1706
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,464
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,525
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,551
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,348
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1752
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,003
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 2515
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,801
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,869
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,028
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 2561
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,810
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,609
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,652
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 2352
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,213
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,063
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 3362
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,416
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,433
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,801
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 2053
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,792
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,126
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1807
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,149
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1280
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,582
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,610
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1223
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,136
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1184
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,356
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1641
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,124
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,921
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1347
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,087
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1181
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,965
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,333
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1743
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,906
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 3346
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,796
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,321
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,395
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,944
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,888
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1541
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,347
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 2047
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,285
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,477
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 2245
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,610
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,785
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,198
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder Large duplicate set. size = 1411
INFO 2026-06-08 09:07:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,668
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,241
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1301
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,848
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1235
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,642
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,589
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1399
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,468
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,725
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,302
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1949
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,050
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,456
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,424
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1894
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,581
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1209
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,895
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1325
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,912
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1262
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,860
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1438
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,467
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1308
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,791
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 2571
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,071
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,901
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,842
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1406
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,628
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,040
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,886
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 2013
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,568
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,571
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1235
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,296
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1678
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,134
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1288
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,793
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1345
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,372
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,163
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1379
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,751
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder Large duplicate set. size = 1171
INFO 2026-06-08 09:07:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,596
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder Large duplicate set. size = 1365
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,263
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder Large duplicate set. size = 1100
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,006
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder Large duplicate set. size = 2185
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,534
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,339
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,182
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder Large duplicate set. size = 1378
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,654
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,429
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,800
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 09:07:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,158
INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,603
INFO 2026-06-08 09:07:39 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:07:39 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:08:31 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:08:33 MarkDuplicates After generateDuplicateIndexes freeMemory: 203824624; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:08:33 MarkDuplicates Marking 317959463 records as duplicates.
INFO 2026-06-08 09:08:33 MarkDuplicates Found 12841180 optical duplicate clusters.
INFO 2026-06-08 09:08:33 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:08:49 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:23,971,573
INFO 2026-06-08 09:09:04 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:30s. Time for last 10,000,000: 14s. Last read position: chr1:51,765,822
INFO 2026-06-08 09:09:19 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:45s. Time for last 10,000,000: 15s. Last read position: chr1:119,929,177
INFO 2026-06-08 09:09:34 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:01s. Time for last 10,000,000: 15s. Last read position: chr1:154,173,120
INFO 2026-06-08 09:09:50 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:16s. Time for last 10,000,000: 15s. Last read position: chr1:183,116,772
INFO 2026-06-08 09:10:05 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:31s. Time for last 10,000,000: 15s. Last read position: chr1:246,591,645
