Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/af15205b816de8ba91fc11855d08b8/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/8a99b323e6f0a66af4ee67993d9d7a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/8a99b323e6f0a66af4ee67993d9d7a/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
paired = 82154638
unpaired = 2038980
MERGED PAIRED END READS = 82154638
MATES PROCESSED = 166348256
TOTAL READS = 84193618
DISTINCT READS = 1.32514e+07
DISTINCT COUNTS = 548
MAX COUNT = 399475
COUNTS OF 1 = 2.88353e+06
MAX TERMS = 100
OBSERVED COUNTS (399476)
1 2883528
2 1565506
3 1274469
4 1110139
5 972542
6 841384
7 723676
8 617252
9 523323
10 438858
11 367548
12 306028
13 254553
14 211126
15 174222
16 144464
17 120183
18 99321
19 83548
20 69126
21 58310
22 48889
23 41827
24 35555
25 30123
26 26339
27 22609
28 19781
29 17125
30 15311
31 13513
32 11939
33 10747
34 9797
35 8745
36 7830
37 7089
38 6520
39 5771
40 5244
41 4920
42 4611
43 4122
44 3799
45 3419
46 3179
47 2856
48 2820
49 2472
50 2228
51 2110
52 2074
53 1868
54 1710
55 1600
56 1453
57 1294
58 1250
59 1104
60 1094
61 1021
62 926
63 808
64 835
65 729
66 695
67 605
68 588
69 525
70 494
71 466
72 415
73 413
74 367
75 354
76 301
77 335
78 291
79 267
80 243
81 235
82 220
83 201
84 205
85 187
86 181
87 189
88 144
89 174
90 162
91 141
92 159
93 143
94 145
95 125
96 106
97 113
98 106
99 113
100 111
101 95
102 100
103 84
104 89
105 78
106 87
107 74
108 90
109 74
110 76
111 65
112 67
113 71
114 59
115 49
116 67
117 68
118 44
119 60
120 47
121 69
122 37
123 38
124 37
125 47
126 40
127 47
128 45
129 35
130 37
131 37
132 39
133 33
134 28
135 35
136 36
137 29
138 29
139 36
140 24
141 27
142 27
143 36
144 25
145 23
146 28
147 19
148 17
149 22
150 15
151 22
152 15
153 14
154 15
155 17
156 24
157 11
158 12
159 15
160 13
161 9
162 14
163 17
164 27
165 11
166 15
167 13
168 14
169 13
170 10
171 13
172 15
173 8
174 7
175 13
176 10
177 14
178 12
179 8
180 9
181 15
182 12
183 11
184 6
185 11
186 6
187 7
188 6
189 12
190 8
191 10
192 9
193 8
194 10
195 6
196 13
197 11
198 6
199 6
200 8
201 3
202 9
203 4
204 5
205 14
206 4
207 8
208 7
209 6
210 9
211 6
212 1
213 8
214 4
215 9
216 8
217 7
218 1
219 8
220 6
221 7
222 4
223 6
224 8
225 5
226 7
227 6
228 5
229 3
230 4
231 2
232 3
233 1
234 8
235 8
236 4
237 4
238 4
239 3
240 2
241 2
242 6
243 6
244 2
245 2
246 3
247 8
248 2
249 2
250 2
251 1
252 5
253 3
254 2
255 4
256 1
257 1
258 2
259 2
260 4
261 3
262 2
263 2
264 1
265 3
266 4
268 2
269 1
270 3
271 3
272 7
273 3
274 2
275 4
276 3
277 1
278 2
279 2
280 1
281 2
283 1
284 1
285 6
286 1
287 2
288 2
289 1
290 2
292 4
296 1
297 2
299 2
300 1
301 1
302 4
303 3
304 1
305 1
306 3
307 1
308 1
309 1
310 1
311 1
312 1
313 1
315 1
316 2
317 3
318 2
319 5
320 1
321 3
323 1
324 1
325 1
328 2
329 2
330 2
331 1
332 1
333 2
334 1
335 2
337 1
338 3
340 1
341 3
342 1
343 1
344 1
345 3
346 1
347 3
348 1
349 1
353 2
354 1
355 1
357 1
358 1
359 2
360 1
362 3
364 1
365 3
367 1
368 1
369 2
371 1
373 2
375 1
376 2
377 1
381 1
382 1
385 2
386 2
388 3
390 3
391 1
393 1
395 2
398 1
399 1
400 1
402 1
403 1
404 2
407 2
408 1
409 1
410 1
411 2
413 1
414 1
415 3
416 1
417 1
418 4
419 1
421 2
422 1
423 1
424 2
425 2
426 1
428 2
430 1
434 1
435 1
436 2
437 3
438 1
439 1
440 1
442 1
443 6
445 2
447 3
448 3
451 1
452 1
454 2
455 1
456 1
457 1
464 1
465 1
467 1
471 2
473 2
476 1
479 2
482 1
486 1
488 1
489 1
490 1
492 1
495 1
498 1
499 1
502 1
503 2
504 2
507 2
509 1
511 1
512 1
516 1
517 1
518 1
526 2
531 1
537 2
542 1
543 1
547 1
552 1
554 1
557 3
559 1
561 1
562 1
563 1
566 1
567 1
569 1
574 1
577 1
578 1
579 2
582 1
584 1
586 1
587 2
588 3
592 1
596 1
599 1
605 1
606 1
608 3
610 1
611 1
616 1
617 1
624 1
627 1
629 1
644 1
649 1
651 1
652 1
661 1
666 1
667 1
691 1
694 1
700 1
701 1
708 1
712 1
713 1
716 1
718 1
746 1
754 1
756 1
760 2
762 1
772 2
773 1
784 2
785 1
789 1
797 1
803 1
810 1
815 1
820 1
822 1
824 1
826 1
836 1
871 1
879 1
903 1
908 1
910 1
911 1
932 1
945 1
948 1
949 1
965 1
978 1
1006 1
1007 1
1086 1
1088 1
1112 1
1145 1
1148 2
1149 1
1156 1
1247 1
1336 1
1337 1
1368 1
1386 1
1568 1
1617 1
1673 1
1676 1
1714 1
1789 1
2041 1
2317 1
2664 1
2900 1
3033 1
3615 1
3912 1
6849 1
12408 1
399475 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.........._......._...__............_.......__._..._....................
..........................._.._........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]