AIH curated blacklist: matched 10 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 267
Pass (FILTER=PASS): 48 (18.0%)
Fail (FILTER=FAIL): 219 (82.0%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 10
All 10 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 70
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 36
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 19
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 16
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 9
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 8
confidence_below_min(low<high): 7
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 5
confidence_below_min(medium<high);aih_curated_blacklist: 5
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 5
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 4
total_reads_below_min(7.0<8.0): 3
total_reads_below_min(5.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
Breakdown by confidence:
high: 48 pass, 13 fail (total: 61)
low: 0 pass, 91 fail (total: 91)
medium: 0 pass, 115 fail (total: 115)
Arriba filter: 267 rows -> 48 PASS; wrote BVT_FFPE_TRNA_stm_05_A23WKFTLT4_1.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_stm_05_A23WKFTLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_stm_05_A23WKFTLT4_1.arriba.fusions.filter_summary.txt