Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:35:39.678 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:35:39 GMT 2026] MarkDuplicates --INPUT BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:35:39 GMT 2026] Executing as ?@nf-047937e8692a82b04649fd4725fef498-76723-56jkp on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:35:39 MarkDuplicates Start of doWork freeMemory: 105831424; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:35:39 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:35:39 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,636,006
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 2671 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:8,330,469
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 5191 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:11,925,491
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 7499 as yet unmatched pairs. 23 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:16,577,261
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 9606 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:20,749,723
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 12094 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,036
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 14743 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:24,391,660
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 16748 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:27,414,844
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 18932 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:31,579,202
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 21185 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:34,988,707
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 23733 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:37,969,636
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 26075 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:41,362,116
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 28359 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:44,776,673
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 31369 as yet unmatched pairs. 563 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:51,789,313
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 33216 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:61,455,304
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 35610 as yet unmatched pairs. 119 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:78,648,144
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 37648 as yet unmatched pairs. 13 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:94,517,045
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 39766 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:108,648,717
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 42015 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:111,691,371
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 44403 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:114,733,745
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 46883 as yet unmatched pairs. 453 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:119,917,675
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 49743 as yet unmatched pairs. 1055 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:119,968,168
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 51888 as yet unmatched pairs. 719 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:144,429,717
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 53004 as yet unmatched pairs. 652 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:146,097,873
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 53725 as yet unmatched pairs. 29 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:148,104,101
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 54724 as yet unmatched pairs. 29 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:148,967,784
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 55773 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,156
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 56912 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:150,505,657
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 58843 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:151,054,307
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 61267 as yet unmatched pairs. 334 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:152,032,778
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 63348 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:153,975,852
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 65950 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:154,273,464
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 68078 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:155,016,638
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 70099 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,052
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 72300 as yet unmatched pairs. 247 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:155,380,040
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 74234 as yet unmatched pairs. 341 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:156,015,036
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 76373 as yet unmatched pairs. 442 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:156,467,559
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 78873 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:159,918,776
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 81114 as yet unmatched pairs. 266 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:161,049,219
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 83270 as yet unmatched pairs. 130 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,920
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 85664 as yet unmatched pairs. 532 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:165,649,838
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 87270 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:169,468,197
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 90134 as yet unmatched pairs. 672 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:172,666,438
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 91608 as yet unmatched pairs. 30 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:180,111,057
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 93850 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:183,515,953
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 96273 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:186,345,602
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 98556 as yet unmatched pairs. 489 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:200,832,329
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 100348 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:203,007,434
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 102590 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:204,954,237
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 104721 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:208,031,611
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 106762 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:215,086,620
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 108992 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:222,630,373
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 111047 as yet unmatched pairs. 43 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:225,507,137
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 113382 as yet unmatched pairs. 261 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:227,029,046
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 115169 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:229,432,073
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 117892 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:235,113,803
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 120409 as yet unmatched pairs. 187 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:244,053,789
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 122768 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:248,847,393
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 124619 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr2:15,308,312
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 126953 as yet unmatched pairs. 126035 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:24,918,634
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 129132 as yet unmatched pairs. 128202 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:28,752,118
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 132668 as yet unmatched pairs. 131724 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,260
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 179910 as yet unmatched pairs. 131195 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 764025 as yet unmatched pairs. 116463 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 1100162 as yet unmatched pairs. 107974 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,414
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 1136760 as yet unmatched pairs. 107303 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr2:42,353,334
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 1165152 as yet unmatched pairs. 104795 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:53,801,459
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 1163079 as yet unmatched pairs. 102681 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:58,084,086
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 1160689 as yet unmatched pairs. 100277 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:69,040,097
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 1158872 as yet unmatched pairs. 98439 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:74,135,493
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 1156363 as yet unmatched pairs. 95918 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:85,647,969
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 1154028 as yet unmatched pairs. 93577 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:96,015,214
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 1152354 as yet unmatched pairs. 91883 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:98,396,748
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 1150181 as yet unmatched pairs. 89699 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:106,094,130
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 1147940 as yet unmatched pairs. 87419 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:109,567,858
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 1146607 as yet unmatched pairs. 86084 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:112,433,376
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 1145547 as yet unmatched pairs. 84999 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:127,335,960
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 1143673 as yet unmatched pairs. 83120 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:131,605,545
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 1141706 as yet unmatched pairs. 81135 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:151,465,526
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 1139762 as yet unmatched pairs. 79174 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:151,639,984
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 1138434 as yet unmatched pairs. 77844 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:159,748,067
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 1136448 as yet unmatched pairs. 75836 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:171,061,086
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 1134255 as yet unmatched pairs. 73626 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:177,264,540
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 1132103 as yet unmatched pairs. 71442 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:178,546,832
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 1130172 as yet unmatched pairs. 69506 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:178,567,582
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 1128309 as yet unmatched pairs. 67640 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:178,587,990
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 1126049 as yet unmatched pairs. 65371 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:178,612,453
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 1123907 as yet unmatched pairs. 63221 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:178,654,770
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 1123296 as yet unmatched pairs. 62594 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:178,717,754
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 1120503 as yet unmatched pairs. 59788 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:178,773,114
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 1118238 as yet unmatched pairs. 57521 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:182,964,678
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 1116297 as yet unmatched pairs. 55571 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:188,994,541
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 1114157 as yet unmatched pairs. 53402 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:189,006,423
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 1111564 as yet unmatched pairs. 50792 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:189,075,425
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 1108712 as yet unmatched pairs. 47938 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:197,493,379
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 1106268 as yet unmatched pairs. 45481 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:203,470,143
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 1104231 as yet unmatched pairs. 43430 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,562
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 1108064 as yet unmatched pairs. 47240 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,983
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 1104239 as yet unmatched pairs. 43413 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,204
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 1104686 as yet unmatched pairs. 43829 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,365
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 1101211 as yet unmatched pairs. 40353 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,158
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 1096865 as yet unmatched pairs. 36007 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,454
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 1094066 as yet unmatched pairs. 33205 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:215,388,228
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 1100408 as yet unmatched pairs. 39546 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,685
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 1090456 as yet unmatched pairs. 29589 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,379
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 1087631 as yet unmatched pairs. 26763 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,563
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 1094146 as yet unmatched pairs. 33272 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,419,273
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 1084516 as yet unmatched pairs. 23640 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:215,425,121
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 1083299 as yet unmatched pairs. 22414 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,348
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 1082044 as yet unmatched pairs. 21156 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:217,900,482
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 1074675 as yet unmatched pairs. 13778 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:219,541,839
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 1071999 as yet unmatched pairs. 11091 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:231,123,707
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 1069872 as yet unmatched pairs. 8916 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:235,741,000
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 1067748 as yet unmatched pairs. 6780 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:237,377,131
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 1065541 as yet unmatched pairs. 4564 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:240,891,613
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 1062753 as yet unmatched pairs. 1742 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:5,122,456
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 1060448 as yet unmatched pairs. 60557 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:12,599,731
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 1058581 as yet unmatched pairs. 58675 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:20,101,318
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 1055773 as yet unmatched pairs. 55819 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:36,831,870
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 1053701 as yet unmatched pairs. 53745 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:41,224,019
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 1052126 as yet unmatched pairs. 52156 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:46,455,313
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 1049332 as yet unmatched pairs. 49338 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:47,921,787
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 1047386 as yet unmatched pairs. 47387 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:49,104,398
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 1044630 as yet unmatched pairs. 44621 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:49,691,189
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 1042114 as yet unmatched pairs. 42100 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:51,970,130
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 1039564 as yet unmatched pairs. 39540 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:52,739,544
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 1037101 as yet unmatched pairs. 37056 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:58,131,968
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 1034828 as yet unmatched pairs. 34772 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:71,001,048
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 1032591 as yet unmatched pairs. 32494 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:100,736,690
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 1030829 as yet unmatched pairs. 30717 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:112,563,401
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 1028371 as yet unmatched pairs. 28253 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:121,691,510
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 1026380 as yet unmatched pairs. 26243 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:124,763,691
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 1024232 as yet unmatched pairs. 24081 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:128,879,629
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 1021722 as yet unmatched pairs. 21556 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:130,969,341
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 1019287 as yet unmatched pairs. 19099 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:139,358,227
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 1017269 as yet unmatched pairs. 17067 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:149,527,836
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 1015184 as yet unmatched pairs. 14953 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:160,399,719
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 1012887 as yet unmatched pairs. 12599 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:172,760,176
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 1011266 as yet unmatched pairs. 10967 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:183,982,435
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 1008981 as yet unmatched pairs. 8672 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:184,331,561
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 1006814 as yet unmatched pairs. 6493 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,199
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 1004955 as yet unmatched pairs. 4589 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:196,055,101
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 1002189 as yet unmatched pairs. 1814 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr4:912,771
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 999887 as yet unmatched pairs. 30605 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:2,646,698
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 997425 as yet unmatched pairs. 28116 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr4:6,923,587
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 994835 as yet unmatched pairs. 25519 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:22,727,403
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 992473 as yet unmatched pairs. 23153 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:40,823,737
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 990363 as yet unmatched pairs. 21022 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:57,031,250
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 988841 as yet unmatched pairs. 19478 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:76,161,620
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 986135 as yet unmatched pairs. 16736 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:86,935,205
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 983833 as yet unmatched pairs. 14409 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:98,881,052
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 981986 as yet unmatched pairs. 12556 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:118,815,711
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 979976 as yet unmatched pairs. 10527 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:139,698,439
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 977990 as yet unmatched pairs. 8525 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:150,079,240
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 975736 as yet unmatched pairs. 6247 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:157,312,753
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 973878 as yet unmatched pairs. 4377 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:168,878,130
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 971700 as yet unmatched pairs. 2183 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr5:254,394
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 969605 as yet unmatched pairs. 68510 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr5:10,680,809
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 967208 as yet unmatched pairs. 66094 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:14,492,645
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 964996 as yet unmatched pairs. 63877 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr5:35,065,459
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 962678 as yet unmatched pairs. 61535 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr5:42,719,125
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 960541 as yet unmatched pairs. 59377 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:56,504,773
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 958332 as yet unmatched pairs. 57157 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:67,164,886
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 956134 as yet unmatched pairs. 54950 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:70,229,081
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 955057 as yet unmatched pairs. 53855 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:71,509,972
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 954232 as yet unmatched pairs. 53027 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:77,708,316
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 952019 as yet unmatched pairs. 50789 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:83,538,355
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 950068 as yet unmatched pairs. 48818 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:96,746,337
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 948076 as yet unmatched pairs. 46819 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:112,841,583
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 945840 as yet unmatched pairs. 44559 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:128,134,265
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 943727 as yet unmatched pairs. 42445 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:134,173,937
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 941674 as yet unmatched pairs. 40387 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:135,571,049
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 950222 as yet unmatched pairs. 48927 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:135,578,748
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 939746 as yet unmatched pairs. 38448 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,742
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 934460 as yet unmatched pairs. 33146 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:140,526,235
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 932166 as yet unmatched pairs. 30747 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:141,524,214
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 929799 as yet unmatched pairs. 28380 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:149,307,423
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 927608 as yet unmatched pairs. 26183 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,103
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 929373 as yet unmatched pairs. 27943 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,121
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 927417 as yet unmatched pairs. 25967 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,124
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 931981 as yet unmatched pairs. 30531 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,290
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 918029 as yet unmatched pairs. 16564 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:151,674,647
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 915212 as yet unmatched pairs. 13741 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:168,428,127
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 912849 as yet unmatched pairs. 11358 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:172,406,168
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 910744 as yet unmatched pairs. 9240 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:177,303,998
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 908547 as yet unmatched pairs. 7038 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,699,078
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 906235 as yet unmatched pairs. 4721 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,483
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 904343 as yet unmatched pairs. 2826 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr6:3,123,730
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 900963 as yet unmatched pairs. 55971 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:10,400,454
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 899108 as yet unmatched pairs. 54102 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:17,828,351
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 896424 as yet unmatched pairs. 51409 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr6:27,132,612
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 894234 as yet unmatched pairs. 49218 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:30,491,189
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 892367 as yet unmatched pairs. 47339 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:31,270,386
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 890573 as yet unmatched pairs. 45543 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:31,641,568
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 887535 as yet unmatched pairs. 42495 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,911
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 886171 as yet unmatched pairs. 41128 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,453
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 884875 as yet unmatched pairs. 39825 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,996,279
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 883658 as yet unmatched pairs. 38602 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:32,115,932
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 881248 as yet unmatched pairs. 36175 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:32,937,331
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 878950 as yet unmatched pairs. 33876 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:33,304,446
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 876858 as yet unmatched pairs. 31784 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:34,871,065
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 874160 as yet unmatched pairs. 29075 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:41,909,358
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 871917 as yet unmatched pairs. 26814 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:43,984,651
