File Info

Filename
run_level_intermediate.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/ea91185c0251ae3fa8d26f017d8516/run_level_intermediate.tsv
Size
2.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:RUN_LEVEL_INTERMEDIATE (run_level_qc)
Attempt

Content

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SAMPLE_ID SOURCE_QC ANALYTE PIPELINE_VERSION QC_METRIC VALUE METRIC_ORIGIN
RUN RNA rnafusion_3.0.2-gunknown CLUSTER_DENSITY 9457.29 bclconvert
RUN RNA rnafusion_3.0.2-gunknown READS_PASSING_FILTER_PERCENT 74.3552 bclconvert
RUN RNA rnafusion_3.0.2-gunknown Q30_RUN_WIDE_PERCENT 94.1083 bclconvert
RUN RNA rnafusion_3.0.2-gunknown OCCUPANCY_RATE 85.8466 bclconvert
RUN RNA rnafusion_3.0.2-gunknown YIELD_IN_GB 9160.307995662 bclconvert
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 770134999 bclconvert
NTC_0001_0001_A23WKFTLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS 42654 bclconvert
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 590477700.0 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.944616 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.977593 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.046602 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.022407 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 335519408.0 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 170605181.0 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 16552720.0 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 3910401.0 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 283752121.0 star
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.005283 star
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 172.0 kallisto
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.017 kallisto
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 5.752 kallisto
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 61.46 contamination
NTC_0001_0001_A23WKFTLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 2660.0 seqtools
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_ALL_RNA_FUSIONS 70 fusion
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_TRUE_RNA_FUSIONS 0 fusion
FFPE_HD789_01_RNA_13_A23WKFTLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_FALSE_RNA_FUSIONS 70 fusion
28 rows