#!/bin/bash -euo pipefail
cat BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L001_R1_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L002_R1_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L003_R1_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L004_R1_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L005_R1_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L006_R1_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L007_R1_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L008_R1_001.fastq.gz > BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_R1.fastq.gz
cat BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L001_R2_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L002_R2_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L003_R2_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L004_R2_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L005_R2_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L006_R2_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L007_R2_001.fastq.gz BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_S68_L008_R2_001.fastq.gz > BVT_FFPE_TRNA_stm_04_A23WKFTLT4_3_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS