File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/8fffb1f2320daa4ad19f260fd19198/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/2abf8629e46df45072d2bc27d2c722/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/45904938647225fa3c48f5dcd2aa95/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/8fffb1f2320daa4ad19f260fd19198/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/8fffb1f2320daa4ad19f260fd19198/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 149708948
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	149708948
Known Splicing Events:	148259335
Partial Novel Splicing Events:	864634
Novel Splicing Events:	507875
Filtered Splicing Events:	77104

Total splicing  Junctions:	246962
Known Splicing Junctions:	191017
Partial Novel Splicing Junctions:	32547
Novel Splicing Junctions:	23398

===================================================================
Create BED file ...
Create Interact file ...