Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/6566176b2401167f9338185f4f94ef/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/6566176b2401167f9338185f4f94ef/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/aadfd18b39aa261c1f27b3128eceb7/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/1c5f2a85dd76803805b4403edd609b/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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