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 869439 as yet unmatched pairs. 24328 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:53,498,906
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 867569 as yet unmatched pairs. 22434 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:71,301,960
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 865875 as yet unmatched pairs. 20730 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:75,862,603
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 863484 as yet unmatched pairs. 18323 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:89,862,511
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 861216 as yet unmatched pairs. 16032 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:113,300,325
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 859042 as yet unmatched pairs. 13841 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:131,596,629
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 856867 as yet unmatched pairs. 11653 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:143,765,512
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 854545 as yet unmatched pairs. 9322 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr6:151,808,337
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 852902 as yet unmatched pairs. 7629 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr6:157,201,124
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 849945 as yet unmatched pairs. 4651 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:160,104,994
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 847503 as yet unmatched pairs. 2205 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr7:517,449
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 845246 as yet unmatched pairs. 58030 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr7:5,313,688
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 842673 as yet unmatched pairs. 55448 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,283
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 841383 as yet unmatched pairs. 54152 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr7:6,170,932
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 837566 as yet unmatched pairs. 50325 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:20,809,098
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 835295 as yet unmatched pairs. 48040 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:32,488,639
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 833026 as yet unmatched pairs. 45761 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:44,040,352
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 830782 as yet unmatched pairs. 43513 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:45,101,528
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 828601 as yet unmatched pairs. 41332 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:67,278,718
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 826634 as yet unmatched pairs. 39357 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:73,693,994
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 825312 as yet unmatched pairs. 38015 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,636
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 823847 as yet unmatched pairs. 36546 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:76,304,042
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 822828 as yet unmatched pairs. 35523 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:87,195,072
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 819577 as yet unmatched pairs. 32269 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:92,107,346
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 818180 as yet unmatched pairs. 30846 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr7:94,408,360
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 816692 as yet unmatched pairs. 29354 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:94,423,061
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 812981 as yet unmatched pairs. 25639 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:98,221,712
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 809775 as yet unmatched pairs. 22424 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,098,194
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 807498 as yet unmatched pairs. 20147 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:100,881,339
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 804860 as yet unmatched pairs. 17498 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:102,560,881
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 803868 as yet unmatched pairs. 16502 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:106,093,081
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 802441 as yet unmatched pairs. 15062 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:122,681,501
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 799979 as yet unmatched pairs. 12589 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:128,862,907
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 797836 as yet unmatched pairs. 10436 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:138,515,225
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 795802 as yet unmatched pairs. 8366 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:141,929,863
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 793753 as yet unmatched pairs. 6310 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:148,792,734
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 792099 as yet unmatched pairs. 4652 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:151,480,343
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 789462 as yet unmatched pairs. 2010 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr8:2,001,437
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 787282 as yet unmatched pairs. 44789 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr8:17,953,174
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 785402 as yet unmatched pairs. 42899 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr8:23,851,391
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 782734 as yet unmatched pairs. 40228 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr8:37,899,148
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 780424 as yet unmatched pairs. 37906 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr8:39,082,916
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 778364 as yet unmatched pairs. 35844 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr8:47,826,667
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 775893 as yet unmatched pairs. 33369 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr8:58,580,566
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 773738 as yet unmatched pairs. 31206 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr8:70,138,236
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 771631 as yet unmatched pairs. 29082 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr8:80,984,894
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 769468 as yet unmatched pairs. 26909 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr8:96,494,267
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 767297 as yet unmatched pairs. 24720 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr8:100,717,844
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 766625 as yet unmatched pairs. 24042 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr8:108,203,089
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 763819 as yet unmatched pairs. 21218 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 62s. Last read position: chr8:115,619,417
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 761538 as yet unmatched pairs. 18915 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr8:124,553,557
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 758686 as yet unmatched pairs. 16057 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr8:140,547,596
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 756432 as yet unmatched pairs. 13781 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,728,582
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 753713 as yet unmatched pairs. 11049 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,414
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 752199 as yet unmatched pairs. 9527 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,720
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 750948 as yet unmatched pairs. 8276 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,872,648
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 750141 as yet unmatched pairs. 7468 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,938,045
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 747158 as yet unmatched pairs. 4483 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr8:144,425,689
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 744210 as yet unmatched pairs. 1520 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 2s. Last read position: chr9:4,841,264
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 741758 as yet unmatched pairs. 37570 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr9:21,970,902
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 739712 as yet unmatched pairs. 35508 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr9:35,059,541
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 737662 as yet unmatched pairs. 33427 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr9:37,429,798
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 734950 as yet unmatched pairs. 30686 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr9:76,549,384
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 733355 as yet unmatched pairs. 29083 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr9:92,079,468
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 731213 as yet unmatched pairs. 26930 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr9:96,910,360
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 729059 as yet unmatched pairs. 24775 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr9:108,939,548
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 727003 as yet unmatched pairs. 22710 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr9:114,597,621
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 724719 as yet unmatched pairs. 20419 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr9:121,341,232
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 723115 as yet unmatched pairs. 18807 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr9:127,091,859
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 720083 as yet unmatched pairs. 15766 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 2s. Last read position: chr9:128,566,805
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 717738 as yet unmatched pairs. 13417 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr9:130,390,976
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 714989 as yet unmatched pairs. 10667 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:132,687,283
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 712917 as yet unmatched pairs. 8578 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr9:134,804,976
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 710741 as yet unmatched pairs. 6402 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr9:136,792,861
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 708048 as yet unmatched pairs. 3696 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:137,436,082
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 705235 as yet unmatched pairs. 883 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr10:5,749,059
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 702870 as yet unmatched pairs. 36482 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr10:14,521,899
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 700677 as yet unmatched pairs. 34273 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr10:24,585,454
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 698419 as yet unmatched pairs. 32002 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr10:32,022,848
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 697499 as yet unmatched pairs. 31075 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr10:43,077,090
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 694374 as yet unmatched pairs. 27941 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr10:43,124,886
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 693159 as yet unmatched pairs. 26725 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr10:46,837,828
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 689987 as yet unmatched pairs. 23553 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr10:67,219,824
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 687961 as yet unmatched pairs. 21515 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr10:73,148,331
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 685701 as yet unmatched pairs. 19251 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr10:77,842,145
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 683521 as yet unmatched pairs. 17055 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr10:87,068,062
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 681654 as yet unmatched pairs. 15182 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr10:93,323,150
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 679481 as yet unmatched pairs. 13009 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr10:97,678,882
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 677194 as yet unmatched pairs. 10715 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr10:102,376,618
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 674965 as yet unmatched pairs. 8477 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr10:113,679,273
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 672541 as yet unmatched pairs. 6041 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr10:119,670,058
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 670428 as yet unmatched pairs. 3915 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr10:126,101,198
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 668151 as yet unmatched pairs. 1631 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr11:293,645
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 666984 as yet unmatched pairs. 76562 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr11:381,691
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 663283 as yet unmatched pairs. 72846 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr11:1,245,682
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 660394 as yet unmatched pairs. 69942 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr11:3,775,976
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 658051 as yet unmatched pairs. 67593 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr11:8,715,763
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 655581 as yet unmatched pairs. 65118 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr11:11,947,952
