Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_bld_02_A23WKFTLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:30:46.177 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:30:46 GMT 2026] MarkDuplicates --INPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_bld_02_A23WKFTLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:30:46 GMT 2026] Executing as ?@nf-4cb94a0e549f8056683ed878a50267d6-ba937-rgjgw on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:30:46 MarkDuplicates Start of doWork freeMemory: 105828216; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:30:46 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:30:46 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,051,522
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 3223 as yet unmatched pairs. 838 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:1,642,353
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 5139 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:3,782,701
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 7515 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:8,360,261
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 9931 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:10,303,621
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 11969 as yet unmatched pairs. 40 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:12,293,528
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 14327 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:15,932,255
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 16291 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:17,271,168
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 18890 as yet unmatched pairs. 552 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:19,227,341
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 20828 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:21,428,688
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 23085 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:22,906,765
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 25225 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:23,961,035
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 27705 as yet unmatched pairs. 316 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:26,281,084
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 30415 as yet unmatched pairs. 935 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:27,109,550
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 32021 as yet unmatched pairs. 293 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:28,743,656
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 34486 as yet unmatched pairs. 562 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:31,434,091
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 37115 as yet unmatched pairs. 821 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:32,228,514
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 39412 as yet unmatched pairs. 685 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:32,937,178
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 41187 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:36,174,956
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 43405 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:39,461,984
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 45552 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:42,500,239
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 47722 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:43,427,717
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 50163 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:43,619,384
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 53257 as yet unmatched pairs. 607 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:45,511,401
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 55257 as yet unmatched pairs. 289 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:46,718,114
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 57843 as yet unmatched pairs. 859 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:51,819,849
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 59479 as yet unmatched pairs. 424 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:55,072,322
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 61349 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:62,805,184
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 63636 as yet unmatched pairs. 30 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:77,728,638
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 66060 as yet unmatched pairs. 398 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:89,058,038
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 67746 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:94,891,165
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 70024 as yet unmatched pairs. 217 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:109,237,338
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 71631 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:109,671,520
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 76796 as yet unmatched pairs. 3179 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:111,448,754
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 76012 as yet unmatched pairs. 380 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:114,463,127
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 78463 as yet unmatched pairs. 760 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:117,402,276
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 79900 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:119,955,132
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 82530 as yet unmatched pairs. 765 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:145,842,378
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 83041 as yet unmatched pairs. 37 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:146,982,934
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 84259 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:148,866,760
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 85303 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,284
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 87041 as yet unmatched pairs. 534 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:150,949,127
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 88778 as yet unmatched pairs. 94 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:151,813,245
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 90926 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:153,747,302
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 93152 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:154,228,631
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 95351 as yet unmatched pairs. 312 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:155,169,438
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 97319 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:155,721,524
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 99581 as yet unmatched pairs. 493 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,402
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 103275 as yet unmatched pairs. 1708 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:156,782,297
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 104171 as yet unmatched pairs. 125 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:160,419,550
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 106164 as yet unmatched pairs. 39 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:165,668,952
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 108200 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,712
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 110847 as yet unmatched pairs. 781 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:180,020,459
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 112272 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:183,545,060
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 114389 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:186,371,026
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 116765 as yet unmatched pairs. 689 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:201,384,792
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 118520 as yet unmatched pairs. 340 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:202,942,129
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 120737 as yet unmatched pairs. 365 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:204,431,698
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 122760 as yet unmatched pairs. 289 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:207,523,911
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 124536 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:212,051,490
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 126803 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:223,712,663
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 128727 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:226,385,668
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 130713 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:230,250,483
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 133220 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:236,183,798
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 135425 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:247,038,171
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 137405 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:9,951,775
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 139807 as yet unmatched pairs. 139300 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:20,202,771
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 146028 as yet unmatched pairs. 145510 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,067
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 149871 as yet unmatched pairs. 149347 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr2:24,254,401
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 146411 as yet unmatched pairs. 145880 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:27,204,816
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 148529 as yet unmatched pairs. 147977 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:28,778,865
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 153416 as yet unmatched pairs. 152858 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,672,342
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 153127 as yet unmatched pairs. 152547 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 515889 as yet unmatched pairs. 122766 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,384
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 1100719 as yet unmatched pairs. 74817 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 1141598 as yet unmatched pairs. 71534 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:37,027,938
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 1205503 as yet unmatched pairs. 65789 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:42,303,429
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 1204750 as yet unmatched pairs. 65024 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:46,380,592
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 1201189 as yet unmatched pairs. 61451 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:54,655,069
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 1199473 as yet unmatched pairs. 59717 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:61,248,660
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 1197274 as yet unmatched pairs. 57507 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:69,152,120
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 1195123 as yet unmatched pairs. 55339 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:73,259,191
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 1192882 as yet unmatched pairs. 53090 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:74,874,289
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 1190513 as yet unmatched pairs. 50719 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:86,466,672
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 1188429 as yet unmatched pairs. 48630 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:95,288,258
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 1188644 as yet unmatched pairs. 48831 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:98,566,072
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 1184478 as yet unmatched pairs. 44661 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:101,831,828
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 1182305 as yet unmatched pairs. 42481 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:108,764,187
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 1181204 as yet unmatched pairs. 41374 records in RAM.
INFO 2026-06-08 08:33:20 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:110,523,634
INFO 2026-06-08 08:33:20 MarkDuplicates Tracking 1179527 as yet unmatched pairs. 39687 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:112,575,627
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 1178518 as yet unmatched pairs. 38678 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:113,218,563
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 1177976 as yet unmatched pairs. 38115 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:121,727,748
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 1174712 as yet unmatched pairs. 34843 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:134,953,284
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 1172870 as yet unmatched pairs. 32975 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:157,761,032
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 1170747 as yet unmatched pairs. 30827 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:164,722,210
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 1168964 as yet unmatched pairs. 29027 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:173,955,670
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 1167149 as yet unmatched pairs. 27201 records in RAM.
INFO 2026-06-08 08:33:33 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:179,124,494
INFO 2026-06-08 08:33:33 MarkDuplicates Tracking 1164924 as yet unmatched pairs. 24961 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:190,436,292
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 1162895 as yet unmatched pairs. 22928 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:200,822,180
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 1160686 as yet unmatched pairs. 20708 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:206,159,934
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 1159762 as yet unmatched pairs. 19779 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,379
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 1156655 as yet unmatched pairs. 16661 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:218,249,857
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 1154329 as yet unmatched pairs. 14329 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:219,250,996
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 1152141 as yet unmatched pairs. 12140 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:229,768,646
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 1150041 as yet unmatched pairs. 9989 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:231,711,345
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 1147854 as yet unmatched pairs. 7790 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:233,719,280
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 1148872 as yet unmatched pairs. 8798 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:237,763,637
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 1143314 as yet unmatched pairs. 3233 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:241,346,239
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 1140888 as yet unmatched pairs. 798 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr3:9,780,418
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 1138648 as yet unmatched pairs. 68332 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:12,590,838
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 1137017 as yet unmatched pairs. 66688 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:14,820,907
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 1134369 as yet unmatched pairs. 64032 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:25,719,453
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 1132440 as yet unmatched pairs. 62097 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:37,298,987
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 1130262 as yet unmatched pairs. 59906 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:39,412,305
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 1128166 as yet unmatched pairs. 57806 records in RAM.
INFO 2026-06-08 08:34:02 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:42,502,728
INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 1126017 as yet unmatched pairs. 55653 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:46,408,094
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 1123733 as yet unmatched pairs. 53357 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:47,714,437
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 1121553 as yet unmatched pairs. 51173 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:48,469,740
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 1121443 as yet unmatched pairs. 51056 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:49,013,832
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 1116604 as yet unmatched pairs. 46216 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:49,357,702
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 1115685 as yet unmatched pairs. 45297 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr3:50,057,829
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 1112085 as yet unmatched pairs. 41696 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:51,969,852
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 1109888 as yet unmatched pairs. 39495 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:52,524,501
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 1107770 as yet unmatched pairs. 37345 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:55,470,070
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 1105671 as yet unmatched pairs. 35240 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:58,154,844
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 1103522 as yet unmatched pairs. 33089 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:75,214,614
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 1101008 as yet unmatched pairs. 30546 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:101,682,778
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 1100520 as yet unmatched pairs. 30052 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:119,216,245
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 1097184 as yet unmatched pairs. 26704 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:123,502,591
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 1095304 as yet unmatched pairs. 24823 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:127,017,475
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 1092955 as yet unmatched pairs. 22457 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:129,439,734
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 1090752 as yet unmatched pairs. 20248 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:138,223,711
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 1088634 as yet unmatched pairs. 18123 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:149,198,547
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 1086558 as yet unmatched pairs. 16038 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:158,697,770
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 1085059 as yet unmatched pairs. 14530 records in RAM.
INFO 2026-06-08 08:34:35 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:169,779,438
INFO 2026-06-08 08:34:35 MarkDuplicates Tracking 1082665 as yet unmatched pairs. 12123 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:180,976,122
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 1080675 as yet unmatched pairs. 10120 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:184,306,445
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 1078435 as yet unmatched pairs. 7869 records in RAM.
INFO 2026-06-08 08:34:40 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:186,785,919
INFO 2026-06-08 08:34:40 MarkDuplicates Tracking 1077011 as yet unmatched pairs. 6428 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:190,308,324
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 1074798 as yet unmatched pairs. 4192 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:195,784,964
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 1072918 as yet unmatched pairs. 2305 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:197,883,616
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 1070830 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr4:1,735,311
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 1068635 as yet unmatched pairs. 45644 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr4:1,799,427
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 1070469 as yet unmatched pairs. 47477 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:1,804,402
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 1068034 as yet unmatched pairs. 45037 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:1,806,274
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 1072890 as yet unmatched pairs. 49893 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:2,497,112
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 1059006 as yet unmatched pairs. 36006 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:6,300,778
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 1056472 as yet unmatched pairs. 33455 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:10,097,710
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 1054327 as yet unmatched pairs. 31300 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:30,722,998
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 1051849 as yet unmatched pairs. 28813 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:41,613,642
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 1050444 as yet unmatched pairs. 27394 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:55,359,388
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 1047702 as yet unmatched pairs. 24642 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr4:73,077,383
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 1045683 as yet unmatched pairs. 22609 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr4:77,774,703
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 1043637 as yet unmatched pairs. 20557 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:86,101,995
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 1041845 as yet unmatched pairs. 18756 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:88,767,963
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 1039860 as yet unmatched pairs. 16769 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:105,237,324
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 1037798 as yet unmatched pairs. 14701 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:121,848,898
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 1035698 as yet unmatched pairs. 12597 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:139,890,269
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 1034117 as yet unmatched pairs. 11001 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr4:150,914,237
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 1032110 as yet unmatched pairs. 8981 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr4:165,333,433
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 1029951 as yet unmatched pairs. 6820 records in RAM.
INFO 2026-06-08 08:35:21 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:174,491,256
INFO 2026-06-08 08:35:21 MarkDuplicates Tracking 1033428 as yet unmatched pairs. 10291 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:184,009,775
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 1025656 as yet unmatched pairs. 2515 records in RAM.
INFO 2026-06-08 08:35:24 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:186,707,101
INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 1024080 as yet unmatched pairs. 938 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr5:9,224,768
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 1021640 as yet unmatched pairs. 55446 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr5:14,488,191
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 1019372 as yet unmatched pairs. 53174 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:36,226,475
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 1017398 as yet unmatched pairs. 51191 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:43,704,342
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 1015473 as yet unmatched pairs. 49260 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:65,563,424
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 1013572 as yet unmatched pairs. 47336 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:70,473,512
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 1011630 as yet unmatched pairs. 45385 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:75,342,641
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 1009704 as yet unmatched pairs. 43453 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,079
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 1011434 as yet unmatched pairs. 45174 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:95,913,835
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 1005971 as yet unmatched pairs. 39705 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr5:112,840,323
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 1003898 as yet unmatched pairs. 37624 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:126,477,745
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 1002281 as yet unmatched pairs. 35996 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:132,896,966
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 999946 as yet unmatched pairs. 33653 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:136,177,335
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 998086 as yet unmatched pairs. 31783 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:139,317,052
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 995505 as yet unmatched pairs. 29197 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:141,123,703
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 993304 as yet unmatched pairs. 26885 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:141,864,513
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 992563 as yet unmatched pairs. 26139 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:147,828,026
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 998746 as yet unmatched pairs. 32312 records in RAM.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,135,632
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 987336 as yet unmatched pairs. 20901 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,185
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 986409 as yet unmatched pairs. 19961 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:151,565,910
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 982819 as yet unmatched pairs. 16368 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:160,403,311
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 980701 as yet unmatched pairs. 14244 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,717
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 982583 as yet unmatched pairs. 16115 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:176,290,098
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 977021 as yet unmatched pairs. 10552 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:178,055,953
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 974815 as yet unmatched pairs. 8334 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:179,801,636
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 972803 as yet unmatched pairs. 6319 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,448
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 975902 as yet unmatched pairs. 9414 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:181,236,964
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 969873 as yet unmatched pairs. 3376 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr6:3,273,319
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 965591 as yet unmatched pairs. 64276 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:7,585,764
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 963538 as yet unmatched pairs. 62217 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:19,837,665
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 961079 as yet unmatched pairs. 59746 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:26,188,792
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 958904 as yet unmatched pairs. 57569 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:28,136,778
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 956544 as yet unmatched pairs. 55206 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:30,606,160
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 954670 as yet unmatched pairs. 53311 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:31,270,332
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 952680 as yet unmatched pairs. 51320 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:31,647,595
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 950237 as yet unmatched pairs. 48874 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,156
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 948562 as yet unmatched pairs. 47199 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:32,219,597
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 946164 as yet unmatched pairs. 44793 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:33,292,127
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 944300 as yet unmatched pairs. 42927 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:34,288,676
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 941819 as yet unmatched pairs. 40434 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:36,200,306
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 939788 as yet unmatched pairs. 38401 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:42,055,531
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 937493 as yet unmatched pairs. 36096 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:43,337,366
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 935104 as yet unmatched pairs. 33704 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:44,232,847
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 932917 as yet unmatched pairs. 31514 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:47,286,011
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 933868 as yet unmatched pairs. 32461 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:56,459,062
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 928741 as yet unmatched pairs. 27314 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:65,302,854
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 926672 as yet unmatched pairs. 25241 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:80,171,291
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 924766 as yet unmatched pairs. 23332 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:89,080,769
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 923059 as yet unmatched pairs. 21620 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:106,512,917
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 920807 as yet unmatched pairs. 19361 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:111,333,236
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 918460 as yet unmatched pairs. 16992 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:125,888,995
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 916468 as yet unmatched pairs. 14982 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr6:136,613,129
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 914526 as yet unmatched pairs. 13035 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:142,204,027
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 912256 as yet unmatched pairs. 10758 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:149,742,527
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 910276 as yet unmatched pairs. 8767 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:158,071,643
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 908221 as yet unmatched pairs. 6703 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:158,784,703
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 907041 as yet unmatched pairs. 5517 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:160,644,939
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 903948 as yet unmatched pairs. 2420 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:170,318,601
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 901982 as yet unmatched pairs. 439 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:2,649,964
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 899368 as yet unmatched pairs. 61077 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,765
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 900294 as yet unmatched pairs. 61995 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,574
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 895867 as yet unmatched pairs. 57566 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:11,061,800
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 892281 as yet unmatched pairs. 53975 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:23,273,529
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 891265 as yet unmatched pairs. 52954 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:30,875,565
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 888219 as yet unmatched pairs. 49903 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr7:44,115,324
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 886425 as yet unmatched pairs. 48098 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:55,099,662
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 884648 as yet unmatched pairs. 46306 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:64,979,467
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 882007 as yet unmatched pairs. 43665 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:73,072,607
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 880509 as yet unmatched pairs. 42166 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:74,194,792
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 879475 as yet unmatched pairs. 41131 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:75,217,205
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 878047 as yet unmatched pairs. 39700 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,696
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 877744 as yet unmatched pairs. 39395 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:76,329,690
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 873425 as yet unmatched pairs. 35076 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:76,995,495
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 871406 as yet unmatched pairs. 33054 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:91,973,951
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 870112 as yet unmatched pairs. 31757 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:96,694,812
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 867976 as yet unmatched pairs. 29617 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:99,493,900
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 865349 as yet unmatched pairs. 26983 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,474,329
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 863408 as yet unmatched pairs. 25032 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,954,576
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 861105 as yet unmatched pairs. 22726 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:101,206,325
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 859163 as yet unmatched pairs. 20781 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:102,639,123
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 858279 as yet unmatched pairs. 19896 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr7:106,660,234
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 856416 as yet unmatched pairs. 18033 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:120,788,625
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 854610 as yet unmatched pairs. 16221 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:128,338,291
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 852442 as yet unmatched pairs. 14052 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:134,965,306
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 850483 as yet unmatched pairs. 12090 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:139,575,266
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 848321 as yet unmatched pairs. 9917 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:142,870,565
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 846348 as yet unmatched pairs. 7944 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:144,285,167
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 844629 as yet unmatched pairs. 6220 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 69s. Last read position: chr7:150,396,803
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 842407 as yet unmatched pairs. 3996 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:152,187,779
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 840132 as yet unmatched pairs. 1714 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr8:7,977,765
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 837984 as yet unmatched pairs. 67848 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr8:15,730,676
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 836981 as yet unmatched pairs. 66845 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:22,002,119
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 833666 as yet unmatched pairs. 63526 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr8:23,068,812
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 831356 as yet unmatched pairs. 61214 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:29,167,468
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 829117 as yet unmatched pairs. 58971 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr8:37,872,622
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 826926 as yet unmatched pairs. 56774 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:38,847,984
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 825338 as yet unmatched pairs. 55185 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr8:42,314,386
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 822663 as yet unmatched pairs. 52504 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:47,939,573
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 820574 as yet unmatched pairs. 50405 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,705
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 820010 as yet unmatched pairs. 49835 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:61,684,174
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 816550 as yet unmatched pairs. 46355 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:70,156,982
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 815120 as yet unmatched pairs. 44923 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:80,645,042
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 812540 as yet unmatched pairs. 42339 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:94,526,272
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 810673 as yet unmatched pairs. 40468 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:98,212,416
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 808799 as yet unmatched pairs. 38594 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,791
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 808534 as yet unmatched pairs. 38324 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:100,718,180
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 815120 as yet unmatched pairs. 44910 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:102,652,173
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 802254 as yet unmatched pairs. 32041 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:116,852,549
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 800498 as yet unmatched pairs. 30266 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:124,543,253
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 798390 as yet unmatched pairs. 28153 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:133,239,036
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 800238 as yet unmatched pairs. 29984 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:140,532,470
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 793425 as yet unmatched pairs. 23171 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:142,785,287
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 791020 as yet unmatched pairs. 20761 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,726,432
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 788530 as yet unmatched pairs. 18269 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,266
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 785936 as yet unmatched pairs. 15674 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 0s. Last read position: chr8:143,859,900
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 785361 as yet unmatched pairs. 15099 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,484
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 784780 as yet unmatched pairs. 14517 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,005
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 787485 as yet unmatched pairs. 17222 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,644
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 783906 as yet unmatched pairs. 13641 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,206
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 782201 as yet unmatched pairs. 11935 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,872,657
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 780937 as yet unmatched pairs. 10668 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,527
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 777929 as yet unmatched pairs. 7659 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:144,096,435
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 775285 as yet unmatched pairs. 5012 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:144,440,033
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 772397 as yet unmatched pairs. 2123 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:711,040
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 770763 as yet unmatched pairs. 30616 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:14,155,854
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 768321 as yet unmatched pairs. 28167 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:26,842,356
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 766079 as yet unmatched pairs. 25924 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:35,057,182
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 764284 as yet unmatched pairs. 24119 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:37,801,221
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 761653 as yet unmatched pairs. 21461 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:77,213,307
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 760041 as yet unmatched pairs. 19840 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr9:92,976,273
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 757849 as yet unmatched pairs. 17641 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:105,309,736
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 755712 as yet unmatched pairs. 15495 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:114,252,878
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 753488 as yet unmatched pairs. 13265 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:125,238,707
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 751458 as yet unmatched pairs. 11228 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:128,579,717
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 749036 as yet unmatched pairs. 8802 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:131,446,417
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 746879 as yet unmatched pairs. 6641 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:134,050,511
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 744626 as yet unmatched pairs. 4387 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:136,850,780
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 742172 as yet unmatched pairs. 1930 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:1,048,970
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 739635 as yet unmatched pairs. 39866 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr10:4,991,842
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 739755 as yet unmatched pairs. 39983 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:5,747,588
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 735944 as yet unmatched pairs. 36169 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr10:8,073,914
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 735061 as yet unmatched pairs. 35284 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 2s. Last read position: chr10:22,328,620
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 731744 as yet unmatched pairs. 31945 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:28,611,886
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 729701 as yet unmatched pairs. 29897 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:32,271,691
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 728127 as yet unmatched pairs. 28317 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:37,832,638
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 725840 as yet unmatched pairs. 26019 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:45,374,335
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 723898 as yet unmatched pairs. 24070 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:46,379,871
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 722058 as yet unmatched pairs. 22226 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:58,820,408
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 720575 as yet unmatched pairs. 20732 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:70,217,917
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 718796 as yet unmatched pairs. 18944 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:73,796,788
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 716324 as yet unmatched pairs. 16464 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:79,306,194
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 714251 as yet unmatched pairs. 14380 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:86,968,592
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 714083 as yet unmatched pairs. 14204 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:93,359,917
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 710635 as yet unmatched pairs. 10756 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:97,884,277
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 708354 as yet unmatched pairs. 8475 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:102,705,364
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 705931 as yet unmatched pairs. 6035 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:115,207,847
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 703827 as yet unmatched pairs. 3912 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:125,836,682
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 701918 as yet unmatched pairs. 1997 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 2s. Last read position: chr11:294,306
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 699674 as yet unmatched pairs. 88607 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:763,910
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 697010 as yet unmatched pairs. 85937 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,639
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 695525 as yet unmatched pairs. 84448 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr11:1,837,263
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 692475 as yet unmatched pairs. 81398 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr11:3,725,166
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 689312 as yet unmatched pairs. 78228 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:7,825,590
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 687133 as yet unmatched pairs. 76048 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr11:9,724,771
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 684763 as yet unmatched pairs. 73675 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:11,948,499
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 682741 as yet unmatched pairs. 71652 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:17,119,825
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 680660 as yet unmatched pairs. 69567 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:32,953,774
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 678667 as yet unmatched pairs. 67572 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:35,186,832
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 676719 as yet unmatched pairs. 65620 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:46,543,299
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 674430 as yet unmatched pairs. 63329 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:57,308,776
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 672287 as yet unmatched pairs. 61186 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:57,816,307
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 671067 as yet unmatched pairs. 59962 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:60,386,750
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 668000 as yet unmatched pairs. 56892 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:61,964,834
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 669907 as yet unmatched pairs. 58767 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,556
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 664461 as yet unmatched pairs. 53321 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,662
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 663987 as yet unmatched pairs. 52845 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:62,787,426
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 660224 as yet unmatched pairs. 49076 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:64,246,425
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 658028 as yet unmatched pairs. 46878 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:64,911,153
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 655431 as yet unmatched pairs. 44276 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:65,429,378
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 652784 as yet unmatched pairs. 41628 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:65,659,757
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 651163 as yet unmatched pairs. 39983 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:66,475,787
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 647742 as yet unmatched pairs. 36559 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:67,351,901
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 645401 as yet unmatched pairs. 34217 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:68,048,979
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 643122 as yet unmatched pairs. 31938 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,268
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 642096 as yet unmatched pairs. 30908 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr11:70,422,984
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 638475 as yet unmatched pairs. 27285 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:72,111,170
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 635850 as yet unmatched pairs. 24654 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:75,400,693
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 635136 as yet unmatched pairs. 23940 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:78,443,680
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 631651 as yet unmatched pairs. 20451 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:93,738,478
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 629546 as yet unmatched pairs. 18343 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:102,368,458
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 627592 as yet unmatched pairs. 16386 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:114,252,281
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 625466 as yet unmatched pairs. 14249 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:118,401,645
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 624900 as yet unmatched pairs. 13683 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:119,015,860
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 622102 as yet unmatched pairs. 10885 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:120,225,672
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 619290 as yet unmatched pairs. 8072 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:123,058,749
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 617566 as yet unmatched pairs. 6347 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:125,605,714
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 614986 as yet unmatched pairs. 3767 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:130,122,368
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 612745 as yet unmatched pairs. 1521 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr12:885,784
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 610739 as yet unmatched pairs. 73783 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:6,318,830
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 608552 as yet unmatched pairs. 71595 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr12:6,583,027
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 606472 as yet unmatched pairs. 69513 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:6,965,569
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 604445 as yet unmatched pairs. 67486 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:10,713,231
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 602111 as yet unmatched pairs. 65152 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:14,787,098
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 599898 as yet unmatched pairs. 62927 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:22,457,105
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 597937 as yet unmatched pairs. 60966 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:32,740,408
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 595955 as yet unmatched pairs. 58981 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:46,364,505
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 597248 as yet unmatched pairs. 60265 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:48,845,574
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 591655 as yet unmatched pairs. 54672 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,916
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 590343 as yet unmatched pairs. 53359 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr12:50,181,963
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 588396 as yet unmatched pairs. 51412 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:52,238,700
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 587354 as yet unmatched pairs. 50367 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:53,016,561
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 583979 as yet unmatched pairs. 46990 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:53,459,304
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 581869 as yet unmatched pairs. 44876 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,786
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 579784 as yet unmatched pairs. 42786 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:55,990,004
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 577043 as yet unmatched pairs. 40044 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:56,161,392
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 577599 as yet unmatched pairs. 40596 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:56,643,473
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 573510 as yet unmatched pairs. 36506 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,098,560
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 572059 as yet unmatched pairs. 35054 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:57,209,747
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 568231 as yet unmatched pairs. 31226 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:57,846,542
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 566071 as yet unmatched pairs. 29061 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:68,657,132
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 564452 as yet unmatched pairs. 27441 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:76,031,048
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 562286 as yet unmatched pairs. 25275 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:93,399,262
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 560188 as yet unmatched pairs. 23168 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:101,761,246
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 558104 as yet unmatched pairs. 21081 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:108,547,902
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 556033 as yet unmatched pairs. 19009 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:111,362,910
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 554016 as yet unmatched pairs. 16992 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:112,911,089
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 552131 as yet unmatched pairs. 15106 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:114,680,874
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 549687 as yet unmatched pairs. 12658 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:120,170,292
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 547325 as yet unmatched pairs. 10288 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:120,716,663
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 544765 as yet unmatched pairs. 7728 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:122,867,413
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 542494 as yet unmatched pairs. 5454 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:124,912,371
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 540743 as yet unmatched pairs. 3700 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:132,714,906
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 538082 as yet unmatched pairs. 1031 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr13:20,067,270
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 536587 as yet unmatched pairs. 20174 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr13:24,890,168
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 534055 as yet unmatched pairs. 17638 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 2s. Last read position: chr13:32,209,001
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 532435 as yet unmatched pairs. 16017 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr13:41,868,415
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 530354 as yet unmatched pairs. 13918 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,717
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 533130 as yet unmatched pairs. 16686 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr13:49,518,113
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 526032 as yet unmatched pairs. 9583 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr13:76,593,379
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 523927 as yet unmatched pairs. 7469 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr13:97,976,744
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 522068 as yet unmatched pairs. 5589 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr13:102,862,472
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 519725 as yet unmatched pairs. 3242 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr13:113,321,555
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 517372 as yet unmatched pairs. 888 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr14:21,211,823
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 515579 as yet unmatched pairs. 39889 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr14:22,924,099
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 512858 as yet unmatched pairs. 37165 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr14:23,639,258
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 510834 as yet unmatched pairs. 35135 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr14:24,233,251
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 508459 as yet unmatched pairs. 32760 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:32,092,245
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 506389 as yet unmatched pairs. 30689 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr14:44,962,360
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 503838 as yet unmatched pairs. 28132 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:51,720,211
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 501806 as yet unmatched pairs. 26096 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr14:57,269,317
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 499789 as yet unmatched pairs. 24078 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr14:64,053,128
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 497542 as yet unmatched pairs. 21827 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:67,392,410
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 495344 as yet unmatched pairs. 19629 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:70,907,937
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 493197 as yet unmatched pairs. 17473 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:74,781,787
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 491333 as yet unmatched pairs. 15596 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr14:77,026,645
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 489037 as yet unmatched pairs. 13296 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:91,465,281
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 486634 as yet unmatched pairs. 10890 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr14:96,379,746
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 484631 as yet unmatched pairs. 8884 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:102,041,583
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 482636 as yet unmatched pairs. 6855 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:103,131,732
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 480648 as yet unmatched pairs. 4866 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:104,792,591
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 477527 as yet unmatched pairs. 1745 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr15:22,882,901
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 475544 as yet unmatched pairs. 59856 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr15:29,730,856
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 473651 as yet unmatched pairs. 57963 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr15:34,381,452
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 472840 as yet unmatched pairs. 57148 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr15:40,275,976
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 469888 as yet unmatched pairs. 54186 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr15:41,320,772
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 467437 as yet unmatched pairs. 51732 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr15:42,145,660
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 465378 as yet unmatched pairs. 49659 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr15:43,573,348
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 463507 as yet unmatched pairs. 47788 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,832
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 467752 as yet unmatched pairs. 52021 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr15:45,135,473
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 459368 as yet unmatched pairs. 43636 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr15:51,474,471
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 457294 as yet unmatched pairs. 41554 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr15:56,096,291
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 455201 as yet unmatched pairs. 39457 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr15:58,899,844
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 453015 as yet unmatched pairs. 37271 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr15:61,984,895
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 451393 as yet unmatched pairs. 35646 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr15:64,130,309
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 448787 as yet unmatched pairs. 33038 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr15:65,752,597
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 446532 as yet unmatched pairs. 30777 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:67,164,899
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 445321 as yet unmatched pairs. 29563 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr15:70,057,515
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 442085 as yet unmatched pairs. 26324 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr15:72,208,873
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 441827 as yet unmatched pairs. 26065 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr15:73,927,283
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 437539 as yet unmatched pairs. 21777 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:74,196,036
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 434957 as yet unmatched pairs. 19195 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:75,356,536
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 432810 as yet unmatched pairs. 17047 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:77,941,442
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 430088 as yet unmatched pairs. 14321 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr15:78,931,480
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 431233 as yet unmatched pairs. 15460 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:82,434,300
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 425984 as yet unmatched pairs. 10207 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:85,120,874
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 424281 as yet unmatched pairs. 8501 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr15:90,217,516
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 423015 as yet unmatched pairs. 7235 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:90,638,577
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 419676 as yet unmatched pairs. 3895 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr15:94,478,964
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 417542 as yet unmatched pairs. 1757 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr16:98,171
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 415386 as yet unmatched pairs. 64559 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:1,094,776
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 412588 as yet unmatched pairs. 61760 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:1,985,900
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 410036 as yet unmatched pairs. 59207 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,758,509
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 407996 as yet unmatched pairs. 57165 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr16:2,775,465
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 407121 as yet unmatched pairs. 56290 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:4,673,515
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 403363 as yet unmatched pairs. 52531 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr16:11,676,265
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 401051 as yet unmatched pairs. 50214 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:14,895,529
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 399505 as yet unmatched pairs. 48666 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:15,617,495
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 398387 as yet unmatched pairs. 47548 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:16,357,561
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 397781 as yet unmatched pairs. 46942 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:18,383,122
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 396834 as yet unmatched pairs. 45995 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:18,852,120
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 395180 as yet unmatched pairs. 44341 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,746
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 394446 as yet unmatched pairs. 43607 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,635
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 393193 as yet unmatched pairs. 42354 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,029
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 392290 as yet unmatched pairs. 41451 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:23,706,792
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 391219 as yet unmatched pairs. 40380 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:28,605,814
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 388612 as yet unmatched pairs. 37771 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:29,383,998
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 386815 as yet unmatched pairs. 35972 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:29,830,523
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 385614 as yet unmatched pairs. 34771 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,126
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 384359 as yet unmatched pairs. 33515 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:30,358,225
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 381827 as yet unmatched pairs. 30981 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:30,946,879
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 379607 as yet unmatched pairs. 28754 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:34,161,253
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 377138 as yet unmatched pairs. 26285 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:53,293,030
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 375254 as yet unmatched pairs. 24396 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:57,653,226
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 373300 as yet unmatched pairs. 22439 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:66,723,706
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 371306 as yet unmatched pairs. 20442 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:67,927,461
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 368458 as yet unmatched pairs. 17593 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:69,114,712
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 367013 as yet unmatched pairs. 16148 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:70,042,386
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 364035 as yet unmatched pairs. 13162 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr16:71,921,312
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 362017 as yet unmatched pairs. 11143 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:75,608,245
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 359634 as yet unmatched pairs. 8760 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:84,442,559
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 357729 as yet unmatched pairs. 6851 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,557
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 356955 as yet unmatched pairs. 6068 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,358
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 355307 as yet unmatched pairs. 4420 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr17:1,345,457
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 353491 as yet unmatched pairs. 107099 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:1,683,592
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 347866 as yet unmatched pairs. 101474 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:4,543,032
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 345431 as yet unmatched pairs. 99035 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:5,521,547
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 343183 as yet unmatched pairs. 96787 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr17:7,324,177
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 340845 as yet unmatched pairs. 94449 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr17:7,575,161
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 339082 as yet unmatched pairs. 92686 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr17:8,176,208
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 336670 as yet unmatched pairs. 90274 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,065
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 336385 as yet unmatched pairs. 89987 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:17,819,572
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 332472 as yet unmatched pairs. 86073 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:20,512,650
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 330096 as yet unmatched pairs. 83694 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:28,635,270
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 327986 as yet unmatched pairs. 81583 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 2s. Last read position: chr17:29,166,482
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 325949 as yet unmatched pairs. 79545 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:31,525,022
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 323815 as yet unmatched pairs. 77411 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:35,824,142
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 321992 as yet unmatched pairs. 75587 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:37,200,380
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 320564 as yet unmatched pairs. 74154 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:38,138,113
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 319893 as yet unmatched pairs. 73483 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:38,733,337
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 317890 as yet unmatched pairs. 71480 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:39,204,176
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 316687 as yet unmatched pairs. 70277 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:39,712,320
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 314160 as yet unmatched pairs. 67747 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 132s. Last read position: chr17:39,725,772
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 313610 as yet unmatched pairs. 67197 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:40,301,020
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 308842 as yet unmatched pairs. 62428 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr17:41,523,810
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 309379 as yet unmatched pairs. 62962 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr17:41,619,604
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 306773 as yet unmatched pairs. 60346 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr17:41,756,197
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 301707 as yet unmatched pairs. 55270 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr17:42,490,486
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 298896 as yet unmatched pairs. 52454 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr17:43,528,629
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 297093 as yet unmatched pairs. 50651 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 1s. Last read position: chr17:44,851,775
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 294347 as yet unmatched pairs. 47905 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:46,337,691
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 292490 as yet unmatched pairs. 46044 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr17:48,056,484
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 290629 as yet unmatched pairs. 44183 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,078,121
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 288811 as yet unmatched pairs. 42363 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,215
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 286646 as yet unmatched pairs. 40198 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,863,018
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 284269 as yet unmatched pairs. 37821 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:57,983,144
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 281386 as yet unmatched pairs. 34937 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr17:59,677,116
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 280522 as yet unmatched pairs. 34069 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr17:61,404,670
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 276917 as yet unmatched pairs. 30464 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:63,828,153
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 274521 as yet unmatched pairs. 28067 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:67,340,960
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 272568 as yet unmatched pairs. 26105 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr17:72,961,947
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 270473 as yet unmatched pairs. 24004 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:75,130,484
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 268168 as yet unmatched pairs. 21695 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:75,731,940
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 266141 as yet unmatched pairs. 19668 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr17:76,007,567
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 263428 as yet unmatched pairs. 16955 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,280
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 262189 as yet unmatched pairs. 15716 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr17:78,972,424
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 259106 as yet unmatched pairs. 12632 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:80,343,905
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 256582 as yet unmatched pairs. 10108 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,079
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 254789 as yet unmatched pairs. 8314 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr17:81,855,452
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 252094 as yet unmatched pairs. 5618 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,833
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 249159 as yet unmatched pairs. 2682 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr18:691,256
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 246384 as yet unmatched pairs. 13741 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr18:9,124,895
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 244615 as yet unmatched pairs. 11970 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr18:22,833,704
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 242369 as yet unmatched pairs. 9722 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr18:36,144,947
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 240559 as yet unmatched pairs. 7911 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr18:48,921,434
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 238397 as yet unmatched pairs. 5748 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr18:57,652,038
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 237872 as yet unmatched pairs. 5222 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr18:62,979,347
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 234288 as yet unmatched pairs. 1635 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 2s. Last read position: chr19:579,621
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 233244 as yet unmatched pairs. 102337 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:1,085,895
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 229333 as yet unmatched pairs. 98426 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,132
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 228992 as yet unmatched pairs. 98085 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 2s. Last read position: chr19:2,102,115
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 224041 as yet unmatched pairs. 93134 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 2s. Last read position: chr19:3,151,828
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 221548 as yet unmatched pairs. 90639 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr19:4,511,052
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 219034 as yet unmatched pairs. 88125 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:5,690,587
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 216987 as yet unmatched pairs. 86077 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:7,117,181
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 214097 as yet unmatched pairs. 83187 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:8,364,303
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 211546 as yet unmatched pairs. 80635 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:10,334,351
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 209136 as yet unmatched pairs. 78224 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr19:10,830,211
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 207197 as yet unmatched pairs. 76284 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:11,513,846
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 204421 as yet unmatched pairs. 73508 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:12,797,109
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 203014 as yet unmatched pairs. 72101 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:14,097,829
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 200102 as yet unmatched pairs. 69184 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:15,180,173
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 197737 as yet unmatched pairs. 66819 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:15,267,439
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 195762 as yet unmatched pairs. 64844 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:16,555,214
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 192841 as yet unmatched pairs. 61923 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:17,859,948
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 191105 as yet unmatched pairs. 60185 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr19:18,425,836
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 187731 as yet unmatched pairs. 56810 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:19,009,942
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 185249 as yet unmatched pairs. 54328 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:23,360,674
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 183125 as yet unmatched pairs. 52204 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:34,377,746
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 181160 as yet unmatched pairs. 50234 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:35,249,057
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 179450 as yet unmatched pairs. 48524 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:35,736,808
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 175857 as yet unmatched pairs. 44931 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:38,290,144
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 173898 as yet unmatched pairs. 42968 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:39,169,547
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 171359 as yet unmatched pairs. 40428 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:39,830,672
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 168956 as yet unmatched pairs. 38023 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:40,607,431
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 166670 as yet unmatched pairs. 35736 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:42,215,076
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 164259 as yet unmatched pairs. 33325 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:42,310,383
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 161870 as yet unmatched pairs. 30936 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:44,892,914
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 159616 as yet unmatched pairs. 28668 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:45,524,600
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 157629 as yet unmatched pairs. 26681 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:46,988,057
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 154716 as yet unmatched pairs. 23768 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,877
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 153174 as yet unmatched pairs. 22223 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:49,168,001
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 150111 as yet unmatched pairs. 19160 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 2s. Last read position: chr19:49,525,502
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 147999 as yet unmatched pairs. 17046 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,909,026
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 145038 as yet unmatched pairs. 14085 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:52,066,044
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 144260 as yet unmatched pairs. 13307 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:53,577,891
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 140772 as yet unmatched pairs. 9816 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:54,456,001
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 138691 as yet unmatched pairs. 7735 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:55,387,949
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 139423 as yet unmatched pairs. 8467 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:57,753,893
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 133548 as yet unmatched pairs. 2592 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:58,549,772
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 131913 as yet unmatched pairs. 953 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr20:2,864,327
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 129074 as yet unmatched pairs. 33415 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr20:6,096,983
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 126773 as yet unmatched pairs. 31114 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr20:20,032,587
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 124720 as yet unmatched pairs. 29060 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr20:25,676,436
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 122502 as yet unmatched pairs. 26842 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr20:34,105,426
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 120507 as yet unmatched pairs. 24847 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr20:35,618,654
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 117954 as yet unmatched pairs. 22294 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr20:37,301,276
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 115739 as yet unmatched pairs. 20079 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr20:43,460,551
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 113851 as yet unmatched pairs. 18190 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr20:45,641,245
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 111363 as yet unmatched pairs. 15702 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr20:48,974,831
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 109254 as yet unmatched pairs. 13593 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr20:53,575,797
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 107202 as yet unmatched pairs. 11540 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr20:58,903,713
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 105877 as yet unmatched pairs. 10203 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr20:62,313,776
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 102528 as yet unmatched pairs. 6853 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,194
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 99627 as yet unmatched pairs. 3952 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr20:63,733,305
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 96883 as yet unmatched pairs. 1207 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,072
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 94621 as yet unmatched pairs. 16028 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,124
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 93893 as yet unmatched pairs. 15292 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr21:15,489,339
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 92294 as yet unmatched pairs. 13689 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr21:31,685,675
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 90299 as yet unmatched pairs. 11694 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr21:33,750,242
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 88028 as yet unmatched pairs. 9422 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr21:38,299,948
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 85843 as yet unmatched pairs. 7237 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr21:41,745,782
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 83418 as yet unmatched pairs. 4812 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr21:44,227,228
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 81247 as yet unmatched pairs. 2641 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr21:46,557,633
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 78832 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr22:20,113,432
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 76511 as yet unmatched pairs. 35053 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr22:23,181,327
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 74530 as yet unmatched pairs. 33072 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr22:24,165,394
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 71662 as yet unmatched pairs. 30204 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr22:29,287,015
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 70308 as yet unmatched pairs. 28848 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr22:29,832,296
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 67163 as yet unmatched pairs. 25703 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr22:31,956,138
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 65048 as yet unmatched pairs. 23588 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr22:36,293,433
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 62851 as yet unmatched pairs. 21391 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr22:37,642,603
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 60595 as yet unmatched pairs. 19135 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr22:38,296,585
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 58082 as yet unmatched pairs. 16622 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,645
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 57869 as yet unmatched pairs. 16408 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr22:41,237,634
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 53403 as yet unmatched pairs. 11941 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr22:42,565,107
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 51076 as yet unmatched pairs. 9614 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr22:45,548,628
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 49623 as yet unmatched pairs. 8161 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr22:49,960,860
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 45908 as yet unmatched pairs. 4446 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr22:50,290,134
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 43687 as yet unmatched pairs. 2225 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chrX:1,601,367
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 40595 as yet unmatched pairs. 34182 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chrX:13,735,283
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 38446 as yet unmatched pairs. 32033 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chrX:37,840,628
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 36588 as yet unmatched pairs. 30158 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chrX:41,553,881
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 34430 as yet unmatched pairs. 28000 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chrX:47,239,069
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 32271 as yet unmatched pairs. 25840 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chrX:49,075,156
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 30001 as yet unmatched pairs. 23569 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chrX:53,552,680
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 27966 as yet unmatched pairs. 21534 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chrX:67,546,514
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 25806 as yet unmatched pairs. 19374 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chrX:71,559,369
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 24232 as yet unmatched pairs. 17800 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chrX:77,717,135
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 21989 as yet unmatched pairs. 15556 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chrX:101,411,997
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 19885 as yet unmatched pairs. 13452 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chrX:116,106,954
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 17598 as yet unmatched pairs. 11165 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chrX:130,014,625
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 15575 as yet unmatched pairs. 9142 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chrX:149,598,025
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 13530 as yet unmatched pairs. 7096 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chrX:153,769,244
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 11469 as yet unmatched pairs. 5035 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chrX:154,380,880
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 8798 as yet unmatched pairs. 2364 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chrX:156,007,535
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 6617 as yet unmatched pairs. 183 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,204
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 5052 as yet unmatched pairs. 2079 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,752
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 2975 as yet unmatched pairs. 2 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,140
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 84 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 641449350 records. 0 pairs never matched.
INFO 2026-06-08 08:51:46 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142232; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:51:46 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:51:49 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:51:49 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:52:02 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 08:52:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,532
INFO 2026-06-08 08:52:10 OpticalDuplicateFinder Large duplicate set. size = 1101
INFO 2026-06-08 08:52:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,675
INFO 2026-06-08 08:52:11 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 08:52:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,190
INFO 2026-06-08 08:52:13 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-08 08:52:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,432
INFO 2026-06-08 08:52:13 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 08:52:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,640
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder Large duplicate set. size = 1422
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,819
INFO 2026-06-08 08:52:21 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 08:52:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,926
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,869
INFO 2026-06-08 08:53:01 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 08:53:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,858
INFO 2026-06-08 08:53:01 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 08:53:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,187
INFO 2026-06-08 08:53:01 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 08:53:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,140
INFO 2026-06-08 08:53:01 OpticalDuplicateFinder Large duplicate set. size = 1478
INFO 2026-06-08 08:53:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,754
INFO 2026-06-08 08:53:18 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:53:18 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:54:19 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:54:24 MarkDuplicates After generateDuplicateIndexes freeMemory: 203978648; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:54:24 MarkDuplicates Marking 366762348 records as duplicates.
INFO 2026-06-08 08:54:24 MarkDuplicates Found 12378206 optical duplicate clusters.
INFO 2026-06-08 08:54:24 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:54:39 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:14s. Time for last 10,000,000: 14s. Last read position: chr1:21,428,688
INFO 2026-06-08 08:54:53 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:29s. Time for last 10,000,000: 14s. Last read position: chr1:39,461,984
INFO 2026-06-08 08:55:08 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:43s. Time for last 10,000,000: 14s. Last read position: chr1:89,058,038
INFO 2026-06-08 08:55:22 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:00:57s. Time for last 10,000,000: 14s. Last read position: chr1:148,866,760
INFO 2026-06-08 08:55:36 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:11s. Time for last 10,000,000: 14s. Last read position: chr1:160,419,550
INFO 2026-06-08 08:55:50 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:26s. Time for last 10,000,000: 14s. Last read position: chr1:212,051,490
INFO 2026-06-08 08:56:05 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:40s. Time for last 10,000,000: 14s. Last read position: chr2:27,204,816
INFO 2026-06-08 08:56:19 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:01:54s. Time for last 10,000,000: 14s. Last read position: chr2:61,248,660
INFO 2026-06-08 08:56:33 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:09s. Time for last 10,000,000: 14s. Last read position: chr2:112,575,627
INFO 2026-06-08 08:56:48 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:23s. Time for last 10,000,000: 14s. Last read position: chr2:206,159,934
INFO 2026-06-08 08:57:02 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:37s. Time for last 10,000,000: 14s. Last read position: chr3:12,590,838
INFO 2026-06-08 08:57:17 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:02:52s. Time for last 10,000,000: 14s. Last read position: chr3:49,357,702
INFO 2026-06-08 08:57:31 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:06s. Time for last 10,000,000: 14s. Last read position: chr3:127,017,475
INFO 2026-06-08 08:57:45 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:21s. Time for last 10,000,000: 14s. Last read position: chr3:195,784,964
INFO 2026-06-08 08:58:00 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:35s. Time for last 10,000,000: 14s. Last read position: chr4:41,613,642
INFO 2026-06-08 08:58:14 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:03:49s. Time for last 10,000,000: 14s. Last read position: chr4:165,333,433
INFO 2026-06-08 08:58:28 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 14s. Last read position: chr5:75,342,641
INFO 2026-06-08 08:58:44 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 15s. Last read position: chr5:147,828,026
INFO 2026-06-08 08:58:59 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 15s. Last read position: chr5:181,236,964
INFO 2026-06-08 08:59:15 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:04:50s. Time for last 10,000,000: 15s. Last read position: chr6:32,219,597
INFO 2026-06-08 08:59:29 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:04s. Time for last 10,000,000: 14s. Last read position: chr6:80,171,291
INFO 2026-06-08 08:59:43 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:18s. Time for last 10,000,000: 14s. Last read position: chr6:160,644,939
INFO 2026-06-08 08:59:58 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:33s. Time for last 10,000,000: 14s. Last read position: chr7:64,979,467
INFO 2026-06-08 09:00:12 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:05:47s. Time for last 10,000,000: 14s. Last read position: chr7:100,474,329
INFO 2026-06-08 09:00:26 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:02s. Time for last 10,000,000: 14s. Last read position: chr7:144,285,167
INFO 2026-06-08 09:00:41 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:16s. Time for last 10,000,000: 14s. Last read position: chr8:42,314,386
INFO 2026-06-08 09:00:55 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:30s. Time for last 10,000,000: 14s. Last read position: chr8:102,652,173
INFO 2026-06-08 09:01:09 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 14s. Last read position: chr8:143,863,005
INFO 2026-06-08 09:01:23 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 13s. Last read position: chr9:35,057,182
INFO 2026-06-08 09:01:38 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:13s. Time for last 10,000,000: 14s. Last read position: chr9:136,850,780
INFO 2026-06-08 09:01:52 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 14s. Last read position: chr10:46,379,871
INFO 2026-06-08 09:02:07 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 14s. Last read position: chr10:125,836,682
INFO 2026-06-08 09:02:21 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:07:56s. Time for last 10,000,000: 14s. Last read position: chr11:32,953,774
INFO 2026-06-08 09:02:35 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 14s. Last read position: chr11:64,246,425
INFO 2026-06-08 09:02:49 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:25s. Time for last 10,000,000: 14s. Last read position: chr11:75,400,693
INFO 2026-06-08 09:03:04 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 14s. Last read position: chr11:130,122,368
INFO 2026-06-08 09:03:18 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:08:53s. Time for last 10,000,000: 14s. Last read position: chr12:48,845,574
INFO 2026-06-08 09:03:32 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 14s. Last read position: chr12:57,098,560
INFO 2026-06-08 09:03:47 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 14s. Last read position: chr12:114,680,874
INFO 2026-06-08 09:04:01 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:09:36s. Time for last 10,000,000: 14s. Last read position: chr13:45,340,717
INFO 2026-06-08 09:04:15 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:09:51s. Time for last 10,000,000: 14s. Last read position: chr14:32,092,245
INFO 2026-06-08 09:04:30 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 14s. Last read position: chr14:96,379,746
INFO 2026-06-08 09:04:44 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 14s. Last read position: chr15:43,573,348
INFO 2026-06-08 09:04:58 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:10:34s. Time for last 10,000,000: 14s. Last read position: chr15:70,057,515
INFO 2026-06-08 09:05:13 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:10:48s. Time for last 10,000,000: 14s. Last read position: chr15:90,638,577
INFO 2026-06-08 09:05:27 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:02s. Time for last 10,000,000: 14s. Last read position: chr16:15,617,495
INFO 2026-06-08 09:05:41 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:16s. Time for last 10,000,000: 14s. Last read position: chr16:29,830,523
INFO 2026-06-08 09:05:55 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:11:31s. Time for last 10,000,000: 14s. Last read position: chr16:70,042,386
INFO 2026-06-08 09:06:09 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:11:45s. Time for last 10,000,000: 14s. Last read position: chr17:7,324,177
INFO 2026-06-08 09:06:24 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:11:59s. Time for last 10,000,000: 14s. Last read position: chr17:37,200,380
INFO 2026-06-08 09:06:38 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:13s. Time for last 10,000,000: 14s. Last read position: chr17:42,490,486
INFO 2026-06-08 09:06:52 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:12:28s. Time for last 10,000,000: 14s. Last read position: chr17:61,404,670
INFO 2026-06-08 09:07:07 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 14s. Last read position: chr17:81,511,079
INFO 2026-06-08 09:07:21 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:12:56s. Time for last 10,000,000: 14s. Last read position: chr19:579,621
INFO 2026-06-08 09:07:35 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 14s. Last read position: chr19:10,830,211
INFO 2026-06-08 09:07:49 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:13:24s. Time for last 10,000,000: 14s. Last read position: chr19:23,360,674
INFO 2026-06-08 09:08:03 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:13:39s. Time for last 10,000,000: 14s. Last read position: chr19:44,892,914
INFO 2026-06-08 09:08:18 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 14s. Last read position: chr19:55,387,949
INFO 2026-06-08 09:08:32 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:14:07s. Time for last 10,000,000: 14s. Last read position: chr20:43,460,551
INFO 2026-06-08 09:08:46 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:14:21s. Time for last 10,000,000: 13s. Last read position: chr21:15,489,339
INFO 2026-06-08 09:09:00 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:14:35s. Time for last 10,000,000: 14s. Last read position: chr22:29,287,015
INFO 2026-06-08 09:09:14 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:14:49s. Time for last 10,000,000: 14s. Last read position: chr22:49,960,860
INFO 2026-06-08 09:09:28 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:15:03s. Time for last 10,000,000: 14s. Last read position: chrX:71,559,369
INFO 2026-06-08 09:09:42 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:15:17s. Time for last 10,000,000: 13s. Last read position: GL000220.1:160,752
INFO 2026-06-08 09:09:51 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:09:51 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:09:51 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:09:51 MarkDuplicates Before output close freeMemory: 203943040; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:09:51 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:09:51 MarkDuplicates After output close freeMemory: 104185160; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:09:51 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 39.09 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory