File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/1adf8b4e19032dab8d5dd4292f4ce6/.command.out
Size
1.7 KB
Attempt
  AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 72
  Pass (FILTER=PASS): 7 (9.7%)
  Fail (FILTER=FAIL): 65 (90.3%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 3
  All 3 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 10
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 7
  confidence_below_min(medium<high): 7
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 7
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 6
  total_reads_below_min(3.0<8.0): 5
  confidence_below_min(low<high): 4
  total_reads_below_min(7.0<8.0): 2
  total_reads_below_min(6.0<8.0): 2
  total_reads_below_min(4.0<8.0): 2
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1

Breakdown by confidence:
  high: 7 pass, 11 fail (total: 18)
  low: 0 pass, 35 fail (total: 35)
  medium: 0 pass, 19 fail (total: 19)
Arriba filter: 72 rows -> 7 PASS; wrote BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.arriba.fusions.filter_summary.txt