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 653515 as yet unmatched pairs. 63041 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr11:19,182,668
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 651488 as yet unmatched pairs. 61012 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr11:35,176,587
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 649409 as yet unmatched pairs. 58931 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr11:46,379,469
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 646875 as yet unmatched pairs. 56379 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr11:57,308,776
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 644698 as yet unmatched pairs. 54191 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr11:59,601,706
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 642367 as yet unmatched pairs. 51846 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr11:61,965,082
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 641339 as yet unmatched pairs. 50809 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr11:62,516,985
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 638346 as yet unmatched pairs. 47814 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr11:62,523,411
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 636635 as yet unmatched pairs. 46099 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,839
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 635148 as yet unmatched pairs. 44612 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr11:62,566,831
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 632183 as yet unmatched pairs. 41646 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr11:63,903,025
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 629730 as yet unmatched pairs. 39188 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:64,912,327
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 627179 as yet unmatched pairs. 36632 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:65,617,940
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 624449 as yet unmatched pairs. 33887 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:66,315,543
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 621798 as yet unmatched pairs. 31235 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:67,612,247
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 619353 as yet unmatched pairs. 28790 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr11:70,332,070
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 616840 as yet unmatched pairs. 26274 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr11:72,097,772
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 614742 as yet unmatched pairs. 24172 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr11:73,887,363
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 611881 as yet unmatched pairs. 21297 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:75,404,679
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 611032 as yet unmatched pairs. 20438 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:76,796,060
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 607669 as yet unmatched pairs. 17073 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:77,891,708
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 605228 as yet unmatched pairs. 14625 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:78,478,441
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 603305 as yet unmatched pairs. 12701 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:95,776,009
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 600851 as yet unmatched pairs. 10235 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:111,911,714
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 598528 as yet unmatched pairs. 7909 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:118,628,062
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 596402 as yet unmatched pairs. 5777 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:121,605,156
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 594174 as yet unmatched pairs. 3531 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:128,969,962
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 592070 as yet unmatched pairs. 1424 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr12:883,433
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 590216 as yet unmatched pairs. 78154 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr12:6,075,456
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 587765 as yet unmatched pairs. 75690 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr12:6,602,482
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 585604 as yet unmatched pairs. 73528 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr12:7,130,553
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 583095 as yet unmatched pairs. 71016 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr12:11,869,445
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 580918 as yet unmatched pairs. 68831 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr12:15,660,719
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 578860 as yet unmatched pairs. 66758 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr12:27,969,399
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 576643 as yet unmatched pairs. 64534 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr12:40,444,169
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 574819 as yet unmatched pairs. 62704 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr12:40,485,208
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 573685 as yet unmatched pairs. 61566 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr12:40,488,228
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 572895 as yet unmatched pairs. 60776 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:40,510,836
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 568325 as yet unmatched pairs. 56203 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr12:40,570,537
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 566634 as yet unmatched pairs. 54510 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr12:47,794,769
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 564003 as yet unmatched pairs. 51875 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,165
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 561657 as yet unmatched pairs. 49517 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:49,641,983
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 559842 as yet unmatched pairs. 47702 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr12:51,991,873
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 557718 as yet unmatched pairs. 45566 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:53,299,743
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 555251 as yet unmatched pairs. 43096 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:54,343,225
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 553647 as yet unmatched pairs. 41491 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr12:56,101,283
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 551591 as yet unmatched pairs. 39432 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:56,311,347
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 548775 as yet unmatched pairs. 36607 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr12:56,718,940
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 546643 as yet unmatched pairs. 34473 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr12:57,175,952
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 544396 as yet unmatched pairs. 32226 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:57,595,898
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 541897 as yet unmatched pairs. 29725 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:66,152,276
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 540069 as yet unmatched pairs. 27896 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr12:76,060,207
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 538078 as yet unmatched pairs. 25898 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:92,883,871
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 535588 as yet unmatched pairs. 23402 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:101,295,540
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 533440 as yet unmatched pairs. 21253 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:104,031,107
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 531294 as yet unmatched pairs. 19100 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:109,983,459
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 529305 as yet unmatched pairs. 17100 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:112,194,924
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 526751 as yet unmatched pairs. 14539 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:114,672,103
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 524427 as yet unmatched pairs. 12210 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:120,158,486
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 522210 as yet unmatched pairs. 9980 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:121,822,659
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 519941 as yet unmatched pairs. 7705 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:123,606,072
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 517543 as yet unmatched pairs. 5306 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:130,875,609
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 515326 as yet unmatched pairs. 3076 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:132,926,898
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 512451 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr13:27,581,527
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 510496 as yet unmatched pairs. 12209 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr13:37,584,716
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 508842 as yet unmatched pairs. 10549 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr13:46,553,297
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 506100 as yet unmatched pairs. 7795 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr13:75,804,430
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 503941 as yet unmatched pairs. 5627 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr13:100,515,376
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 501825 as yet unmatched pairs. 3489 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr13:113,233,967
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 499350 as yet unmatched pairs. 1008 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr14:21,213,087
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 497234 as yet unmatched pairs. 38949 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr14:23,062,946
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 494672 as yet unmatched pairs. 36386 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr14:24,164,759
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 492312 as yet unmatched pairs. 34026 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr14:31,178,036
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 489777 as yet unmatched pairs. 31486 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr14:39,176,557
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 487667 as yet unmatched pairs. 29366 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr14:50,760,056
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 485513 as yet unmatched pairs. 27202 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr14:55,672,972
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 483809 as yet unmatched pairs. 25498 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr14:64,122,418
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 481268 as yet unmatched pairs. 22955 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr14:68,877,125
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 479017 as yet unmatched pairs. 20700 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr14:73,292,779
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 476571 as yet unmatched pairs. 18253 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr14:75,546,461
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 474199 as yet unmatched pairs. 15879 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr14:90,400,082
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 472138 as yet unmatched pairs. 13807 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr14:94,115,923
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 471156 as yet unmatched pairs. 12820 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr14:99,502,782
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 467391 as yet unmatched pairs. 9028 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr14:102,005,912
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 465266 as yet unmatched pairs. 6894 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr14:103,386,020
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 463013 as yet unmatched pairs. 4638 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr14:105,143,021
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 460427 as yet unmatched pairs. 2048 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr15:20,431,134
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 458429 as yet unmatched pairs. 29791 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr15:29,268,954
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 456607 as yet unmatched pairs. 27968 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr15:39,581,868
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 454803 as yet unmatched pairs. 26162 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr15:41,070,467
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 452256 as yet unmatched pairs. 23609 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr15:43,029,958
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 449944 as yet unmatched pairs. 21295 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr15:44,711,531
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 448048 as yet unmatched pairs. 19390 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr15:50,648,807
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 445792 as yet unmatched pairs. 17127 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr15:58,611,810
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 443558 as yet unmatched pairs. 14885 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr15:63,729,246
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 441344 as yet unmatched pairs. 12669 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr15:68,351,330
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 439025 as yet unmatched pairs. 10347 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr15:73,949,550
