Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/2abf8629e46df45072d2bc27d2c722/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/c4b09cd751fbc6cbcce7238ec40f4a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/c4b09cd751fbc6cbcce7238ec40f4a/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 279000000 records
Processed 280000000 records
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paired = 161649344
unpaired = 3264555
MERGED PAIRED END READS = 161649344
MATES PROCESSED = 326563243
TOTAL READS     = 164913899
DISTINCT READS  = 2.21628e+07
DISTINCT COUNTS = 739
MAX COUNT       = 713687
COUNTS OF 1     = 4.58359e+06
MAX TERMS       = 100
OBSERVED COUNTS (713688)
1	4583586
2	2269243
3	1850192
4	1648604
5	1484638
6	1329692
7	1183585
8	1045092
9	919307
10	801073
11	693672
12	597408
13	514149
14	439649
15	375296
16	320319
17	273077
18	231718
19	198403
20	168250
21	143889
22	123927
23	106714
24	90833
25	78586
26	68142
27	59738
28	51973
29	45566
30	40136
31	35428
32	31575
33	27936
34	25089
35	22619
36	20499
37	18462
38	16786
39	15414
40	14066
41	12909
42	11928
43	10850
44	10037
45	9442
46	8761
47	7968
48	7487
49	6832
50	6450
51	6045
52	5488
53	5309
54	4797
55	4558
56	4265
57	4025
58	3751
59	3429
60	3249
61	2969
62	2780
63	2673
64	2432
65	2342
66	2165
67	2035
68	1894
69	1757
70	1644
71	1446
72	1417
73	1357
74	1297
75	1211
76	1125
77	950
78	991
79	965
80	928
81	837
82	839
83	729
84	721
85	633
86	614
87	590
88	587
89	509
90	568
91	546
92	488
93	507
94	457
95	421
96	444
97	426
98	391
99	380
100	367
101	319
102	372
103	356
104	354
105	340
106	309
107	268
108	287
109	311
110	298
111	257
112	240
113	246
114	241
115	242
116	241
117	215
118	206
119	229
120	193
121	200
122	203
123	180
124	170
125	163
126	176
127	171
128	154
129	180
130	157
131	156
132	152
133	142
134	133
135	124
136	134
137	105
138	129
139	99
140	123
141	113
142	111
143	103
144	109
145	95
146	103
147	110
148	96
149	114
150	116
151	86
152	79
153	92
154	70
155	75
156	74
157	72
158	89
159	76
160	89
161	72
162	70
163	57
164	81
165	78
166	71
167	47
168	53
169	72
170	46
171	47
172	63
173	67
174	51
175	52
176	53
177	56
178	58
179	43
180	43
181	59
182	50
183	46
184	40
185	50
186	46
187	42
188	44
189	46
190	46
191	38
192	34
193	36
194	34
195	31
196	35
197	33
198	43
199	35
200	29
201	35
202	41
203	33
204	24
205	41
206	35
207	28
208	35
209	18
210	35
211	43
212	34
213	27
214	31
215	26
216	31
217	27
218	27
219	33
220	27
221	34
222	25
223	23
224	25
225	20
226	29
227	20
228	20
229	29
230	23
231	21
232	19
233	16
234	24
235	21
236	21
237	17
238	16
239	22
240	19
241	20
242	21
243	16
244	17
245	10
246	20
247	18
248	15
249	19
250	11
251	12
252	14
253	16
254	10
255	11
256	14
257	20
258	26
259	13
260	18
261	15
262	15
263	12
264	8
265	10
266	18
267	18
268	13
269	10
270	11
271	20
272	11
273	15
274	20
275	10
276	15
277	9
278	13
279	10
280	12
281	15
282	12
283	12
284	10
285	16
286	11
287	12
288	17
289	17
290	7
291	9
292	9
293	8
294	8
295	12
296	6
297	13
298	9
299	9
300	5
301	5
302	7
303	9
304	9
305	8
306	5
307	10
308	8
309	15
310	6
311	6
312	8
313	10
314	6
315	7
316	6
317	7
318	4
319	4
320	5
321	2
322	6
323	7
324	4
325	10
326	7
327	3
328	14
329	7
330	6
331	7
332	4
334	9
335	6
336	6
337	7
338	6
339	6
340	7
341	3
342	7
343	9
344	7
345	5
346	8
347	6
348	8
349	5
350	6
351	6
352	7
353	3
354	4
355	5
356	7
357	9
358	5
359	10
360	7
361	3
362	5
363	6
364	3
365	5
366	9
367	4
368	7
369	9
370	3
371	3
372	5
373	4
374	3
375	7
376	1
377	2
378	1
379	3
380	3
381	4
382	4
383	7
384	4
385	4
386	1
387	5
388	7
389	5
390	4
391	5
392	1
393	1
394	4
395	4
396	4
397	1
398	1
399	1
400	5
401	2
402	3
403	4
404	3
405	5
406	5
407	2
408	7
409	2
410	2
411	3
413	2
414	6
415	4
416	4
418	5
419	2
420	5
421	3
422	4
424	4
425	3
427	1
428	1
430	5
431	3
432	1
433	5
434	4
435	1
436	6
437	1
438	1
439	2
440	1
441	1
442	3
443	3
444	5
445	1
446	2
447	3
448	2
449	1
450	2
451	1
452	1
453	3
454	2
455	1
456	1
457	2
458	3
459	3
460	2
461	2
462	4
463	1
464	3
465	4
466	2
468	1
469	2
470	3
471	2
472	3
473	1
474	3
475	3
476	2
477	3
478	4
479	4
480	4
481	2
482	4
485	2
486	1
488	2
489	4
490	3
491	2
492	4
493	3
494	1
495	1
497	3
498	3
499	1
500	2
501	1
502	1
503	3
504	1
506	1
507	1
508	3
509	1
510	2
511	1
512	2
513	2
514	2
515	1
517	2
518	1
519	2
520	4
521	2
522	1
523	1
524	1
525	2
527	3
531	2
532	2
535	3
536	2
537	2
539	2
540	2
542	2
544	2
545	2
546	4
547	3
548	1
551	2
554	1
555	4
556	2
557	1
558	1
559	3
560	1
566	1
567	3
569	1
572	2
575	1
576	1
580	1
581	2
582	2
585	1
586	1
587	1
591	1
595	1
596	1
598	2
601	2
602	1
603	1
604	1
606	1
607	1
608	1
609	1
610	2
613	2
614	1
615	1
616	1
618	2
622	2
625	2
628	1
629	2
633	1
636	1
641	2
645	1
646	1
647	1
654	2
656	1
660	1
661	1
663	2
664	3
665	1
669	3
674	2
676	1
685	1
691	1
692	1
694	1
695	1
696	1
698	2
703	1
712	1
713	1
716	1
718	1
719	1
720	1
723	1
732	1
738	1
741	1
744	1
753	1
755	1
758	2
759	1
763	1
767	1
768	2
776	1
783	2
785	1
790	1
792	1
793	2
798	1
799	1
801	1
803	1
809	2
814	1
815	1
822	3
828	1
831	1
834	1
835	1
836	1
838	1
840	1
842	1
858	1
861	1
864	1
870	1
871	1
872	1
873	1
875	1
876	2
882	3
898	1
901	1
902	1
907	2
919	1
920	1
923	1
925	2
929	1
930	1
941	1
949	1
950	1
952	1
956	1
958	1
962	1
969	1
974	1
975	1
987	1
994	2
995	1
1000	1
1009	1
1010	1
1011	1
1012	1
1013	1
1015	1
1016	1
1024	1
1025	2
1034	1
1044	1
1064	1
1082	2
1085	1
1086	1
1092	1
1108	1
1115	1
1119	1
1122	1
1123	1
1131	2
1143	1
1151	1
1155	1
1174	1
1176	1
1188	1
1201	1
1224	1
1251	1
1253	1
1263	1
1269	1
1295	1
1309	1
1319	1
1353	1
1355	1
1387	1
1431	1
1445	1
1454	1
1477	1
1501	1
1520	1
1521	1
1530	1
1565	1
1591	1
1600	1
1638	1
1649	1
1660	1
1663	1
1675	1
1685	1
1701	1
1710	1
1767	1
1866	1
1876	1
2077	1
2108	1
2171	1
2419	1
2465	1
2927	1
3940	1
4895	1
7138	1
21626	1
713687	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._..__........_.__........_.....__.___._._....._....._....._...._.._....
........_...__.__...__.._......_...........__....._._._......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]