[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	149708948
Known Splicing Events:	148259335
Partial Novel Splicing Events:	864634
Novel Splicing Events:	507875
Filtered Splicing Events:	77104

Total splicing  Junctions:	246962
Known Splicing Junctions:	191017
Partial Novel Splicing Junctions:	32547
Novel Splicing Junctions:	23398

===================================================================
Create BED file ...
Create Interact file ...