INFO 2026-06-08 09:10:20 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 15s. Last read position: chr2:32,916,444
INFO 2026-06-08 09:10:36 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:02s. Time for last 10,000,000: 15s. Last read position: chr2:96,861,579
INFO 2026-06-08 09:10:51 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 15s. Last read position: chr2:177,434,407
INFO 2026-06-08 09:11:06 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:32s. Time for last 10,000,000: 15s. Last read position: chr2:215,367,914
INFO 2026-06-08 09:11:21 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 14s. Last read position: chr2:215,384,132
INFO 2026-06-08 09:11:35 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:02s. Time for last 10,000,000: 14s. Last read position: chr2:215,414,861
INFO 2026-06-08 09:11:50 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:17s. Time for last 10,000,000: 15s. Last read position: chr2:236,580,697
INFO 2026-06-08 09:12:06 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:32s. Time for last 10,000,000: 15s. Last read position: chr3:47,056,836
INFO 2026-06-08 09:12:22 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:48s. Time for last 10,000,000: 16s. Last read position: chr3:120,348,909
INFO 2026-06-08 09:12:38 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 15s. Last read position: chr3:196,806,626
INFO 2026-06-08 09:12:53 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 15s. Last read position: chr4:99,072,414
INFO 2026-06-08 09:13:08 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 15s. Last read position: chr5:39,381,511
INFO 2026-06-08 09:13:24 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:50s. Time for last 10,000,000: 15s. Last read position: chr5:150,117,674
INFO 2026-06-08 09:13:39 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:06s. Time for last 10,000,000: 15s. Last read position: chr6:3,153,971
INFO 2026-06-08 09:13:55 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:21s. Time for last 10,000,000: 15s. Last read position: chr6:33,416,767
INFO 2026-06-08 09:14:11 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 15s. Last read position: chr6:117,575,206
INFO 2026-06-08 09:14:26 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 15s. Last read position: chr7:5,527,745
INFO 2026-06-08 09:14:41 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:07s. Time for last 10,000,000: 15s. Last read position: chr7:75,992,249
INFO 2026-06-08 09:14:56 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:23s. Time for last 10,000,000: 15s. Last read position: chr7:102,506,760
INFO 2026-06-08 09:15:12 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:38s. Time for last 10,000,000: 15s. Last read position: chr8:17,645,871
INFO 2026-06-08 09:15:27 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:53s. Time for last 10,000,000: 15s. Last read position: chr8:66,843,477
INFO 2026-06-08 09:15:42 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:09s. Time for last 10,000,000: 15s. Last read position: chr8:140,674,341
INFO 2026-06-08 09:15:58 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:24s. Time for last 10,000,000: 15s. Last read position: chr9:68,391,557
INFO 2026-06-08 09:16:13 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:39s. Time for last 10,000,000: 15s. Last read position: chr9:131,504,188
INFO 2026-06-08 09:16:28 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:54s. Time for last 10,000,000: 15s. Last read position: chr10:44,380,771
INFO 2026-06-08 09:16:44 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 15s. Last read position: chr10:114,970,394
INFO 2026-06-08 09:16:59 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:25s. Time for last 10,000,000: 14s. Last read position: chr11:1,254,304
INFO 2026-06-08 09:17:14 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:40s. Time for last 10,000,000: 15s. Last read position: chr11:57,705,043
INFO 2026-06-08 09:17:29 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:56s. Time for last 10,000,000: 15s. Last read position: chr11:65,526,774
INFO 2026-06-08 09:17:45 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:12s. Time for last 10,000,000: 16s. Last read position: chr11:108,332,011
INFO 2026-06-08 09:18:02 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 16s. Last read position: chr12:31,100,648
INFO 2026-06-08 09:18:18 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:44s. Time for last 10,000,000: 15s. Last read position: chr12:57,206,521
INFO 2026-06-08 09:18:33 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:59s. Time for last 10,000,000: 15s. Last read position: chr12:124,325,431
INFO 2026-06-08 09:18:48 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:14s. Time for last 10,000,000: 15s. Last read position: chr13:113,320,416
INFO 2026-06-08 09:19:05 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:31s. Time for last 10,000,000: 16s. Last read position: chr14:74,781,623
INFO 2026-06-08 09:19:20 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:47s. Time for last 10,000,000: 15s. Last read position: chr15:39,584,359
INFO 2026-06-08 09:19:36 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:02s. Time for last 10,000,000: 15s. Last read position: chr15:74,035,719
INFO 2026-06-08 09:19:52 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:18s. Time for last 10,000,000: 15s. Last read position: chr16:2,762,332
INFO 2026-06-08 09:20:07 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:34s. Time for last 10,000,000: 15s. Last read position: chr16:21,888,017
INFO 2026-06-08 09:20:24 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:50s. Time for last 10,000,000: 16s. Last read position: chr16:57,744,420
INFO 2026-06-08 09:20:40 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 15s. Last read position: chr17:7,312,311
INFO 2026-06-08 09:20:55 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:21s. Time for last 10,000,000: 15s. Last read position: chr17:38,771,012
INFO 2026-06-08 09:21:11 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:37s. Time for last 10,000,000: 15s. Last read position: chr17:50,185,520
INFO 2026-06-08 09:21:27 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:53s. Time for last 10,000,000: 16s. Last read position: chr17:50,189,502
INFO 2026-06-08 09:21:43 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:09s. Time for last 10,000,000: 16s. Last read position: chr17:50,194,413
INFO 2026-06-08 09:21:59 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:25s. Time for last 10,000,000: 15s. Last read position: chr17:50,199,267
INFO 2026-06-08 09:22:15 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:41s. Time for last 10,000,000: 15s. Last read position: chr17:75,630,238
INFO 2026-06-08 09:22:31 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:57s. Time for last 10,000,000: 16s. Last read position: chr18:12,706,549
INFO 2026-06-08 09:22:47 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:13s. Time for last 10,000,000: 15s. Last read position: chr19:2,120,863
INFO 2026-06-08 09:23:03 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:29s. Time for last 10,000,000: 16s. Last read position: chr19:18,175,603
INFO 2026-06-08 09:23:19 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:45s. Time for last 10,000,000: 16s. Last read position: chr19:48,861,458
INFO 2026-06-08 09:23:36 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:02s. Time for last 10,000,000: 16s. Last read position: chr20:34,929,088
INFO 2026-06-08 09:23:53 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:19s. Time for last 10,000,000: 16s. Last read position: chr21:8,399,864
INFO 2026-06-08 09:24:10 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:36s. Time for last 10,000,000: 16s. Last read position: chr22:21,209,359
INFO 2026-06-08 09:24:26 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:52s. Time for last 10,000,000: 16s. Last read position: chr22:39,521,935
INFO 2026-06-08 09:24:42 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:08s. Time for last 10,000,000: 15s. Last read position: chrX:53,547,690
INFO 2026-06-08 09:24:58 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:24s. Time for last 10,000,000: 15s. Last read position: chrX:155,033,442
INFO 2026-06-08 09:25:11 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:25:11 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:25:11 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:25:11 MarkDuplicates Before output close freeMemory: 203796024; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:25:11 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:25:11 MarkDuplicates After output close freeMemory: 104036216; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:25:11 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.40 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory