AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 72
Pass (FILTER=PASS): 7 (9.7%)
Fail (FILTER=FAIL): 65 (90.3%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 7
confidence_below_min(medium<high): 7
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 7
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 6
total_reads_below_min(3.0<8.0): 5
confidence_below_min(low<high): 4
total_reads_below_min(7.0<8.0): 2
total_reads_below_min(6.0<8.0): 2
total_reads_below_min(4.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1
Breakdown by confidence:
high: 7 pass, 11 fail (total: 18)
low: 0 pass, 35 fail (total: 35)
medium: 0 pass, 19 fail (total: 19)
Arriba filter: 72 rows -> 7 PASS; wrote BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.arriba.fusions.filter_summary.txt