Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/a0e4b2607beeb6062e94dc405449d3/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/a0e4b2607beeb6062e94dc405449d3/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/9c6e9cc7b4449da6cb0e51f40dd655/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.md.bam --METRICS_FILE BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:28:38.010 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:28:38 GMT 2026] MarkDuplicates --INPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.md.bam --METRICS_FILE BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:28:38 GMT 2026] Executing as ?@nf-06a0e4b2607beeb6062e94dc405449d3-d3918-8wzrb on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:28:38 MarkDuplicates Start of doWork freeMemory: 105494536; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:28:38 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:28:38 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:28:42 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,051,789
INFO 2026-06-08 08:28:42 MarkDuplicates Tracking 3256 as yet unmatched pairs. 556 records in RAM.
INFO 2026-06-08 08:28:44 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,739,419
INFO 2026-06-08 08:28:44 MarkDuplicates Tracking 5527 as yet unmatched pairs. 180 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,192,948
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 9389 as yet unmatched pairs. 1401 records in RAM.
INFO 2026-06-08 08:28:48 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:8,865,285
INFO 2026-06-08 08:28:48 MarkDuplicates Tracking 11363 as yet unmatched pairs. 889 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,793,962
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 13079 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:15,719,820
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 15386 as yet unmatched pairs. 220 records in RAM.
INFO 2026-06-08 08:28:54 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:17,267,957
INFO 2026-06-08 08:28:54 MarkDuplicates Tracking 18599 as yet unmatched pairs. 1245 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:19,201,773
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 20316 as yet unmatched pairs. 502 records in RAM.
INFO 2026-06-08 08:28:57 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,701,544
INFO 2026-06-08 08:28:57 MarkDuplicates Tracking 22132 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:23,092,725
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 24458 as yet unmatched pairs. 68 records in RAM.
INFO 2026-06-08 08:29:01 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:25,485,780
INFO 2026-06-08 08:29:01 MarkDuplicates Tracking 26597 as yet unmatched pairs. 78 records in RAM.
INFO 2026-06-08 08:29:04 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:26,780,673
INFO 2026-06-08 08:29:04 MarkDuplicates Tracking 29299 as yet unmatched pairs. 372 records in RAM.
INFO 2026-06-08 08:29:06 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:28,535,043
INFO 2026-06-08 08:29:06 MarkDuplicates Tracking 31421 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:31,434,322
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 33701 as yet unmatched pairs. 40 records in RAM.
INFO 2026-06-08 08:29:09 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:32,334,718
INFO 2026-06-08 08:29:09 MarkDuplicates Tracking 36358 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:35,184,467
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 38495 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:37,987,787
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 40960 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:40,303,932
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 43182 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:43,171,542
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 45775 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:43,617,445
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 48991 as yet unmatched pairs. 745 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:45,514,874
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 51004 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:46,811,167
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 54152 as yet unmatched pairs. 1049 records in RAM.
INFO 2026-06-08 08:29:23 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:52,475,169
INFO 2026-06-08 08:29:23 MarkDuplicates Tracking 55614 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 08:29:26 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:58,576,788
INFO 2026-06-08 08:29:26 MarkDuplicates Tracking 58522 as yet unmatched pairs. 648 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:68,479,169
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 60292 as yet unmatched pairs. 43 records in RAM.
INFO 2026-06-08 08:29:29 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:86,863,457
INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 63968 as yet unmatched pairs. 1557 records in RAM.
INFO 2026-06-08 08:29:31 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:94,489,918
INFO 2026-06-08 08:29:31 MarkDuplicates Tracking 65055 as yet unmatched pairs. 474 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:109,250,651
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 66287 as yet unmatched pairs. 61 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:109,737,009
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 70964 as yet unmatched pairs. 2485 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:112,701,629
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 70914 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:29:37 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:116,384,814
INFO 2026-06-08 08:29:37 MarkDuplicates Tracking 73258 as yet unmatched pairs. 438 records in RAM.
INFO 2026-06-08 08:29:39 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,918
INFO 2026-06-08 08:29:39 MarkDuplicates Tracking 75328 as yet unmatched pairs. 293 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:144,436,988
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 76933 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-08 08:29:41 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:146,966,466
INFO 2026-06-08 08:29:41 MarkDuplicates Tracking 78052 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:148,953,091
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 79179 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,944,046
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 80396 as yet unmatched pairs. 78 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:151,262,182
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 82969 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:153,534,792
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 87843 as yet unmatched pairs. 3030 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,673
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 87946 as yet unmatched pairs. 1083 records in RAM.
INFO 2026-06-08 08:29:49 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:155,051,374
INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 89173 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:155,688,165
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 91578 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,139
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 95290 as yet unmatched pairs. 1118 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:159,018,343
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 96960 as yet unmatched pairs. 352 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:161,089,238
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 99129 as yet unmatched pairs. 287 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:169,125,026
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 101503 as yet unmatched pairs. 448 records in RAM.
INFO 2026-06-08 08:29:59 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:176,162,880
INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 103664 as yet unmatched pairs. 502 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:182,884,708
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 105602 as yet unmatched pairs. 258 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:186,362,835
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 108001 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:201,389,160
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 109971 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:203,305,707
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 112264 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:205,620,478
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 114550 as yet unmatched pairs. 363 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:209,627,538
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 116817 as yet unmatched pairs. 313 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:220,618,277
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 118995 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:226,065,724
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 123062 as yet unmatched pairs. 2085 records in RAM.
INFO 2026-06-08 08:30:13 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:229,542,277
INFO 2026-06-08 08:30:13 MarkDuplicates Tracking 123610 as yet unmatched pairs. 43 records in RAM.
INFO 2026-06-08 08:30:15 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:236,537,512
INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 126251 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr2:231,178
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 128359 as yet unmatched pairs. 128107 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:11,804,476
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 130290 as yet unmatched pairs. 130037 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:20,203,842
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 136855 as yet unmatched pairs. 136602 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:20,258,277
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 135454 as yet unmatched pairs. 135200 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:26,764,309
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 137289 as yet unmatched pairs. 137019 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:28,776,861
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 142197 as yet unmatched pairs. 141926 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,253
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 148043 as yet unmatched pairs. 141195 records in RAM.