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 436634 as yet unmatched pairs. 7953 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr15:77,998,232
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 434262 as yet unmatched pairs. 5575 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr15:85,579,017
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 432276 as yet unmatched pairs. 3585 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr15:92,711,816
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 429929 as yet unmatched pairs. 1226 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr16:377,036
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 428042 as yet unmatched pairs. 64699 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr16:788,159
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 424778 as yet unmatched pairs. 61435 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr16:1,758,057
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 422044 as yet unmatched pairs. 58696 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr16:2,103,461
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 418896 as yet unmatched pairs. 55534 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr16:2,634,621
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 416351 as yet unmatched pairs. 52984 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr16:2,830,413
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 414291 as yet unmatched pairs. 50923 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr16:3,810,672
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 411770 as yet unmatched pairs. 48399 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr16:8,796,225
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 409049 as yet unmatched pairs. 45677 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr16:11,929,045
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 407053 as yet unmatched pairs. 43674 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr16:14,918,709
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 405603 as yet unmatched pairs. 42224 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr16:15,128,344
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 404420 as yet unmatched pairs. 41041 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr16:16,319,949
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 403214 as yet unmatched pairs. 39835 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr16:16,383,670
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 402955 as yet unmatched pairs. 39576 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr16:18,368,278
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 402254 as yet unmatched pairs. 38871 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr16:18,798,003
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 401083 as yet unmatched pairs. 37699 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,439
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 398450 as yet unmatched pairs. 35058 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,676
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 397550 as yet unmatched pairs. 34158 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr16:22,454,718
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 396653 as yet unmatched pairs. 33259 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,229
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 396135 as yet unmatched pairs. 32741 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr16:28,156,427
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 394036 as yet unmatched pairs. 30642 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr16:28,873,470
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 392099 as yet unmatched pairs. 28705 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,366
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 391686 as yet unmatched pairs. 28292 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:29,901,458
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 389346 as yet unmatched pairs. 25952 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,661
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 387517 as yet unmatched pairs. 24117 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr16:30,709,650
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 385822 as yet unmatched pairs. 22419 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:31,132,719
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 383312 as yet unmatched pairs. 19902 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr16:46,682,106
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 381025 as yet unmatched pairs. 17612 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:55,485,620
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 378588 as yet unmatched pairs. 15172 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:64,998,458
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 376377 as yet unmatched pairs. 12956 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:68,275,093
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 373745 as yet unmatched pairs. 10322 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:70,568,281
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 371555 as yet unmatched pairs. 8118 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:80,710,700
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 369154 as yet unmatched pairs. 5716 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:88,435,738
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 366853 as yet unmatched pairs. 3414 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:89,769,920
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 363923 as yet unmatched pairs. 480 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr17:1,732,805
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 361380 as yet unmatched pairs. 149049 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr17:4,818,502
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 359041 as yet unmatched pairs. 146703 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr17:7,246,106
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 356760 as yet unmatched pairs. 144420 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr17:7,580,484
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 354626 as yet unmatched pairs. 142285 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr17:10,512,719
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 352345 as yet unmatched pairs. 140003 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr17:17,383,545
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 350028 as yet unmatched pairs. 137686 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr17:22,204,543
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 347572 as yet unmatched pairs. 135228 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr17:29,094,651
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 345311 as yet unmatched pairs. 132967 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr17:31,304,285
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 343295 as yet unmatched pairs. 130938 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr17:35,809,542
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 341566 as yet unmatched pairs. 129204 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr17:37,284,908
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 339108 as yet unmatched pairs. 126746 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,099
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 337956 as yet unmatched pairs. 125594 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr17:39,665,414
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 335061 as yet unmatched pairs. 122699 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,290
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 334913 as yet unmatched pairs. 122536 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr17:39,724,752
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 331932 as yet unmatched pairs. 119555 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr17:40,036,136
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 327654 as yet unmatched pairs. 115277 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr17:40,630,795
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 325301 as yet unmatched pairs. 112924 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr17:41,769,081
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 322367 as yet unmatched pairs. 109990 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr17:42,317,195
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 320262 as yet unmatched pairs. 107882 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr17:43,013,512
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 317641 as yet unmatched pairs. 105259 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:44,350,695
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 315529 as yet unmatched pairs. 103147 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr17:46,171,002
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 313136 as yet unmatched pairs. 100750 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr17:47,838,987
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 311235 as yet unmatched pairs. 98846 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,109,987
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 308845 as yet unmatched pairs. 96446 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,916
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 308923 as yet unmatched pairs. 96520 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,737
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 311411 as yet unmatched pairs. 99008 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,049
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 314595 as yet unmatched pairs. 102192 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,927
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 307363 as yet unmatched pairs. 94959 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,557
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 308157 as yet unmatched pairs. 95752 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,912
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 311236 as yet unmatched pairs. 98831 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,402
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 301382 as yet unmatched pairs. 88977 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,685
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 308194 as yet unmatched pairs. 95789 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,051
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 303690 as yet unmatched pairs. 91274 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,841
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 288662 as yet unmatched pairs. 76246 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,844
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 291283 as yet unmatched pairs. 78867 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,674
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 291990 as yet unmatched pairs. 79574 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,950
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 288506 as yet unmatched pairs. 76089 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,169
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 293766 as yet unmatched pairs. 81348 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,720
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 279131 as yet unmatched pairs. 66713 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,231
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 278033 as yet unmatched pairs. 65603 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,602
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 287322 as yet unmatched pairs. 74892 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,185
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 282536 as yet unmatched pairs. 70106 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,617
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 275090 as yet unmatched pairs. 62660 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,216
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 278150 as yet unmatched pairs. 65720 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,181
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 265403 as yet unmatched pairs. 52973 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,293
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 259131 as yet unmatched pairs. 46696 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,850
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 252187 as yet unmatched pairs. 39752 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,750,797
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 246054 as yet unmatched pairs. 33619 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:59,620,119
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 244167 as yet unmatched pairs. 31731 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:59,946,736
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 241414 as yet unmatched pairs. 28978 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:63,411,493
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 239197 as yet unmatched pairs. 26755 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr17:64,503,488
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 237200 as yet unmatched pairs. 24756 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr17:67,945,784
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 235015 as yet unmatched pairs. 22571 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:68,529,974
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 235095 as yet unmatched pairs. 22651 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:75,130,482
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 230259 as yet unmatched pairs. 17813 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:75,912,191
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 227785 as yet unmatched pairs. 15336 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:78,187,381
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 225316 as yet unmatched pairs. 12860 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:80,278,804
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 222925 as yet unmatched pairs. 10469 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:80,376,940
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 220616 as yet unmatched pairs. 8159 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:81,843,980
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 217788 as yet unmatched pairs. 5329 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:82,085,598
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 214865 as yet unmatched pairs. 2406 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr18:347,127
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 212312 as yet unmatched pairs. 11011 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr18:12,999,456
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 210115 as yet unmatched pairs. 8803 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr18:31,874,506
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 207910 as yet unmatched pairs. 6593 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr18:49,489,425
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 206073 as yet unmatched pairs. 4746 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr18:62,258,588
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 203696 as yet unmatched pairs. 2369 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr19:582,514
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 201606 as yet unmatched pairs. 80397 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,076
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 198973 as yet unmatched pairs. 77763 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr19:3,381,883
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 195523 as yet unmatched pairs. 74311 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 123s. Last read position: chr19:5,212,375
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 192919 as yet unmatched pairs. 71707 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr19:7,267,352
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 190531 as yet unmatched pairs. 69319 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr19:9,828,372
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 188730 as yet unmatched pairs. 67517 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 2s. Last read position: chr19:10,683,417
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 185404 as yet unmatched pairs. 64190 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr19:12,299,805
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 183107 as yet unmatched pairs. 61893 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr19:13,804,912
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 180622 as yet unmatched pairs. 59402 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr19:15,161,514
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 178143 as yet unmatched pairs. 56923 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr19:16,081,913
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 175701 as yet unmatched pairs. 54481 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr19:17,726,858
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 172752 as yet unmatched pairs. 51528 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr19:18,788,854
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 170212 as yet unmatched pairs. 48988 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr19:32,353,743
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 167776 as yet unmatched pairs. 46552 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr19:35,279,193
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 165024 as yet unmatched pairs. 43800 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr19:38,152,928
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 162517 as yet unmatched pairs. 41292 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr19:39,385,557
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 159930 as yet unmatched pairs. 38699 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr19:39,892,143
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 158003 as yet unmatched pairs. 36772 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr19:40,422,770
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 155403 as yet unmatched pairs. 34172 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr19:41,756,939
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 153453 as yet unmatched pairs. 32221 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr19:42,292,752
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 150701 as yet unmatched pairs. 29469 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr19:44,872,078
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 148192 as yet unmatched pairs. 26931 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:45,507,662
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 145396 as yet unmatched pairs. 24133 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr19:46,920,107
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 143047 as yet unmatched pairs. 21784 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 2s. Last read position: chr19:48,478,109
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 140053 as yet unmatched pairs. 18790 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 2s. Last read position: chr19:49,465,828
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 137299 as yet unmatched pairs. 16036 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 2s. Last read position: chr19:49,829,875
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 134900 as yet unmatched pairs. 13637 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr19:52,555,241
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 132387 as yet unmatched pairs. 11123 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:54,454,622
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 130234 as yet unmatched pairs. 8969 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr19:55,386,365
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 128157 as yet unmatched pairs. 6891 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:57,444,826
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 124782 as yet unmatched pairs. 3513 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:57,916,412
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 122944 as yet unmatched pairs. 1675 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr20:1,372,161
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 120764 as yet unmatched pairs. 30927 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr20:3,800,308
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 117971 as yet unmatched pairs. 28132 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr20:17,641,848
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 115999 as yet unmatched pairs. 26159 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr20:24,973,629
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 113689 as yet unmatched pairs. 23849 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr20:33,677,119
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 111153 as yet unmatched pairs. 21312 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr20:35,680,777
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 108847 as yet unmatched pairs. 19006 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr20:38,574,288
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 106326 as yet unmatched pairs. 16485 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 2s. Last read position: chr20:44,904,017
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 103893 as yet unmatched pairs. 14051 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 2s. Last read position: chr20:47,663,087
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 101392 as yet unmatched pairs. 11550 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr20:51,435,212
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 98998 as yet unmatched pairs. 9155 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr20:58,910,021
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 96844 as yet unmatched pairs. 6997 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,008
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 93559 as yet unmatched pairs. 3711 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr20:63,714,928
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 90893 as yet unmatched pairs. 1045 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,082
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 88896 as yet unmatched pairs. 16610 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,079
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 88342 as yet unmatched pairs. 16052 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,569
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 86671 as yet unmatched pairs. 14377 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr21:31,692,297
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 84620 as yet unmatched pairs. 12326 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr21:36,130,554
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 82272 as yet unmatched pairs. 9977 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr21:41,449,235
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 80287 as yet unmatched pairs. 7991 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr21:44,236,815
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 77835 as yet unmatched pairs. 5539 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 2s. Last read position: chr21:46,001,973
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 75162 as yet unmatched pairs. 2859 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr22:11,630,902
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 72305 as yet unmatched pairs. 33139 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr22:20,427,418
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 69800 as yet unmatched pairs. 30633 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 2s. Last read position: chr22:23,295,059
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 67486 as yet unmatched pairs. 28319 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr22:26,027,154
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 64749 as yet unmatched pairs. 25579 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr22:29,260,752
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 62368 as yet unmatched pairs. 23191 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr22:30,617,454
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 59951 as yet unmatched pairs. 20774 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr22:35,421,355
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 57566 as yet unmatched pairs. 18389 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr22:36,316,658
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 55127 as yet unmatched pairs. 15949 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr22:37,805,915
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 53180 as yet unmatched pairs. 14001 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,948
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 50283 as yet unmatched pairs. 11104 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr22:41,160,592
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 47986 as yet unmatched pairs. 8807 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 2s. Last read position: chr22:43,167,919
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 45650 as yet unmatched pairs. 6471 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr22:46,691,592
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 42792 as yet unmatched pairs. 3613 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr22:50,530,764
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 39906 as yet unmatched pairs. 727 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chrX:3,323,918
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 37542 as yet unmatched pairs. 30451 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chrX:17,077,316
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 35567 as yet unmatched pairs. 28476 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chrX:38,804,884
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 33394 as yet unmatched pairs. 26295 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chrX:44,450,907
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 31131 as yet unmatched pairs. 24030 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chrX:48,904,990
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 28879 as yet unmatched pairs. 21777 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chrX:53,536,518
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 26466 as yet unmatched pairs. 19364 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chrX:64,044,669
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 24087 as yet unmatched pairs. 16985 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chrX:71,563,362
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 22109 as yet unmatched pairs. 15007 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chrX:77,697,622
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 20184 as yet unmatched pairs. 13082 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chrX:103,377,778
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 17779 as yet unmatched pairs. 10676 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chrX:118,652,006
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 15742 as yet unmatched pairs. 8639 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 2s. Last read position: chrX:132,214,137
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 14284 as yet unmatched pairs. 7180 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chrX:153,725,597
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 11403 as yet unmatched pairs. 4297 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chrX:154,371,130
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 8849 as yet unmatched pairs. 1743 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: GL000220.1:113,529
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 6847 as yet unmatched pairs. 2028 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,467
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 4862 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,916
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 920 as yet unmatched pairs. 849 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,749
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 78 as yet unmatched pairs. 7 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 586113612 records. 0 pairs never matched.
INFO 2026-06-08 08:55:25 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141312; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:55:25 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:55:30 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:55:30 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder Large duplicate set. size = 2993
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,579
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,411
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder Large duplicate set. size = 1371
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,179
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,054
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder Large duplicate set. size = 1432
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,334
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,242
INFO 2026-06-08 08:55:44 OpticalDuplicateFinder Large duplicate set. size = 1541
INFO 2026-06-08 08:55:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,683
INFO 2026-06-08 08:55:44 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 08:55:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,754
INFO 2026-06-08 08:55:44 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-08 08:55:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,895
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,577
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,149
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder Large duplicate set. size = 1284
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,167
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,427
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 08:55:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,467
INFO 2026-06-08 08:55:46 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 08:55:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,827
INFO 2026-06-08 08:55:54 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 08:55:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,248
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 1298
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,037
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 2350
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,257
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,893
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 1317
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,028
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 1986
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,548
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 1904
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,970
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 3056
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,006
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,030
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,575
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,387
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,771
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,125
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder Large duplicate set. size = 1431
INFO 2026-06-08 08:55:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,922
INFO 2026-06-08 08:55:59 OpticalDuplicateFinder Large duplicate set. size = 1588
INFO 2026-06-08 08:55:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,422
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,629
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder Large duplicate set. size = 1420
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,996
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,638
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder Large duplicate set. size = 2251
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,093
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,076
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder Large duplicate set. size = 1640
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,875
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder Large duplicate set. size = 1233
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,060
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder Large duplicate set. size = 1710
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,115
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 08:56:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,313
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,048
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,669
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,318
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1268
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,829
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,880
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 2198
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,715
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,195
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,708
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1236
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,090
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,777
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1223
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,755
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1274
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,761
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder Large duplicate set. size = 1329
INFO 2026-06-08 08:56:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,096
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1466
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,301
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,363
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1428
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,976
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1520
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,225
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1216
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,191
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1207
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,223
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,983
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,982
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,656
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1879
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,078
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,514
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 2144
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,243
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,533
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,108
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,153
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,790
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,365
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,901
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 08:56:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,292
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,493
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,031
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1392
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,742
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,307
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1410
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,467
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,719
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,218
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1430
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,787
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,282
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,874
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1776
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,948
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,899
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,098
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,078
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1193
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,828
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1236
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,436
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,657
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,322
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,086
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 08:56:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,952
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 2293
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,525
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,916
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,039
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1524
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,109
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1494
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,419
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,480
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1443
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,885
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1346
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,385
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1511
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,903
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1579
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,230
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1483
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,095
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1236
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,475
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,003
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,052
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,755
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1246
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,585
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,202
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1386
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,874
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1438
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,739
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,495
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 2562
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,598
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,610
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 08:56:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,204
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,997
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,024
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1227
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,204
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,032
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,201
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1717
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,926
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1491
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,216
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1787
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,368
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1434
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,700
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1871
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,040
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 2620
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,089
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,134
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 2238
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,176
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,210
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1789
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,375
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 2226
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,335
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,212
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1295
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,138
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,099
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,603
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1217
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,330
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,525
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1892
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,779
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 3595
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,149
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,183
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,791
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1284
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,836
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,986
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1716
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,242
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 2581
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,221
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,679
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 2319
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,136
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,415
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1750
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,161
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1273
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,383
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,867
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1308
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,216
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 2518
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,409
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,405
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,947
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,390
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1478
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,760
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1639
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,291
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,629
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 2384
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,034
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,760
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,406
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,268
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1343
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,765
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,220
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 2194
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,420
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,581
INFO 2026-06-08 08:56:48 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,100
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,018
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,004
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,237
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder Large duplicate set. size = 1950
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,731
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,028
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,125
INFO 2026-06-08 08:57:02 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:57:02 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:58:00 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:58:06 MarkDuplicates After generateDuplicateIndexes freeMemory: 203873912; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:58:06 MarkDuplicates Marking 359481424 records as duplicates.
INFO 2026-06-08 08:58:06 MarkDuplicates Found 8997781 optical duplicate clusters.
INFO 2026-06-08 08:58:06 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:58:21 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:34,988,707
INFO 2026-06-08 08:58:37 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:114,733,745
INFO 2026-06-08 08:58:52 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:152,032,778
INFO 2026-06-08 08:59:07 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:01s. Time for last 10,000,000: 15s. Last read position: chr1:161,542,920
INFO 2026-06-08 08:59:23 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:16s. Time for last 10,000,000: 15s. Last read position: chr1:208,031,611
INFO 2026-06-08 08:59:38 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:32s. Time for last 10,000,000: 15s. Last read position: chr2:24,918,634
INFO 2026-06-08 08:59:54 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:48s. Time for last 10,000,000: 15s. Last read position: chr2:74,135,493
INFO 2026-06-08 09:00:09 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 15s. Last read position: chr2:151,639,984
INFO 2026-06-08 09:00:25 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 15s. Last read position: chr2:178,773,114
INFO 2026-06-08 09:00:40 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:34s. Time for last 10,000,000: 15s. Last read position: chr2:215,375,365
INFO 2026-06-08 09:00:56 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:50s. Time for last 10,000,000: 15s. Last read position: chr2:217,900,482
INFO 2026-06-08 09:01:12 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:06s. Time for last 10,000,000: 15s. Last read position: chr3:41,224,019
INFO 2026-06-08 09:01:27 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:21s. Time for last 10,000,000: 15s. Last read position: chr3:112,563,401
INFO 2026-06-08 09:01:43 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:37s. Time for last 10,000,000: 15s. Last read position: chr3:184,331,561
INFO 2026-06-08 09:01:58 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 15s. Last read position: chr4:86,935,205
INFO 2026-06-08 09:02:14 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 15s. Last read position: chr5:35,065,459
INFO 2026-06-08 09:02:30 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 15s. Last read position: chr5:128,134,265
INFO 2026-06-08 09:02:45 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 15s. Last read position: chr5:150,405,124
INFO 2026-06-08 09:03:00 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 15s. Last read position: chr6:17,828,351
INFO 2026-06-08 09:03:15 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 15s. Last read position: chr6:33,304,446
INFO 2026-06-08 09:03:31 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:25s. Time for last 10,000,000: 16s. Last read position: chr6:143,765,512
INFO 2026-06-08 09:03:47 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 15s. Last read position: chr7:44,040,352
INFO 2026-06-08 09:04:02 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 15s. Last read position: chr7:98,221,712
INFO 2026-06-08 09:04:18 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 15s. Last read position: chr7:151,480,343
INFO 2026-06-08 09:04:33 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:27s. Time for last 10,000,000: 15s. Last read position: chr8:96,494,267
INFO 2026-06-08 09:04:48 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:42s. Time for last 10,000,000: 15s. Last read position: chr8:143,938,045
INFO 2026-06-08 09:05:04 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:58s. Time for last 10,000,000: 15s. Last read position: chr9:114,597,621
INFO 2026-06-08 09:05:19 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:13s. Time for last 10,000,000: 15s. Last read position: chr10:14,521,899
INFO 2026-06-08 09:05:35 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 15s. Last read position: chr10:93,323,150
INFO 2026-06-08 09:05:50 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:44s. Time for last 10,000,000: 15s. Last read position: chr11:8,715,763
INFO 2026-06-08 09:06:06 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 15s. Last read position: chr11:62,528,839
INFO 2026-06-08 09:06:21 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 15s. Last read position: chr11:75,404,679
INFO 2026-06-08 09:06:37 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:31s. Time for last 10,000,000: 16s. Last read position: chr12:6,075,456
INFO 2026-06-08 09:06:53 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 15s. Last read position: chr12:40,570,537
INFO 2026-06-08 09:07:08 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:02s. Time for last 10,000,000: 15s. Last read position: chr12:57,175,952
INFO 2026-06-08 09:07:24 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:18s. Time for last 10,000,000: 15s. Last read position: chr12:120,158,486
INFO 2026-06-08 09:07:39 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:33s. Time for last 10,000,000: 15s. Last read position: chr13:113,233,967
INFO 2026-06-08 09:07:55 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:49s. Time for last 10,000,000: 15s. Last read position: chr14:73,292,779
INFO 2026-06-08 09:08:10 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:04s. Time for last 10,000,000: 15s. Last read position: chr15:39,581,868
INFO 2026-06-08 09:08:25 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 15s. Last read position: chr15:85,579,017
INFO 2026-06-08 09:08:41 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:34s. Time for last 10,000,000: 15s. Last read position: chr16:11,929,045
INFO 2026-06-08 09:08:56 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:50s. Time for last 10,000,000: 15s. Last read position: chr16:22,536,229
INFO 2026-06-08 09:09:11 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 15s. Last read position: chr16:64,998,458
INFO 2026-06-08 09:09:26 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:20s. Time for last 10,000,000: 15s. Last read position: chr17:10,512,719
INFO 2026-06-08 09:09:42 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:35s. Time for last 10,000,000: 15s. Last read position: chr17:39,724,752
INFO 2026-06-08 09:09:57 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:51s. Time for last 10,000,000: 15s. Last read position: chr17:50,185,916
INFO 2026-06-08 09:10:12 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 14s. Last read position: chr17:50,191,844
INFO 2026-06-08 09:10:27 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:21s. Time for last 10,000,000: 15s. Last read position: chr17:50,198,181
INFO 2026-06-08 09:10:42 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:36s. Time for last 10,000,000: 15s. Last read position: chr17:75,130,482
INFO 2026-06-08 09:10:57 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:51s. Time for last 10,000,000: 15s. Last read position: chr18:49,489,425
INFO 2026-06-08 09:11:12 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:06s. Time for last 10,000,000: 15s. Last read position: chr19:13,804,912
INFO 2026-06-08 09:11:27 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:21s. Time for last 10,000,000: 14s. Last read position: chr19:40,422,770
INFO 2026-06-08 09:11:42 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 15s. Last read position: chr19:54,454,622
INFO 2026-06-08 09:11:58 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 15s. Last read position: chr20:38,574,288
INFO 2026-06-08 09:12:13 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:07s. Time for last 10,000,000: 14s. Last read position: chr21:31,692,297
INFO 2026-06-08 09:12:28 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:22s. Time for last 10,000,000: 15s. Last read position: chr22:30,617,454
INFO 2026-06-08 09:12:43 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:37s. Time for last 10,000,000: 15s. Last read position: chrX:17,077,316
INFO 2026-06-08 09:12:59 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 15s. Last read position: chrX:132,214,137
INFO 2026-06-08 09:13:17 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:11s. Time for last 10,000,000: 17s. Last read position: */*
INFO 2026-06-08 09:13:17 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:13:17 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:13:17 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:13:17 MarkDuplicates Before output close freeMemory: 203818040; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:13:17 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:13:17 MarkDuplicates After output close freeMemory: 104073264; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:13:17 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 37.63 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory