[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	190273381
Known Splicing Events:	188484754
Partial Novel Splicing Events:	1048930
Novel Splicing Events:	643385
Filtered Splicing Events:	96312

Total splicing  Junctions:	287353
Known Splicing Junctions:	206724
Partial Novel Splicing Junctions:	46023
Novel Splicing Junctions:	34606

===================================================================
Create BED file ...
Create Interact file ...