Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/26b9dfb09973b90ca8c27d9b1742c8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/17ffbb45bc9682121479433501ae8c/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/26b9dfb09973b90ca8c27d9b1742c8/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 279000000 records
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Processed 349000000 records
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paired = 200130559
unpaired = 4236138
MERGED PAIRED END READS = 200130559
MATES PROCESSED = 404497256
TOTAL READS     = 204366697
DISTINCT READS  = 5.56907e+07
DISTINCT COUNTS = 1184
MAX COUNT       = 751927
COUNTS OF 1     = 1.76475e+07
MAX TERMS       = 100
OBSERVED COUNTS (751928)
1	17647534
2	11244103
3	7925977
4	5547183
5	3837623
6	2634782
7	1809004
8	1251157
9	877972
10	622853
11	452029
12	334167
13	252703
14	195202
15	153541
16	122416
17	98863
18	81299
19	67177
20	56527
21	47653
22	40678
23	34610
24	30006
25	26419
26	22789
27	19904
28	17240
29	15592
30	13813
31	12640
32	11036
33	10252
34	9386
35	8564
36	7668
37	7170
38	6580
39	6260
40	5693
41	5404
42	4852
43	4485
44	4220
45	3958
46	3891
47	3574
48	3406
49	3140
50	3025
51	2959
52	2735
53	2427
54	2480
55	2219
56	2083
57	2072
58	1892
59	1919
60	1809
61	1668
62	1617
63	1605
64	1494
65	1467
66	1373
67	1356
68	1186
69	1220
70	1174
71	1099
72	1021
73	999
74	1022
75	976
76	978
77	942
78	849
79	864
80	873
81	759
82	760
83	711
84	754
85	685
86	644
87	697
88	657
89	602
90	583
91	579
92	575
93	531
94	586
95	531
96	492
97	490
98	462
99	491
100	463
101	484
102	405
103	398
104	400
105	407
106	402
107	380
108	363
109	361
110	359
111	351
112	352
113	317
114	353
115	324
116	308
117	295
118	287
119	296
120	301
121	261
122	281
123	269
124	274
125	210
126	228
127	247
128	246
129	219
130	216
131	219
132	201
133	204
134	192
135	199
136	189
137	188
138	176
139	207
140	209
141	183
142	181
143	168
144	158
145	186
146	172
147	178
148	146
149	155
150	165
151	140
152	150
153	150
154	139
155	141
156	126
157	156
158	126
159	121
160	137
161	135
162	120
163	121
164	128
165	115
166	111
167	107
168	107
169	108
170	113
171	117
172	94
173	106
174	104
175	96
176	100
177	106
178	111
179	95
180	92
181	84
182	100
183	90
184	79
185	100
186	85
187	88
188	80
189	93
190	69
191	93
192	79
193	86
194	81
195	71
196	70
197	75
198	81
199	70
200	61
201	71
202	64
203	72
204	86
205	74
206	58
207	68
208	61
209	54
210	57
211	58
212	49
213	62
214	55
215	55
216	46
217	64
218	46
219	60
220	52
221	57
222	52
223	43
224	66
225	44
226	49
227	50
228	48
229	51
230	52
231	44
232	39
233	57
234	50
235	39
236	45
237	45
238	39
239	49
240	48
241	46
242	35
243	47
244	49
245	46
246	36
247	37
248	45
249	54
250	33
251	32
252	57
253	32
254	32
255	38
256	38
257	40
258	29
259	39
260	25
261	35
262	28
263	33
264	34
265	37
266	36
267	32
268	43
269	35
270	41
271	30
272	23
273	34
274	33
275	28
276	29
277	36
278	40
279	34
280	28
281	29
282	31
283	19
284	36
285	23
286	17
287	15
288	22
289	31
290	23
291	20
292	26
293	22
294	37
295	20
296	26
297	31
298	20
299	30
300	24
301	21
302	29
303	22
304	29
305	18
306	22
307	25
308	22
309	16
310	28
311	25
312	13
313	16
314	25
315	15
316	12
317	18
318	14
319	26
320	24
321	20
322	18
323	15
324	25
325	24
326	22
327	8
328	18
329	17
330	24
331	13
332	25
333	17
334	9
335	12
336	23
337	25
338	18
339	12
340	25
341	5
342	13
343	11
344	9
345	15
346	13
347	18
348	18
349	21
350	11
351	14
352	10
353	21
354	14
355	19
356	16
357	10
358	20
359	23
360	13
361	10
362	16
363	12
364	13
365	13
366	8
367	12
368	13
369	11
370	7
371	13
372	13
373	13
374	10
375	10
376	12
377	15
378	14
379	10
380	14
381	10
382	5
383	12
384	13
385	6
386	15
387	9
388	7
389	10
390	15
391	16
392	12
393	11
394	14
395	14
396	9
397	8
398	12
399	10
400	7
401	12
402	15
403	8
404	14
405	7
406	9
407	9
408	18
409	7
410	9
411	11
412	6
413	12
414	4
415	15
416	10
417	11
418	12
419	10
420	9
421	16
422	7
423	11
424	8
425	5
426	9
427	6
428	9
429	12
430	7
431	5
432	8
433	8
434	4
435	10
436	7
437	10
438	13
439	5
440	7
441	6
442	11
443	6
444	9
445	5
446	6
447	8
448	9
449	8
450	9
451	5
452	8
453	5
454	5
455	7
456	6
457	4
458	6
459	6
460	10
461	3
462	7
463	14
464	8
465	6
466	8
467	8
468	6
469	7
470	5
471	8
472	7
473	11
474	8
475	3
476	8
477	4
478	6
479	6
480	5
481	4
482	3
483	6
484	9
485	9
486	7
487	6
488	4
489	7
490	8
491	5
492	7
493	6
494	4
495	4
496	8
497	7
498	4
499	4
500	6
501	6
502	6
503	3
504	6
505	7
506	5
507	5
508	3
509	8
510	6
511	3
512	5
513	2
514	2
515	7
516	7
517	7
518	8
519	5
520	6
521	5
522	3
523	5
524	2
525	6
526	3
527	4
528	3
529	10
530	4
531	8
532	4
533	6
534	6
535	1
536	2
537	1
538	6
539	3
540	6
541	1
542	3
543	7
544	8
545	3
546	2
547	7
548	4
549	3
550	4
551	5
552	3
553	7
554	5
556	2
557	3
558	5
559	1
560	6
561	5
562	3
563	1
564	3
565	2
566	4
567	5
568	4
569	4
570	4
571	3
572	2
573	8
574	4
575	10
576	4
577	3
578	3
579	7
580	6
582	5
583	1
584	4
585	5
586	2
587	5
588	3
589	4
590	4
591	5
592	1
593	2
594	4
595	4
596	4
597	2
598	1
599	3
600	6
601	2
602	5
603	6
604	4
606	5
607	4
608	1
609	1
610	3
611	4
612	2
613	1
614	1
615	3
616	6
617	6
618	1
619	5
620	1
621	5
622	6
623	4
624	2
625	5
626	1
627	2
628	2
629	1
630	1
631	2
632	5
633	2
634	3
636	5
637	3
638	2
639	2
641	4
642	3
643	4
644	4
645	5
647	2
648	2
650	2
651	1
652	2
653	1
654	4
656	1
657	5
658	4
659	3
660	1
661	3
662	2
663	7
664	1
665	2
666	1
667	4
668	1
669	3
670	2
671	3
672	2
674	2
676	1
677	2
678	1
680	1
681	2
682	2
683	3
684	1
685	2
686	1
687	2
688	2
689	3
690	2
691	2
692	2
693	3
694	2
695	2
696	6
697	3
698	1
699	3
700	4
701	2
702	3
703	3
704	1
705	2
706	1
707	2
708	1
709	3
710	2
711	4
712	2
713	3
715	4
716	1
717	3
718	1
719	2
720	1
721	3
723	3
724	1
725	1
726	2
727	1
728	3
729	1
730	1
732	2
733	3
734	1
735	1
738	1
741	2
742	2
744	1
745	1
746	1
747	2
749	2
751	1
752	2
754	3
755	3
756	2
757	2
758	3
759	1
762	1
763	2
764	1
765	2
766	2
768	3
769	4
774	2
775	3
776	1
778	3
779	2
780	3
781	1
782	1
784	1
785	1
788	1
789	1
790	3
791	2
792	2
793	1
795	1
796	3
797	4
798	2
799	4
800	1
801	3
802	1
803	1
804	1
805	1
806	2
807	1
808	3
809	2
810	1
812	3
815	1
816	3
817	2
819	1
822	1
823	1
827	1
828	1
829	3
830	1
831	2
837	1
839	2
840	1
842	1
843	1
844	1
845	2
848	3
849	3
850	2
852	2
856	1
857	2
858	1
859	2
860	1
861	1
863	1
866	1
870	1
871	2
873	1
875	1
876	2
877	1
880	1
883	1
884	1
886	1
887	1
888	3
889	1
890	1
892	1
893	1
894	2
895	3
898	1
900	2
901	1
902	2
903	1
904	1
905	2
906	2
907	2
909	1
911	1
912	2
913	3
914	1
915	1
917	2
918	1
921	1
922	1
923	1
925	1
926	2
928	1
930	3
931	2
936	1
938	1
939	2
944	1
945	2
947	2
948	1
949	4
950	1
951	2
955	1
956	2
959	2
960	2
961	1
963	1
966	1
968	2
969	1
970	1
971	1
973	2
974	3
976	1
977	2
978	2
980	1
981	2
983	1
986	1
988	1
993	1
994	1
995	1
996	1
1000	1
1001	1
1002	1
1003	1
1004	1
1006	1
1007	1
1008	1
1009	1
1011	2
1014	1
1017	1
1018	2
1020	1
1021	1
1022	3
1024	2
1025	1
1026	1
1028	1
1030	1
1032	4
1034	1
1035	1
1040	2
1041	1
1044	1
1046	1
1047	3
1049	1
1050	1
1054	1
1056	2
1059	2
1060	1
1062	1
1063	1
1065	3
1067	1
1068	1
1069	1
1071	1
1072	2
1076	1
1077	1
1078	1
1080	2
1081	1
1083	1
1084	1
1086	1
1087	2
1088	1
1091	1
1095	2
1096	1
1097	1
1099	2
1106	1
1108	1
1110	2
1111	1
1113	1
1114	1
1116	2
1117	1
1121	1
1123	2
1124	1
1125	2
1126	2
1127	1
1129	2
1133	1
1135	1
1137	1
1139	4
1140	1
1144	2
1146	2
1149	2
1150	1
1155	1
1158	1
1160	1
1165	1
1166	1
1167	1
1168	1
1169	1
1170	2
1172	1
1176	2
1177	1
1178	1
1179	1
1182	2
1185	1
1187	1
1190	1
1193	1
1199	1
1200	1
1201	1
1202	1
1206	1
1208	1
1210	1
1213	1
1216	1
1219	3
1222	2
1225	1
1227	1
1228	1
1229	2
1233	1
1238	2
1245	1
1247	1
1248	1
1263	1
1265	1
1266	1
1269	2
1275	1
1276	1
1280	1
1283	1
1286	1
1290	1
1291	2
1294	1
1298	1
1299	1
1301	1
1303	1
1304	1
1308	2
1311	2
1316	1
1319	2
1321	1
1322	1
1324	2
1325	1
1331	1
1333	1
1341	1
1342	1
1343	1
1345	1
1347	1
1351	1
1352	1
1353	1
1354	1
1361	1
1365	2
1367	1
1369	1
1370	1
1373	1
1374	2
1382	2
1383	1
1386	1
1387	1
1388	1
1393	1
1394	1
1403	1
1406	1
1414	1
1418	2
1421	1
1423	2
1427	1
1432	1
1438	1
1441	1
1443	1
1444	1
1449	1
1451	1
1454	1
1459	1
1467	2
1485	1
1486	2
1497	1
1498	2
1508	1
1509	3
1519	1
1523	1
1524	1
1525	1
1526	1
1529	1
1531	1
1532	1
1534	1
1551	1
1552	1
1567	1
1569	1
1573	1
1581	1
1595	1
1621	1
1623	1
1624	1
1625	1
1629	1
1632	1
1660	1
1668	1
1692	1
1703	1
1705	1
1710	1
1724	1
1742	1
1746	1
1751	1
1754	2
1758	1
1777	1
1795	1
1801	1
1803	1
1806	1
1810	1
1825	1
1865	1
1877	1
1881	1
1911	1
1928	1
1934	1
1938	1
1941	1
1958	1
1970	1
1974	1
1986	1
1995	1
2003	1
2012	1
2027	1
2031	1
2041	1
2064	1
2083	1
2112	1
2113	1
2154	1
2183	1
2202	1
2217	1
2246	1
2289	1
2292	1
2356	1
2371	1
2383	1
2445	1
2502	1
2558	1
2563	1
2591	1
2621	1
2679	1
2704	1
2736	1
2752	1
2753	1
2773	1
2912	1
3017	1
3142	1
3258	1
3579	1
4023	1
4047	1
4054	1
4272	1
4309	1
4492	1
4638	1
4688	1
5813	1
6037	1
6470	1
9208	1
9339	1
17712	1
751927	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........_..__........_._............._......._........._.._...._......._
................_..._....__........_....._...
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]