Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/af15205b816de8ba91fc11855d08b8/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/8a99b323e6f0a66af4ee67993d9d7a/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/8a99b323e6f0a66af4ee67993d9d7a/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records paired = 82154638 unpaired = 2038980 MERGED PAIRED END READS = 82154638 MATES PROCESSED = 166348256 TOTAL READS = 84193618 DISTINCT READS = 1.32514e+07 DISTINCT COUNTS = 548 MAX COUNT = 399475 COUNTS OF 1 = 2.88353e+06 MAX TERMS = 100 OBSERVED COUNTS (399476) 1 2883528 2 1565506 3 1274469 4 1110139 5 972542 6 841384 7 723676 8 617252 9 523323 10 438858 11 367548 12 306028 13 254553 14 211126 15 174222 16 144464 17 120183 18 99321 19 83548 20 69126 21 58310 22 48889 23 41827 24 35555 25 30123 26 26339 27 22609 28 19781 29 17125 30 15311 31 13513 32 11939 33 10747 34 9797 35 8745 36 7830 37 7089 38 6520 39 5771 40 5244 41 4920 42 4611 43 4122 44 3799 45 3419 46 3179 47 2856 48 2820 49 2472 50 2228 51 2110 52 2074 53 1868 54 1710 55 1600 56 1453 57 1294 58 1250 59 1104 60 1094 61 1021 62 926 63 808 64 835 65 729 66 695 67 605 68 588 69 525 70 494 71 466 72 415 73 413 74 367 75 354 76 301 77 335 78 291 79 267 80 243 81 235 82 220 83 201 84 205 85 187 86 181 87 189 88 144 89 174 90 162 91 141 92 159 93 143 94 145 95 125 96 106 97 113 98 106 99 113 100 111 101 95 102 100 103 84 104 89 105 78 106 87 107 74 108 90 109 74 110 76 111 65 112 67 113 71 114 59 115 49 116 67 117 68 118 44 119 60 120 47 121 69 122 37 123 38 124 37 125 47 126 40 127 47 128 45 129 35 130 37 131 37 132 39 133 33 134 28 135 35 136 36 137 29 138 29 139 36 140 24 141 27 142 27 143 36 144 25 145 23 146 28 147 19 148 17 149 22 150 15 151 22 152 15 153 14 154 15 155 17 156 24 157 11 158 12 159 15 160 13 161 9 162 14 163 17 164 27 165 11 166 15 167 13 168 14 169 13 170 10 171 13 172 15 173 8 174 7 175 13 176 10 177 14 178 12 179 8 180 9 181 15 182 12 183 11 184 6 185 11 186 6 187 7 188 6 189 12 190 8 191 10 192 9 193 8 194 10 195 6 196 13 197 11 198 6 199 6 200 8 201 3 202 9 203 4 204 5 205 14 206 4 207 8 208 7 209 6 210 9 211 6 212 1 213 8 214 4 215 9 216 8 217 7 218 1 219 8 220 6 221 7 222 4 223 6 224 8 225 5 226 7 227 6 228 5 229 3 230 4 231 2 232 3 233 1 234 8 235 8 236 4 237 4 238 4 239 3 240 2 241 2 242 6 243 6 244 2 245 2 246 3 247 8 248 2 249 2 250 2 251 1 252 5 253 3 254 2 255 4 256 1 257 1 258 2 259 2 260 4 261 3 262 2 263 2 264 1 265 3 266 4 268 2 269 1 270 3 271 3 272 7 273 3 274 2 275 4 276 3 277 1 278 2 279 2 280 1 281 2 283 1 284 1 285 6 286 1 287 2 288 2 289 1 290 2 292 4 296 1 297 2 299 2 300 1 301 1 302 4 303 3 304 1 305 1 306 3 307 1 308 1 309 1 310 1 311 1 312 1 313 1 315 1 316 2 317 3 318 2 319 5 320 1 321 3 323 1 324 1 325 1 328 2 329 2 330 2 331 1 332 1 333 2 334 1 335 2 337 1 338 3 340 1 341 3 342 1 343 1 344 1 345 3 346 1 347 3 348 1 349 1 353 2 354 1 355 1 357 1 358 1 359 2 360 1 362 3 364 1 365 3 367 1 368 1 369 2 371 1 373 2 375 1 376 2 377 1 381 1 382 1 385 2 386 2 388 3 390 3 391 1 393 1 395 2 398 1 399 1 400 1 402 1 403 1 404 2 407 2 408 1 409 1 410 1 411 2 413 1 414 1 415 3 416 1 417 1 418 4 419 1 421 2 422 1 423 1 424 2 425 2 426 1 428 2 430 1 434 1 435 1 436 2 437 3 438 1 439 1 440 1 442 1 443 6 445 2 447 3 448 3 451 1 452 1 454 2 455 1 456 1 457 1 464 1 465 1 467 1 471 2 473 2 476 1 479 2 482 1 486 1 488 1 489 1 490 1 492 1 495 1 498 1 499 1 502 1 503 2 504 2 507 2 509 1 511 1 512 1 516 1 517 1 518 1 526 2 531 1 537 2 542 1 543 1 547 1 552 1 554 1 557 3 559 1 561 1 562 1 563 1 566 1 567 1 569 1 574 1 577 1 578 1 579 2 582 1 584 1 586 1 587 2 588 3 592 1 596 1 599 1 605 1 606 1 608 3 610 1 611 1 616 1 617 1 624 1 627 1 629 1 644 1 649 1 651 1 652 1 661 1 666 1 667 1 691 1 694 1 700 1 701 1 708 1 712 1 713 1 716 1 718 1 746 1 754 1 756 1 760 2 762 1 772 2 773 1 784 2 785 1 789 1 797 1 803 1 810 1 815 1 820 1 822 1 824 1 826 1 836 1 871 1 879 1 903 1 908 1 910 1 911 1 932 1 945 1 948 1 949 1 965 1 978 1 1006 1 1007 1 1086 1 1088 1 1112 1 1145 1 1148 2 1149 1 1156 1 1247 1 1336 1 1337 1 1368 1 1386 1 1568 1 1617 1 1673 1 1676 1 1714 1 1789 1 2041 1 2317 1 2664 1 2900 1 3033 1 3615 1 3912 1 6849 1 12408 1 399475 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] .........._......._...__............_.......__._..._.................... 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[COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]