INFO 2026-06-08 08:30:30 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:30:30 MarkDuplicates Tracking 527059 as yet unmatched pairs. 109077 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,405
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 1046545 as yet unmatched pairs. 65143 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 1051616 as yet unmatched pairs. 64702 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:38,847,016
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 1107641 as yet unmatched pairs. 58596 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:43,574,776
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 1105595 as yet unmatched pairs. 56550 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:54,626,145
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 1103394 as yet unmatched pairs. 54342 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:61,071,777
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 1100692 as yet unmatched pairs. 51639 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:69,326,912
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 1098773 as yet unmatched pairs. 49719 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:73,862,203
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 1096471 as yet unmatched pairs. 47416 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:85,327,552
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 1094645 as yet unmatched pairs. 45585 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:95,087,562
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 1092386 as yet unmatched pairs. 43326 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:96,610,820
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 1090274 as yet unmatched pairs. 41213 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:101,005,972
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 1094355 as yet unmatched pairs. 45290 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:108,754,937
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 1086692 as yet unmatched pairs. 37627 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:110,533,953
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 1084587 as yet unmatched pairs. 35521 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:112,659,347
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 1083430 as yet unmatched pairs. 34350 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:113,437,877
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 1081087 as yet unmatched pairs. 32007 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:130,341,688
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 1079121 as yet unmatched pairs. 30041 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:151,463,487
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 1076909 as yet unmatched pairs. 27828 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:164,694,719
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 1075389 as yet unmatched pairs. 26299 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:174,719,884
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 1073014 as yet unmatched pairs. 23924 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:182,930,759
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 1071631 as yet unmatched pairs. 22541 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:196,775,156
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 1068764 as yet unmatched pairs. 19674 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:202,555,749
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 1066800 as yet unmatched pairs. 17696 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:210,171,305
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 1064456 as yet unmatched pairs. 15350 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:217,885,773
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 1062219 as yet unmatched pairs. 13109 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:219,232,589
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 1059973 as yet unmatched pairs. 10838 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:229,777,377
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 1057782 as yet unmatched pairs. 8632 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:232,249,267
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 1055513 as yet unmatched pairs. 6362 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:233,767,128
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 1054120 as yet unmatched pairs. 4954 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:240,560,907
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 1051008 as yet unmatched pairs. 1839 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr3:4,983,206
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 1049052 as yet unmatched pairs. 63763 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr3:11,601,892
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 1046651 as yet unmatched pairs. 61358 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr3:14,445,811
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 1044213 as yet unmatched pairs. 58920 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:25,664,300
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 1041933 as yet unmatched pairs. 56638 records in RAM.
INFO 2026-06-08 08:31:24 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr3:37,975,873
INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 1039858 as yet unmatched pairs. 54562 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:40,461,463
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 1038829 as yet unmatched pairs. 53519 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr3:42,908,889
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 1035432 as yet unmatched pairs. 50120 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr3:47,057,378
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 1033098 as yet unmatched pairs. 47784 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:48,416,143
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 1030897 as yet unmatched pairs. 45573 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:48,694,905
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 1028917 as yet unmatched pairs. 43591 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:49,278,300
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 1025675 as yet unmatched pairs. 40347 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:49,896,295
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 1023408 as yet unmatched pairs. 38071 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:51,937,705
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 1020622 as yet unmatched pairs. 35285 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:52,540,424
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 1018484 as yet unmatched pairs. 33139 records in RAM.
INFO 2026-06-08 08:31:40 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:57,557,656
INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 1016418 as yet unmatched pairs. 31073 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:64,019,305
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 1014284 as yet unmatched pairs. 28939 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:100,386,935
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 1012047 as yet unmatched pairs. 26693 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:113,655,503
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 1010115 as yet unmatched pairs. 24756 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:122,718,671
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 1008077 as yet unmatched pairs. 22709 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:127,017,757
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 1005589 as yet unmatched pairs. 20214 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr3:130,708,292
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 1003016 as yet unmatched pairs. 17640 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:141,443,014
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 1000984 as yet unmatched pairs. 15606 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:150,572,075
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 998747 as yet unmatched pairs. 13366 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:161,429,425
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 996862 as yet unmatched pairs. 11474 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:179,367,441
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 994884 as yet unmatched pairs. 9487 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:184,302,712
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 992600 as yet unmatched pairs. 7201 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:187,722,394
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 990226 as yet unmatched pairs. 4827 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:194,665,572
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 988154 as yet unmatched pairs. 2749 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:196,801,997
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 986355 as yet unmatched pairs. 922 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr4:1,236,658
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 984646 as yet unmatched pairs. 44479 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr4:1,799,275
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 987105 as yet unmatched pairs. 46936 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr4:1,804,331
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 985180 as yet unmatched pairs. 45011 records in RAM.
INFO 2026-06-08 08:32:09 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr4:1,806,268
INFO 2026-06-08 08:32:09 MarkDuplicates Tracking 985000 as yet unmatched pairs. 44831 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr4:2,822,935
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 972926 as yet unmatched pairs. 32756 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr4:6,694,029
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 974239 as yet unmatched pairs. 34069 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr4:15,638,545
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 968241 as yet unmatched pairs. 28071 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr4:39,456,452
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 968393 as yet unmatched pairs. 28221 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr4:48,851,900
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 964210 as yet unmatched pairs. 24036 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr4:68,330,096
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 961636 as yet unmatched pairs. 21461 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr4:77,164,302
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 959912 as yet unmatched pairs. 19734 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr4:86,453,086
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 957988 as yet unmatched pairs. 17792 records in RAM.
INFO 2026-06-08 08:32:22 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr4:94,640,275
INFO 2026-06-08 08:32:22 MarkDuplicates Tracking 954894 as yet unmatched pairs. 14695 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr4:109,533,607
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 952938 as yet unmatched pairs. 12737 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:139,044,703
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 950866 as yet unmatched pairs. 10662 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:150,831,873
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 948794 as yet unmatched pairs. 8590 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:164,284,881
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 946622 as yet unmatched pairs. 6417 records in RAM.
INFO 2026-06-08 08:32:31 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr4:174,491,316
INFO 2026-06-08 08:32:31 MarkDuplicates Tracking 955975 as yet unmatched pairs. 15764 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr4:185,147,016
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 942089 as yet unmatched pairs. 1866 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr5:256,553
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 940009 as yet unmatched pairs. 52301 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr5:14,290,870
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 938079 as yet unmatched pairs. 50365 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr5:32,585,606
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 935780 as yet unmatched pairs. 48058 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr5:43,161,650
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 933371 as yet unmatched pairs. 45645 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr5:64,807,715
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 931087 as yet unmatched pairs. 43361 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr5:71,510,929
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 929331 as yet unmatched pairs. 41605 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr5:78,034,363
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 927308 as yet unmatched pairs. 39579 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr5:87,269,166
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 925222 as yet unmatched pairs. 37493 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:103,187,270
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 922990 as yet unmatched pairs. 35255 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr5:123,028,853
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 920807 as yet unmatched pairs. 33066 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:132,893,082
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 918225 as yet unmatched pairs. 30483 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr5:138,168,591
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 915972 as yet unmatched pairs. 28230 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:140,175,251
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 913954 as yet unmatched pairs. 26201 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr5:141,573,787
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 911757 as yet unmatched pairs. 23977 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:146,177,656
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 909347 as yet unmatched pairs. 21559 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:150,012,264
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 907250 as yet unmatched pairs. 19462 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,903
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 908159 as yet unmatched pairs. 20371 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:151,568,243
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 902520 as yet unmatched pairs. 14731 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr5:166,382,527
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 900216 as yet unmatched pairs. 12425 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:172,064,660
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 898341 as yet unmatched pairs. 10549 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:177,338,487
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 896169 as yet unmatched pairs. 8376 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr5:179,771,118
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 893977 as yet unmatched pairs. 6180 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,666
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 893191 as yet unmatched pairs. 5393 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:181,236,969
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 891791 as yet unmatched pairs. 3993 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr6:4,115,880
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 886551 as yet unmatched pairs. 58306 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr6:12,161,649
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 884444 as yet unmatched pairs. 56199 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr6:26,027,007
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 882715 as yet unmatched pairs. 54453 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr6:27,831,233
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 881043 as yet unmatched pairs. 52778 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr6:30,555,569
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 877795 as yet unmatched pairs. 49524 records in RAM.
INFO 2026-06-08 08:33:20 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr6:31,270,259
INFO 2026-06-08 08:33:20 MarkDuplicates Tracking 875806 as yet unmatched pairs. 47532 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr6:31,667,894
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 873141 as yet unmatched pairs. 44865 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,865,902
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 871544 as yet unmatched pairs. 43268 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr6:32,950,768
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 868926 as yet unmatched pairs. 40643 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr6:33,414,477
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 866833 as yet unmatched pairs. 38549 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr6:35,470,195
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 864981 as yet unmatched pairs. 36692 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr6:41,092,966
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 861748 as yet unmatched pairs. 33450 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr6:43,186,096
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 859304 as yet unmatched pairs. 31005 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr6:44,247,143
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 857298 as yet unmatched pairs. 28990 records in RAM.
INFO 2026-06-08 08:33:33 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr6:47,286,566
INFO 2026-06-08 08:33:33 MarkDuplicates Tracking 855484 as yet unmatched pairs. 27171 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr6:56,615,698
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 852932 as yet unmatched pairs. 24615 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:75,259,382
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 850869 as yet unmatched pairs. 22548 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr6:87,233,359
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 848344 as yet unmatched pairs. 20022 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr6:105,282,570
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 846011 as yet unmatched pairs. 17689 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:111,307,478
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 843787 as yet unmatched pairs. 15460 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:128,005,092
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 841569 as yet unmatched pairs. 13242 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:138,162,147
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 839739 as yet unmatched pairs. 11406 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:145,805,288
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 836966 as yet unmatched pairs. 8625 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:157,148,694
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 834823 as yet unmatched pairs. 6471 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:158,785,352
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 834337 as yet unmatched pairs. 5985 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:163,563,466
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 830859 as yet unmatched pairs. 2505 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr7:893,694
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 827969 as yet unmatched pairs. 56669 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr7:5,299,265
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 825096 as yet unmatched pairs. 53796 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,481
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 825938 as yet unmatched pairs. 54637 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr7:6,588,770
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 820497 as yet unmatched pairs. 49195 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr7:22,493,893
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 818298 as yet unmatched pairs. 46996 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr7:30,599,980
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 816132 as yet unmatched pairs. 44829 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr7:44,485,036
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 813914 as yet unmatched pairs. 42608 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr7:55,157,699
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 811608 as yet unmatched pairs. 40301 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr7:67,280,791
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 809298 as yet unmatched pairs. 37990 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr7:73,682,721
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 808453 as yet unmatched pairs. 37145 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr7:75,186,486
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 807232 as yet unmatched pairs. 35924 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr7:76,060,480
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 805344 as yet unmatched pairs. 34035 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr7:76,510,693
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 803751 as yet unmatched pairs. 32439 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr7:80,661,209
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 800610 as yet unmatched pairs. 29297 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr7:92,489,855
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 798691 as yet unmatched pairs. 27374 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr7:99,325,948
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 796621 as yet unmatched pairs. 25304 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,353,761
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 794383 as yet unmatched pairs. 23066 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,955,425
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 792668 as yet unmatched pairs. 21351 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr7:102,355,836
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 789817 as yet unmatched pairs. 18498 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr7:105,063,565
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 788621 as yet unmatched pairs. 17300 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr7:116,731,771
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 787307 as yet unmatched pairs. 15982 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr7:128,084,782
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 784946 as yet unmatched pairs. 13620 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr7:134,941,186
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 782309 as yet unmatched pairs. 10982 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr7:140,459,779
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 780255 as yet unmatched pairs. 8928 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr7:143,399,748
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 777623 as yet unmatched pairs. 6296 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr7:149,020,959
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 776482 as yet unmatched pairs. 5154 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr7:151,239,117
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 773582 as yet unmatched pairs. 2254 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr8:458,235
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 771345 as yet unmatched pairs. 64833 records in RAM.
INFO 2026-06-08 08:34:35 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr8:13,099,870
INFO 2026-06-08 08:34:35 MarkDuplicates Tracking 769029 as yet unmatched pairs. 62503 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr8:22,101,743
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 766924 as yet unmatched pairs. 60395 records in RAM.
INFO 2026-06-08 08:34:38 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr8:24,343,573
INFO 2026-06-08 08:34:38 MarkDuplicates Tracking 764423 as yet unmatched pairs. 57890 records in RAM.
INFO 2026-06-08 08:34:40 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr8:30,547,280
INFO 2026-06-08 08:34:40 MarkDuplicates Tracking 763119 as yet unmatched pairs. 56583 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr8:38,331,557
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 761145 as yet unmatched pairs. 54609 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr8:42,185,085
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 758129 as yet unmatched pairs. 51592 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr8:47,902,613
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 755467 as yet unmatched pairs. 48928 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr8:56,073,768
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 755471 as yet unmatched pairs. 48932 records in RAM.
INFO 2026-06-08 08:34:48 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr8:66,665,250
INFO 2026-06-08 08:34:48 MarkDuplicates Tracking 750644 as yet unmatched pairs. 44095 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr8:73,291,638
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 750878 as yet unmatched pairs. 44327 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr8:89,935,528
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 747102 as yet unmatched pairs. 40546 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr8:98,041,809
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 750401 as yet unmatched pairs. 43845 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr8:100,705,618
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 745413 as yet unmatched pairs. 38857 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr8:100,718,207
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 747298 as yet unmatched pairs. 40742 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr8:103,063,171
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 737662 as yet unmatched pairs. 31105 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr8:119,221,667
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 738087 as yet unmatched pairs. 31515 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,794
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 733556 as yet unmatched pairs. 26982 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr8:133,264,616
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 736037 as yet unmatched pairs. 29456 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr8:142,681,423
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 730616 as yet unmatched pairs. 24033 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr8:143,649,938
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 725773 as yet unmatched pairs. 19184 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,195
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 723276 as yet unmatched pairs. 16687 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 0s. Last read position: chr8:143,859,798
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 722263 as yet unmatched pairs. 15674 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,344
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 722589 as yet unmatched pairs. 16000 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,670
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 722699 as yet unmatched pairs. 16109 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,008
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 719589 as yet unmatched pairs. 12999 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,694
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 718768 as yet unmatched pairs. 12178 records in RAM.
INFO 2026-06-08 08:35:14 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,869,675
INFO 2026-06-08 08:35:14 MarkDuplicates Tracking 718452 as yet unmatched pairs. 11862 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,920,613
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 715805 as yet unmatched pairs. 9214 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,984,690
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 712318 as yet unmatched pairs. 5726 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr8:144,394,798
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 709540 as yet unmatched pairs. 2947 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr9:16,981
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 706591 as yet unmatched pairs. 27384 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,147
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 704704 as yet unmatched pairs. 25491 records in RAM.
INFO 2026-06-08 08:35:24 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr9:32,566,434
INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 702660 as yet unmatched pairs. 23445 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 63s. Last read position: chr9:35,105,202
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 700069 as yet unmatched pairs. 20852 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr9:69,221,160
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 698021 as yet unmatched pairs. 18800 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr9:87,706,306
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 695894 as yet unmatched pairs. 16671 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr9:99,035,041
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 693520 as yet unmatched pairs. 14291 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr9:113,194,040
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 691409 as yet unmatched pairs. 12178 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr9:125,239,173
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 689126 as yet unmatched pairs. 9887 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr9:128,693,636
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 686850 as yet unmatched pairs. 7610 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr9:132,662,261
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 684453 as yet unmatched pairs. 5210 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr9:136,474,923
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 682496 as yet unmatched pairs. 3252 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr9:137,586,966
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 679503 as yet unmatched pairs. 257 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr10:4,972,214
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 682826 as yet unmatched pairs. 39375 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr10:5,102,564
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 677313 as yet unmatched pairs. 33862 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr10:8,073,759
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 674107 as yet unmatched pairs. 30656 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr10:24,473,426
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 671547 as yet unmatched pairs. 28096 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr10:32,017,266
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 670704 as yet unmatched pairs. 27251 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr10:35,010,336
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 667868 as yet unmatched pairs. 24415 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr10:43,386,986
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 665816 as yet unmatched pairs. 22361 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr10:46,016,614
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 663594 as yet unmatched pairs. 20139 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr10:59,906,214
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 661975 as yet unmatched pairs. 18519 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr10:71,645,887
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 659700 as yet unmatched pairs. 16244 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr10:75,220,795
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 657820 as yet unmatched pairs. 14363 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr10:84,560,797
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 655603 as yet unmatched pairs. 12146 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr10:91,845,765
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 653535 as yet unmatched pairs. 10077 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr10:97,430,572
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 651633 as yet unmatched pairs. 8175 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr10:102,656,324
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 648980 as yet unmatched pairs. 5520 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr10:119,042,117
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 646857 as yet unmatched pairs. 3395 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr10:129,759,210
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 644915 as yet unmatched pairs. 1443 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr11:499,857
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 642205 as yet unmatched pairs. 82054 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr11:840,307
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 639545 as yet unmatched pairs. 79394 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr11:1,759,599
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 640826 as yet unmatched pairs. 80674 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr11:2,570,669
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 634432 as yet unmatched pairs. 74280 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr11:7,593,170
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 631625 as yet unmatched pairs. 71473 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr11:9,575,891
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 629235 as yet unmatched pairs. 69077 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr11:11,964,663
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 626704 as yet unmatched pairs. 66543 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr11:18,396,858
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 627977 as yet unmatched pairs. 67814 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr11:33,747,183
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 622671 as yet unmatched pairs. 62507 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr11:45,805,925
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 620460 as yet unmatched pairs. 60294 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr11:47,573,048
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 618045 as yet unmatched pairs. 57879 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr11:57,803,734
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 616395 as yet unmatched pairs. 56227 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr11:60,898,907
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 613714 as yet unmatched pairs. 53546 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr11:61,965,099
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 618877 as yet unmatched pairs. 58702 records in RAM.
INFO 2026-06-08 08:37:32 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,623
INFO 2026-06-08 08:37:32 MarkDuplicates Tracking 609604 as yet unmatched pairs. 49425 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr11:62,572,622
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 607200 as yet unmatched pairs. 47021 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr11:63,899,927
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 605050 as yet unmatched pairs. 44871 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr11:64,765,927
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 602284 as yet unmatched pairs. 42104 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr11:65,186,208
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 600200 as yet unmatched pairs. 40007 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,366
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 597386 as yet unmatched pairs. 37188 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr11:66,337,717
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 594555 as yet unmatched pairs. 34357 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr11:67,395,960
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 591714 as yet unmatched pairs. 31515 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr11:68,347,880
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 589197 as yet unmatched pairs. 28998 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,203
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 588451 as yet unmatched pairs. 28251 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr11:71,538,390
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 584282 as yet unmatched pairs. 24078 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr11:73,716,331
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 582271 as yet unmatched pairs. 22067 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr11:77,120,851
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 579810 as yet unmatched pairs. 19606 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr11:88,296,206
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 578269 as yet unmatched pairs. 18064 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr11:102,350,215
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 575858 as yet unmatched pairs. 15651 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr11:116,858,600
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 573346 as yet unmatched pairs. 13138 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr11:118,503,983
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 571074 as yet unmatched pairs. 10866 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr11:119,373,304
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 568765 as yet unmatched pairs. 8556 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr11:121,570,217
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 566575 as yet unmatched pairs. 6366 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr11:124,752,133
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 564019 as yet unmatched pairs. 3810 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr11:129,876,799
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 561876 as yet unmatched pairs. 1666 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr12:886,040
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 559639 as yet unmatched pairs. 67424 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr12:6,333,424
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 557640 as yet unmatched pairs. 65425 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr12:6,652,337
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 555066 as yet unmatched pairs. 62851 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr12:7,481,101
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 552428 as yet unmatched pairs. 60212 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr12:12,787,141
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 550366 as yet unmatched pairs. 58150 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr12:21,637,091
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 549535 as yet unmatched pairs. 57319 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr12:32,701,540
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 546070 as yet unmatched pairs. 53853 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr12:46,370,537
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 544777 as yet unmatched pairs. 52554 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr12:49,032,103
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 541875 as yet unmatched pairs. 49643 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr12:49,272,948
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 540384 as yet unmatched pairs. 48152 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr12:51,240,869
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 538229 as yet unmatched pairs. 45997 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr12:52,897,608
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 535210 as yet unmatched pairs. 42977 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr12:53,309,228
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 532458 as yet unmatched pairs. 40218 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,824
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 531878 as yet unmatched pairs. 39638 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr12:55,980,966
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 528321 as yet unmatched pairs. 36080 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr12:56,165,284
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 526035 as yet unmatched pairs. 33794 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr12:56,712,465
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 525335 as yet unmatched pairs. 33093 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr12:57,105,284
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 522203 as yet unmatched pairs. 29961 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr12:57,608,546
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 519332 as yet unmatched pairs. 27090 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr12:67,306,377
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 517400 as yet unmatched pairs. 25156 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,786
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 515539 as yet unmatched pairs. 23293 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr12:93,641,310
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 512890 as yet unmatched pairs. 20644 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr12:103,946,659
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 511283 as yet unmatched pairs. 19036 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr12:109,858,695
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 508880 as yet unmatched pairs. 16633 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr12:112,319,596
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 506258 as yet unmatched pairs. 14011 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr12:113,844,759
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 504021 as yet unmatched pairs. 11774 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr12:120,149,619
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 501915 as yet unmatched pairs. 9660 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr12:120,563,927
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 500001 as yet unmatched pairs. 7746 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr12:122,981,854
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 497343 as yet unmatched pairs. 5088 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr12:130,874,584
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 495432 as yet unmatched pairs. 3177 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr13:18,298,516
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 492256 as yet unmatched pairs. 18983 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr13:21,421,028
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 491155 as yet unmatched pairs. 17882 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr13:30,653,159
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 488288 as yet unmatched pairs. 15015 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr13:41,193,823
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 486039 as yet unmatched pairs. 12765 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,712
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 489083 as yet unmatched pairs. 15808 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr13:51,376,054
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 481525 as yet unmatched pairs. 8248 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr13:79,481,511
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 479526 as yet unmatched pairs. 6247 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr13:98,897,538
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 477105 as yet unmatched pairs. 3822 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr13:111,153,935
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 474855 as yet unmatched pairs. 1572 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr14:21,020,794
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 473525 as yet unmatched pairs. 37644 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr14:22,876,710
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 470546 as yet unmatched pairs. 34665 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr14:23,639,820
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 470833 as yet unmatched pairs. 34952 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr14:24,304,125
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 465422 as yet unmatched pairs. 29541 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr14:34,567,685
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 462911 as yet unmatched pairs. 27003 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr14:49,621,411
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 460793 as yet unmatched pairs. 24883 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr14:55,350,531
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 458567 as yet unmatched pairs. 22656 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr14:61,740,527
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 457043 as yet unmatched pairs. 21132 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr14:65,077,881
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 454086 as yet unmatched pairs. 18162 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr14:70,978,134
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 451978 as yet unmatched pairs. 16054 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr14:75,039,949
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 449772 as yet unmatched pairs. 13846 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr14:81,277,275
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 447395 as yet unmatched pairs. 11467 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr14:93,242,407
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 445087 as yet unmatched pairs. 9155 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr14:102,001,653
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 442682 as yet unmatched pairs. 6745 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr14:103,127,343
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 440389 as yet unmatched pairs. 4452 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr14:104,756,635
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 438080 as yet unmatched pairs. 2143 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr15:22,874,616
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 435867 as yet unmatched pairs. 54854 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr15:30,362,547
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 433610 as yet unmatched pairs. 52596 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr15:34,532,861
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 432017 as yet unmatched pairs. 51003 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr15:40,813,358
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 429570 as yet unmatched pairs. 48556 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr15:41,766,646
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 427681 as yet unmatched pairs. 46667 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr15:43,364,255
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 424827 as yet unmatched pairs. 43812 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,754
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 428104 as yet unmatched pairs. 47089 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr15:45,120,171
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 420862 as yet unmatched pairs. 39847 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr15:51,514,443
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 418558 as yet unmatched pairs. 37543 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr15:57,232,365
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 417491 as yet unmatched pairs. 36475 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr15:60,354,153
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 414620 as yet unmatched pairs. 33604 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr15:63,559,915
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 411997 as yet unmatched pairs. 30981 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr15:65,466,727
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 409806 as yet unmatched pairs. 28786 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr15:66,503,441
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 407243 as yet unmatched pairs. 26223 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr15:70,066,120
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 404576 as yet unmatched pairs. 23556 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr15:72,210,319
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 403962 as yet unmatched pairs. 22942 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr15:73,998,307
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 400931 as yet unmatched pairs. 19909 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr15:74,929,154
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 398765 as yet unmatched pairs. 17739 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr15:76,286,374
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 396172 as yet unmatched pairs. 15133 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr15:78,923,004
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 395562 as yet unmatched pairs. 14523 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr15:82,372,473
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 391721 as yet unmatched pairs. 10682 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr15:85,708,041
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 388359 as yet unmatched pairs. 7320 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr15:90,228,040
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 387539 as yet unmatched pairs. 6500 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr15:92,601,467
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 383360 as yet unmatched pairs. 2320 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr15:101,384,411
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 381224 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr16:672,966
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 379509 as yet unmatched pairs. 59096 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr16:1,822,937
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 376019 as yet unmatched pairs. 55606 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr16:2,595,835
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 373186 as yet unmatched pairs. 52773 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr16:2,929,754
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 371090 as yet unmatched pairs. 50677 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr16:4,883,655
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 368408 as yet unmatched pairs. 47985 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr16:14,246,715
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 366391 as yet unmatched pairs. 45967 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr16:15,031,822
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 365115 as yet unmatched pairs. 44691 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr16:16,320,960
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 363744 as yet unmatched pairs. 43320 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr16:18,349,633
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 363405 as yet unmatched pairs. 42981 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr16:18,784,797
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 364462 as yet unmatched pairs. 44038 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,377
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 360106 as yet unmatched pairs. 39680 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr16:21,851,064
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 359077 as yet unmatched pairs. 38651 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,238
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 358240 as yet unmatched pairs. 37814 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr16:27,549,728
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 356138 as yet unmatched pairs. 35712 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr16:28,873,508
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 354005 as yet unmatched pairs. 33578 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr16:29,807,348
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 353067 as yet unmatched pairs. 32640 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr16:30,069,954
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 354255 as yet unmatched pairs. 33827 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 2s. Last read position: chr16:30,398,688
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 348422 as yet unmatched pairs. 27994 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr16:31,093,369
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 346191 as yet unmatched pairs. 25762 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr16:48,361,546
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 343972 as yet unmatched pairs. 23543 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr16:56,935,411
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 341730 as yet unmatched pairs. 21296 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr16:58,588,905
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 339627 as yet unmatched pairs. 19192 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr16:67,877,297
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 336843 as yet unmatched pairs. 16407 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr16:69,114,855
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 335034 as yet unmatched pairs. 14585 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr16:70,316,066
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 332522 as yet unmatched pairs. 12073 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr16:72,957,942
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 330072 as yet unmatched pairs. 9621 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr16:82,035,450
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 328853 as yet unmatched pairs. 8402 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr16:87,392,367
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 325225 as yet unmatched pairs. 4774 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr16:89,544,681
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 322954 as yet unmatched pairs. 2503 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr17:1,011,909
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 320178 as yet unmatched pairs. 97229 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr17:1,728,043
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 317941 as yet unmatched pairs. 94992 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr17:4,672,491
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 315391 as yet unmatched pairs. 92442 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr17:7,220,120
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 313326 as yet unmatched pairs. 90369 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr17:7,503,585
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 310704 as yet unmatched pairs. 87747 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr17:7,902,702
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 308452 as yet unmatched pairs. 85494 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr17:16,381,118
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 306682 as yet unmatched pairs. 83724 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr17:17,820,257
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 304031 as yet unmatched pairs. 81071 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr17:21,304,530
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 301514 as yet unmatched pairs. 78553 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr17:28,720,011
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 299200 as yet unmatched pairs. 76239 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr17:30,484,212
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 296873 as yet unmatched pairs. 73912 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr17:35,259,519
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 294995 as yet unmatched pairs. 72034 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr17:36,538,068
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 293373 as yet unmatched pairs. 70411 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr17:38,132,633
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 292296 as yet unmatched pairs. 69334 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr17:38,769,725
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 290362 as yet unmatched pairs. 67400 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr17:39,685,939
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 288034 as yet unmatched pairs. 65066 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr17:39,717,386
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 287862 as yet unmatched pairs. 64894 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr17:39,924,118
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 283382 as yet unmatched pairs. 60413 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr17:41,502,965
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 280888 as yet unmatched pairs. 57919 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr17:41,619,444
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 278171 as yet unmatched pairs. 55202 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr17:41,755,788
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 276495 as yet unmatched pairs. 53526 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr17:42,562,993
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 273077 as yet unmatched pairs. 50108 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr17:44,074,691
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 271277 as yet unmatched pairs. 48297 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr17:45,169,209
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 268020 as yet unmatched pairs. 45040 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr17:47,586,183
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 266601 as yet unmatched pairs. 43621 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,056,573
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 264710 as yet unmatched pairs. 41730 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,805
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 262768 as yet unmatched pairs. 39788 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,668,488
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 259207 as yet unmatched pairs. 36226 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr17:57,110,101
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 256413 as yet unmatched pairs. 33432 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr17:59,674,802
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 255087 as yet unmatched pairs. 32106 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr17:61,405,734
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 251850 as yet unmatched pairs. 28869 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr17:64,452,661
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 249150 as yet unmatched pairs. 26169 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr17:68,512,491
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 247596 as yet unmatched pairs. 24615 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr17:74,440,766
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 245210 as yet unmatched pairs. 22229 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr17:75,603,034
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 242075 as yet unmatched pairs. 19092 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr17:75,901,775
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 239619 as yet unmatched pairs. 16636 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,240
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 238157 as yet unmatched pairs. 15173 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr17:78,974,805
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 235016 as yet unmatched pairs. 12032 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr17:80,347,150
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 232484 as yet unmatched pairs. 9500 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr17:81,512,028
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 231862 as yet unmatched pairs. 8878 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr17:81,899,943
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 227768 as yet unmatched pairs. 4784 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr17:82,237,770
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 224803 as yet unmatched pairs. 1818 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr18:6,462,225
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 222241 as yet unmatched pairs. 12016 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr18:12,358,872
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 219912 as yet unmatched pairs. 9687 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr18:35,337,387
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 217953 as yet unmatched pairs. 7727 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr18:47,869,361
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 215971 as yet unmatched pairs. 5745 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr18:57,662,569
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 213859 as yet unmatched pairs. 3633 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr18:74,260,926
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 211753 as yet unmatched pairs. 1527 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr19:648,220
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 208816 as yet unmatched pairs. 91522 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr19:1,250,460
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 206024 as yet unmatched pairs. 88729 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr19:1,978,648
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 203076 as yet unmatched pairs. 85781 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr19:2,997,752
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 200398 as yet unmatched pairs. 83102 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr19:4,442,305
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 197804 as yet unmatched pairs. 80508 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr19:5,691,363
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 195674 as yet unmatched pairs. 78378 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr19:7,467,504
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 192861 as yet unmatched pairs. 75564 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr19:9,302,467
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 190369 as yet unmatched pairs. 73072 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr19:10,638,027
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 188599 as yet unmatched pairs. 71291 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr19:11,342,947
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 186036 as yet unmatched pairs. 68728 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr19:12,774,627
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 183573 as yet unmatched pairs. 66265 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr19:14,093,679
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 181079 as yet unmatched pairs. 63771 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr19:15,181,633
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 178651 as yet unmatched pairs. 61343 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr19:15,615,268
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 176260 as yet unmatched pairs. 58950 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr19:17,301,121
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 172906 as yet unmatched pairs. 55595 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr19:18,386,209
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 172438 as yet unmatched pairs. 55127 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr19:18,900,397
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 167939 as yet unmatched pairs. 50628 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr19:23,360,743
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 165218 as yet unmatched pairs. 47907 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr19:34,396,352
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 163394 as yet unmatched pairs. 46082 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr19:35,269,580
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 160498 as yet unmatched pairs. 43186 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr19:36,183,659
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 157969 as yet unmatched pairs. 40657 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr19:38,727,966
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 155954 as yet unmatched pairs. 38642 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,685
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 156964 as yet unmatched pairs. 39651 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr19:40,377,835
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 151051 as yet unmatched pairs. 33737 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr19:42,090,376
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 148305 as yet unmatched pairs. 30991 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr19:42,509,163
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 145776 as yet unmatched pairs. 28459 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr19:45,145,822
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 143384 as yet unmatched pairs. 26067 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr19:46,016,347
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 140711 as yet unmatched pairs. 23393 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr19:48,121,233
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 138052 as yet unmatched pairs. 20733 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 129s. Last read position: chr19:48,985,868
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 135817 as yet unmatched pairs. 18498 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,939
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 135432 as yet unmatched pairs. 18113 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr19:49,888,433
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 130372 as yet unmatched pairs. 13053 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr19:52,067,244
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 128112 as yet unmatched pairs. 10793 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr19:54,163,837
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 126059 as yet unmatched pairs. 8740 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr19:55,080,174
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 123577 as yet unmatched pairs. 6258 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr19:56,088,689
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 120694 as yet unmatched pairs. 3375 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr19:58,393,164
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 118935 as yet unmatched pairs. 1616 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr20:2,116,723
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 116140 as yet unmatched pairs. 30932 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr20:6,006,464
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 113413 as yet unmatched pairs. 28205 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr20:20,526,297
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 111231 as yet unmatched pairs. 26023 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 2s. Last read position: chr20:31,605,739
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 110549 as yet unmatched pairs. 25341 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr20:34,856,748
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 106171 as yet unmatched pairs. 20963 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr20:36,206,867
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 103718 as yet unmatched pairs. 18510 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chr20:41,174,268
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 101596 as yet unmatched pairs. 16385 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr20:45,366,925
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 99796 as yet unmatched pairs. 14585 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr20:48,995,814
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 97447 as yet unmatched pairs. 12236 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr20:53,581,813
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 95217 as yet unmatched pairs. 10006 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr20:59,035,008
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 92397 as yet unmatched pairs. 7182 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr20:62,335,022
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 90445 as yet unmatched pairs. 5230 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 2s. Last read position: chr20:63,521,757
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 89434 as yet unmatched pairs. 4218 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,210,843
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 84935 as yet unmatched pairs. 14677 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,634
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 83818 as yet unmatched pairs. 13550 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr21:26,844,422
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 81617 as yet unmatched pairs. 11348 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 2s. Last read position: chr21:33,552,473
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 80693 as yet unmatched pairs. 10424 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr21:37,486,493
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 77094 as yet unmatched pairs. 6825 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr21:41,991,131
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 74674 as yet unmatched pairs. 4405 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr21:44,326,751
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 72410 as yet unmatched pairs. 2140 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr22:17,817,791
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 69740 as yet unmatched pairs. 33578 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr22:20,802,038
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 67536 as yet unmatched pairs. 31374 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr22:23,787,157
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 64955 as yet unmatched pairs. 28793 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr22:29,273,771
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 63453 as yet unmatched pairs. 27291 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr22:29,998,788
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 59742 as yet unmatched pairs. 23580 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr22:33,384,273
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 57557 as yet unmatched pairs. 21395 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr22:36,316,534
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 55331 as yet unmatched pairs. 19169 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr22:37,855,615
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 53195 as yet unmatched pairs. 17033 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,264
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 50228 as yet unmatched pairs. 14066 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr22:41,129,891
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 48261 as yet unmatched pairs. 12099 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr22:42,210,341
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 45596 as yet unmatched pairs. 9434 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 2s. Last read position: chr22:45,547,120
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 43779 as yet unmatched pairs. 7617 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr22:50,197,489
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 40671 as yet unmatched pairs. 4509 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr22:50,447,179
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 37756 as yet unmatched pairs. 1594 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chrX:3,317,214
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 34895 as yet unmatched pairs. 30343 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chrX:19,542,018
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 32833 as yet unmatched pairs. 28270 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chrX:41,129,017
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 30968 as yet unmatched pairs. 26404 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chrX:47,199,251
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 28824 as yet unmatched pairs. 24258 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chrX:49,039,148
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 26608 as yet unmatched pairs. 22042 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chrX:53,564,572
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 23978 as yet unmatched pairs. 19412 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chrX:70,492,339
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 21628 as yet unmatched pairs. 17062 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chrX:72,275,689
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 19438 as yet unmatched pairs. 14872 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chrX:85,367,712
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 17366 as yet unmatched pairs. 12800 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chrX:108,668,329
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 15395 as yet unmatched pairs. 10829 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chrX:129,516,331
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 13354 as yet unmatched pairs. 8788 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chrX:149,932,679
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 11604 as yet unmatched pairs. 7038 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chrX:153,775,895
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 9037 as yet unmatched pairs. 4471 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 2s. Last read position: chrX:154,432,308
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 6835 as yet unmatched pairs. 2269 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chrY:12,818,492
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 4109 as yet unmatched pairs. 596 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,512
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 2167 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,714
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 16 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 560082517 records. 0 pairs never matched.
INFO 2026-06-08 08:47:11 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142656; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:47:11 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:47:16 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:47:16 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:47:49 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 08:47:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,025
INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1190
INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,529
INFO 2026-06-08 08:48:51 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:48:51 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:49:46 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:49:53 MarkDuplicates After generateDuplicateIndexes freeMemory: 204003320; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:49:53 MarkDuplicates Marking 385865263 records as duplicates.
INFO 2026-06-08 08:49:53 MarkDuplicates Found 11056645 optical duplicate clusters.
INFO 2026-06-08 08:49:53 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:50:08 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:23,092,725
INFO 2026-06-08 08:50:23 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:29s. Time for last 10,000,000: 14s. Last read position: chr1:43,617,445
INFO 2026-06-08 08:50:38 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:44s. Time for last 10,000,000: 15s. Last read position: chr1:112,701,629
INFO 2026-06-08 08:50:53 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:00:59s. Time for last 10,000,000: 15s. Last read position: chr1:155,051,374
INFO 2026-06-08 08:51:08 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:15s. Time for last 10,000,000: 15s. Last read position: chr1:203,305,707
INFO 2026-06-08 08:51:23 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:30s. Time for last 10,000,000: 15s. Last read position: chr2:20,258,277
INFO 2026-06-08 08:51:38 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 14s. Last read position: chr2:61,071,777
INFO 2026-06-08 08:51:58 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 20s. Last read position: chr2:113,437,877
INFO 2026-06-08 08:52:20 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:27s. Time for last 10,000,000: 21s. Last read position: chr2:219,232,589
INFO 2026-06-08 08:52:35 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:42s. Time for last 10,000,000: 15s. Last read position: chr3:40,461,463
INFO 2026-06-08 08:52:50 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:57s. Time for last 10,000,000: 15s. Last read position: chr3:64,019,305
INFO 2026-06-08 08:53:09 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 18s. Last read position: chr3:184,302,712
INFO 2026-06-08 08:53:24 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 15s. Last read position: chr4:15,638,545
INFO 2026-06-08 08:53:41 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:48s. Time for last 10,000,000: 16s. Last read position: chr4:164,284,881
INFO 2026-06-08 08:53:57 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 16s. Last read position: chr5:87,269,166
INFO 2026-06-08 08:54:16 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:22s. Time for last 10,000,000: 18s. Last read position: chr5:151,568,243
INFO 2026-06-08 08:54:31 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 14s. Last read position: chr6:27,831,233
INFO 2026-06-08 08:54:48 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:55s. Time for last 10,000,000: 17s. Last read position: chr6:44,247,143
INFO 2026-06-08 08:55:05 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:11s. Time for last 10,000,000: 16s. Last read position: chr6:157,148,694
INFO 2026-06-08 08:55:20 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:27s. Time for last 10,000,000: 15s. Last read position: chr7:55,157,699
INFO 2026-06-08 08:55:35 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:42s. Time for last 10,000,000: 15s. Last read position: chr7:100,955,425
INFO 2026-06-08 08:55:50 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:57s. Time for last 10,000,000: 15s. Last read position: chr8:458,235
INFO 2026-06-08 08:56:08 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:15s. Time for last 10,000,000: 17s. Last read position: chr8:73,291,638
INFO 2026-06-08 08:56:24 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 16s. Last read position: chr8:143,649,938
INFO 2026-06-08 08:56:38 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 14s. Last read position: chr8:144,394,798
INFO 2026-06-08 08:56:53 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:00s. Time for last 10,000,000: 14s. Last read position: chr9:128,693,636
INFO 2026-06-08 08:57:08 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:14s. Time for last 10,000,000: 14s. Last read position: chr10:43,386,986
INFO 2026-06-08 08:57:25 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:31s. Time for last 10,000,000: 16s. Last read position: chr10:129,759,210
INFO 2026-06-08 08:57:40 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:47s. Time for last 10,000,000: 15s. Last read position: chr11:45,805,925
INFO 2026-06-08 08:57:55 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:01s. Time for last 10,000,000: 14s. Last read position: chr11:65,654,366
INFO 2026-06-08 08:58:09 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:16s. Time for last 10,000,000: 14s. Last read position: chr11:116,858,600
INFO 2026-06-08 08:58:26 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:33s. Time for last 10,000,000: 16s. Last read position: chr12:12,787,141
INFO 2026-06-08 08:58:44 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:51s. Time for last 10,000,000: 18s. Last read position: chr12:55,980,966
INFO 2026-06-08 08:59:01 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 17s. Last read position: chr12:112,319,596
INFO 2026-06-08 08:59:21 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 19s. Last read position: chr13:45,340,712
INFO 2026-06-08 08:59:39 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:46s. Time for last 10,000,000: 17s. Last read position: chr14:49,621,411
INFO 2026-06-08 08:59:59 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:06s. Time for last 10,000,000: 20s. Last read position: chr14:104,756,635
INFO 2026-06-08 09:00:20 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:27s. Time for last 10,000,000: 20s. Last read position: chr15:57,232,365
INFO 2026-06-08 09:00:38 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 18s. Last read position: chr15:78,923,004
INFO 2026-06-08 09:00:57 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:04s. Time for last 10,000,000: 18s. Last read position: chr16:4,883,655
INFO 2026-06-08 09:01:15 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:22s. Time for last 10,000,000: 17s. Last read position: chr16:28,873,508
INFO 2026-06-08 09:01:32 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:39s. Time for last 10,000,000: 17s. Last read position: chr16:70,316,066
INFO 2026-06-08 09:01:49 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:56s. Time for last 10,000,000: 17s. Last read position: chr17:7,902,702
INFO 2026-06-08 09:02:04 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:11s. Time for last 10,000,000: 14s. Last read position: chr17:39,685,939
INFO 2026-06-08 09:02:19 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 14s. Last read position: chr17:50,056,573
INFO 2026-06-08 09:02:34 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 15s. Last read position: chr17:75,901,775
INFO 2026-06-08 09:02:49 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:56s. Time for last 10,000,000: 15s. Last read position: chr18:47,869,361
INFO 2026-06-08 09:03:04 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 15s. Last read position: chr19:9,302,467
INFO 2026-06-08 09:03:20 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:27s. Time for last 10,000,000: 15s. Last read position: chr19:23,360,743
INFO 2026-06-08 09:03:38 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:45s. Time for last 10,000,000: 17s. Last read position: chr19:46,016,347
INFO 2026-06-08 09:03:53 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:00s. Time for last 10,000,000: 15s. Last read position: chr20:2,116,723
INFO 2026-06-08 09:04:08 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:15s. Time for last 10,000,000: 15s. Last read position: chr20:59,035,008
INFO 2026-06-08 09:04:23 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:30s. Time for last 10,000,000: 15s. Last read position: chr22:17,817,791
INFO 2026-06-08 09:04:38 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:45s. Time for last 10,000,000: 15s. Last read position: chr22:42,210,341
INFO 2026-06-08 09:04:54 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:01s. Time for last 10,000,000: 15s. Last read position: chrX:70,492,339
INFO 2026-06-08 09:05:08 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 14s. Last read position: KI270733.1:178,714
INFO 2026-06-08 09:05:14 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:05:14 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:05:14 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:05:14 MarkDuplicates Before output close freeMemory: 203969952; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:05:14 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:05:15 MarkDuplicates After output close freeMemory: 104211568; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:05:15 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 36.62 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory