09:26:28 : INFO : -reading targets list: ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -mapping reads to genes [50000], rate=3000000.00/min [60000], rate=3600000.00/min [70000], rate=4200000.00/min [80000], rate=4800000.00/min [90000], rate=5400000.00/min [100000], rate=6000000.00/min [110000], rate=6600000.00/min [120000], rate=7200000.00/min [130000], rate=7800000.00/min [140000], rate=8400000.00/min [150000], rate=9000000.00/min [160000], rate=9600000.00/min [170000], rate=10200000.00/min [180000], rate=10800000.00/min [190000], rate=11400000.00/min [200000], rate=12000000.00/min [210000], rate=12600000.00/min [220000], rate=13200000.00/min [230000], rate=13800000.00/min [240000], rate=14400000.00/min [250000], rate=15000000.00/min [260000], rate=15600000.00/min [270000], rate=8100000.00/min [280000], rate=8400000.00/min [290000], rate=8700000.00/min [300000], rate=9000000.00/min [310000], rate=9300000.00/min [320000], rate=9600000.00/min [330000], rate=9900000.00/min [340000], rate=10200000.00/min [350000], rate=10500000.00/min [360000], rate=10800000.00/min [370000], rate=11100000.00/min [380000], rate=11400000.00/min [390000], rate=11700000.00/min [400000], rate=12000000.00/min [410000], rate=12300000.00/min [420000], rate=12600000.00/min [430000], rate=12900000.00/min [440000], rate=13200000.00/min [450000], rate=13500000.00/min [460000], rate=13800000.00/min [470000], rate=9400000.00/min [480000], rate=9600000.00/min [490000], rate=9800000.00/min [500000], rate=10000000.00/min [510000], rate=10200000.00/min [520000], rate=10400000.00/min [530000], rate=10600000.00/min [540000], rate=10800000.00/min [550000], rate=11000000.00/min [560000], rate=11200000.00/min [570000], rate=11400000.00/min [580000], rate=11600000.00/min [590000], rate=11800000.00/min [600000], rate=12000000.00/min [610000], rate=12200000.00/min [620000], rate=12400000.00/min [630000], rate=12600000.00/min [640000], rate=9600000.00/min [650000], rate=9750000.00/min [660000], rate=9900000.00/min [670000], rate=10050000.00/min [680000], rate=10200000.00/min [690000], rate=10350000.00/min [700000], rate=10500000.00/min [710000], rate=10650000.00/min [720000], rate=10800000.00/min [730000], rate=10950000.00/min [740000], rate=11100000.00/min [750000], rate=11250000.00/min [760000], rate=11400000.00/min [770000], rate=11550000.00/min [780000], rate=11700000.00/min [790000], rate=11850000.00/min [800000], rate=12000000.00/min [810000], rate=9720000.00/min [820000], rate=9840000.00/min [830000], rate=9960000.00/min [840000], rate=10080000.00/min [850000], rate=10200000.00/min [860000], rate=10320000.00/min [870000], rate=10440000.00/min [880000], rate=10560000.00/min [890000], rate=10680000.00/min [900000], rate=10800000.00/min [910000], rate=10920000.00/min [920000], rate=11040000.00/min [930000], rate=11160000.00/min [940000], rate=11280000.00/min [950000], rate=11400000.00/min [960000], rate=11520000.00/min [970000], rate=11640000.00/min [980000], rate=9800000.00/min [990000], rate=9900000.00/min [1000000], rate=10000000.00/min [1010000], rate=10100000.00/min [1020000], rate=10200000.00/min [1030000], rate=10300000.00/min [1040000], rate=10400000.00/min [1050000], rate=10500000.00/min [1060000], rate=10600000.00/min [1070000], rate=10700000.00/min [1080000], rate=10800000.00/min [1090000], rate=10900000.00/min [1100000], rate=11000000.00/min [1110000], rate=11100000.00/min [1120000], rate=11200000.00/min [1130000], rate=11300000.00/min [1140000], rate=11400000.00/min [1150000], rate=11500000.00/min [1160000], rate=9942857.14/min [1170000], rate=10028571.43/min [1180000], rate=10114285.71/min [1190000], rate=10200000.00/min [1200000], rate=10285714.29/min [1210000], rate=10371428.57/min [1220000], rate=10457142.86/min [1230000], rate=10542857.14/min [1240000], rate=10628571.43/min [1250000], rate=10714285.71/min [1260000], rate=10800000.00/min [1270000], rate=10885714.29/min [1280000], rate=10971428.57/min [1290000], rate=11057142.86/min [1300000], rate=11142857.14/min [1310000], rate=11228571.43/min [1320000], rate=11314285.71/min [1330000], rate=11400000.00/min [1340000], rate=10050000.00/min [1350000], rate=10125000.00/min [1360000], rate=10200000.00/min [1370000], rate=10275000.00/min [1380000], rate=10350000.00/min [1390000], rate=10425000.00/min [1400000], rate=10500000.00/min [1410000], rate=10575000.00/min [1420000], rate=10650000.00/min [1430000], rate=10725000.00/min [1440000], rate=10800000.00/min [1450000], rate=10875000.00/min [1460000], rate=10950000.00/min [1470000], rate=11025000.00/min [1480000], rate=11100000.00/min [1490000], rate=11175000.00/min [1500000], rate=11250000.00/min [1510000], rate=11325000.00/min [1520000], rate=10133333.33/min [1530000], rate=10200000.00/min [1540000], rate=10266666.67/min [1550000], rate=10333333.33/min [1560000], rate=10400000.00/min [1570000], rate=10466666.67/min [1580000], rate=10533333.33/min [1590000], rate=10600000.00/min [1600000], rate=10666666.67/min [1610000], rate=10733333.33/min [1620000], rate=10800000.00/min [1630000], rate=10866666.67/min [1640000], rate=10933333.33/min [1650000], rate=11000000.00/min [1660000], rate=11066666.67/min [1670000], rate=11133333.33/min [1680000], rate=11200000.00/min [1690000], rate=11266666.67/min [1700000], rate=11333333.33/min [1710000], rate=10260000.00/min [1720000], rate=10320000.00/min [1730000], rate=10380000.00/min [1740000], rate=10440000.00/min [1750000], rate=10500000.00/min [1760000], rate=10560000.00/min [1770000], rate=10620000.00/min [1780000], rate=10680000.00/min [1790000], rate=10740000.00/min [1800000], rate=10800000.00/min [1810000], rate=10860000.00/min [1820000], rate=10920000.00/min [1830000], rate=10980000.00/min [1840000], rate=11040000.00/min [1850000], rate=11100000.00/min [1860000], rate=11160000.00/min [1870000], rate=10200000.00/min [1880000], rate=10254545.45/min [1890000], rate=10309090.91/min [1900000], rate=10363636.36/min [1910000], rate=10418181.82/min [1920000], rate=10472727.27/min [1930000], rate=10527272.73/min [1940000], rate=10581818.18/min [1950000], rate=10636363.64/min [1960000], rate=10690909.09/min [1970000], rate=10745454.55/min [1980000], rate=10800000.00/min [1990000], rate=10854545.45/min [2000000], rate=10909090.91/min [2010000], rate=10963636.36/min [2020000], rate=11018181.82/min [2030000], rate=11072727.27/min [2040000], rate=11127272.73/min [2050000], rate=11181818.18/min [2060000], rate=10300000.00/min [2070000], rate=10350000.00/min [2080000], rate=10400000.00/min [2090000], rate=10450000.00/min [2100000], rate=10500000.00/min [2110000], rate=10550000.00/min [2120000], rate=10600000.00/min [2130000], rate=10650000.00/min [2140000], rate=10700000.00/min [2150000], rate=10750000.00/min [2160000], rate=10800000.00/min [2170000], rate=10850000.00/min [2180000], rate=10900000.00/min [2190000], rate=10950000.00/min [2200000], rate=11000000.00/min [2210000], rate=11050000.00/min [2220000], rate=11100000.00/min [2230000], rate=11150000.00/min [2240000], rate=10338461.54/min [2250000], rate=10384615.38/min [2260000], rate=10430769.23/min [2270000], rate=10476923.08/min [2280000], rate=10523076.92/min [2290000], rate=10569230.77/min [2300000], rate=10615384.62/min [2310000], rate=10661538.46/min [2320000], rate=10707692.31/min [2330000], rate=10753846.15/min [2340000], rate=10800000.00/min [2350000], rate=10846153.85/min [2360000], rate=10892307.69/min [2370000], rate=10938461.54/min [2380000], rate=10984615.38/min [2390000], rate=11030769.23/min [2400000], rate=11076923.08/min [2410000], rate=11123076.92/min [2420000], rate=11169230.77/min [2430000], rate=10414285.71/min [2440000], rate=10457142.86/min [2450000], rate=10500000.00/min [2460000], rate=10542857.14/min [2470000], rate=10585714.29/min [2480000], rate=10628571.43/min [2490000], rate=10671428.57/min [2500000], rate=10714285.71/min [2510000], rate=10757142.86/min [2520000], rate=10800000.00/min [2530000], rate=10842857.14/min [2540000], rate=10885714.29/min [2550000], rate=10928571.43/min [2560000], rate=10971428.57/min [2570000], rate=11014285.71/min [2580000], rate=11057142.86/min [2590000], rate=11100000.00/min [2600000], rate=11142857.14/min [2610000], rate=11185714.29/min [2620000], rate=10480000.00/min [2630000], rate=10520000.00/min [2640000], rate=10560000.00/min [2650000], rate=10600000.00/min [2660000], rate=10640000.00/min [2670000], rate=10680000.00/min [2680000], rate=10720000.00/min [2690000], rate=10760000.00/min [2700000], rate=10800000.00/min [2710000], rate=10840000.00/min [2720000], rate=10880000.00/min [2730000], rate=10920000.00/min [2740000], rate=10960000.00/min [2750000], rate=11000000.00/min [2760000], rate=11040000.00/min [2770000], rate=11080000.00/min [2780000], rate=11120000.00/min [2790000], rate=11160000.00/min [2800000], rate=11200000.00/min [2810000], rate=11240000.00/min [2820000], rate=10575000.00/min [2830000], rate=10612500.00/min [2840000], rate=10650000.00/min [2850000], rate=10687500.00/min [2860000], rate=10725000.00/min [2870000], rate=10762500.00/min [2880000], rate=10800000.00/min [2890000], rate=10837500.00/min [2900000], rate=10875000.00/min [2910000], rate=10912500.00/min [2920000], rate=10950000.00/min [2930000], rate=10987500.00/min [2940000], rate=11025000.00/min [2950000], rate=11062500.00/min [2960000], rate=11100000.00/min [2970000], rate=11137500.00/min [2980000], rate=10517647.06/min [2990000], rate=10552941.18/min [3000000], rate=10588235.29/min [3010000], rate=10623529.41/min [3020000], rate=10658823.53/min [3030000], rate=10694117.65/min [3040000], rate=10729411.76/min [3050000], rate=10764705.88/min [3060000], rate=10800000.00/min [3070000], rate=10835294.12/min [3080000], rate=10870588.24/min [3090000], rate=10905882.35/min [3100000], rate=10941176.47/min [3110000], rate=10976470.59/min [3120000], rate=11011764.71/min [3130000], rate=11047058.82/min [3140000], rate=11082352.94/min [3150000], rate=11117647.06/min [3160000], rate=11152941.18/min [3170000], rate=10566666.67/min [3180000], rate=10600000.00/min [3190000], rate=10633333.33/min [3200000], rate=10666666.67/min [3210000], rate=10700000.00/min [3220000], rate=10733333.33/min [3230000], rate=10766666.67/min [3240000], rate=10800000.00/min [3250000], rate=10833333.33/min [3260000], rate=10866666.67/min [3270000], rate=10900000.00/min [3280000], rate=10933333.33/min [3290000], rate=10966666.67/min [3300000], rate=11000000.00/min [3310000], rate=11033333.33/min [3320000], rate=11066666.67/min [3330000], rate=11100000.00/min [3340000], rate=11133333.33/min [3350000], rate=11166666.67/min [3360000], rate=11200000.00/min [3370000], rate=11233333.33/min [3380000], rate=10673684.21/min [3390000], rate=10705263.16/min [3400000], rate=10736842.11/min [3410000], rate=10768421.05/min [3420000], rate=10800000.00/min [3430000], rate=10831578.95/min [3440000], rate=10863157.89/min [3450000], rate=10894736.84/min [3460000], rate=10926315.79/min [3470000], rate=10957894.74/min [3480000], rate=10989473.68/min [3490000], rate=11021052.63/min [3500000], rate=11052631.58/min [3510000], rate=11084210.53/min [3520000], rate=11115789.47/min [3530000], rate=11147368.42/min [3540000], rate=11178947.37/min [3550000], rate=11210526.32/min [3560000], rate=11242105.26/min [3570000], rate=10710000.00/min [3580000], rate=10740000.00/min [3590000], rate=10770000.00/min [3600000], rate=10800000.00/min [3610000], rate=10830000.00/min [3620000], rate=10860000.00/min [3630000], rate=10890000.00/min [3640000], rate=10920000.00/min [3650000], rate=10950000.00/min [3660000], rate=10980000.00/min [3670000], rate=11010000.00/min [3680000], rate=11040000.00/min [3690000], rate=11070000.00/min [3700000], rate=11100000.00/min [3710000], rate=11130000.00/min [3720000], rate=11160000.00/min [3730000], rate=11190000.00/min [3740000], rate=11220000.00/min [3750000], rate=11250000.00/min [3760000], rate=11280000.00/min [3770000], rate=11310000.00/min [3780000], rate=11340000.00/min [3790000], rate=10828571.43/min [3800000], rate=10857142.86/min [3810000], rate=10885714.29/min [3820000], rate=10914285.71/min [3830000], rate=10942857.14/min [3840000], rate=10971428.57/min [3850000], rate=11000000.00/min [3860000], rate=11028571.43/min [3870000], rate=11057142.86/min [3880000], rate=11085714.29/min [3890000], rate=11114285.71/min [3900000], rate=11142857.14/min [3910000], rate=11171428.57/min [3920000], rate=11200000.00/min [3930000], rate=11228571.43/min [3940000], rate=11257142.86/min [3950000], rate=11285714.29/min [3960000], rate=11314285.71/min [3970000], rate=11342857.14/min [3980000], rate=11371428.57/min [3990000], rate=11400000.00/min [4000000], rate=11428571.43/min [4010000], rate=11457142.86/min [4020000], rate=11485714.29/min [4030000], rate=11514285.71/min [4040000], rate=11542857.14/min [4050000], rate=11045454.55/min [4060000], rate=11072727.27/min [4070000], rate=11100000.00/min [4080000], rate=11127272.73/min [4090000], rate=11154545.45/min [4100000], rate=11181818.18/min [4110000], rate=11209090.91/min [4120000], rate=11236363.64/min [4130000], rate=11263636.36/min [4140000], rate=11290909.09/min [4150000], rate=11318181.82/min [4160000], rate=11345454.55/min [4170000], rate=11372727.27/min [4180000], rate=11400000.00/min [4190000], rate=11427272.73/min [4200000], rate=11454545.45/min [4210000], rate=11481818.18/min [4220000], rate=11509090.91/min [4230000], rate=11536363.64/min [4240000], rate=11563636.36/min [4250000], rate=11590909.09/min [4260000], rate=11618181.82/min [4270000], rate=11645454.55/min [4280000], rate=11672727.27/min [4290000], rate=11700000.00/min [4300000], rate=11727272.73/min [4310000], rate=11754545.45/min [4320000], rate=11781818.18/min [4330000], rate=11295652.17/min [4340000], rate=11321739.13/min [4350000], rate=11347826.09/min [4360000], rate=11373913.04/min [4370000], rate=11400000.00/min [4380000], rate=11426086.96/min [4390000], rate=11452173.91/min [4400000], rate=11478260.87/min [4410000], rate=11504347.83/min [4420000], rate=11530434.78/min [4430000], rate=11556521.74/min [4440000], rate=11582608.70/min [4450000], rate=11608695.65/min [4460000], rate=11634782.61/min [4470000], rate=11660869.57/min [4480000], rate=11686956.52/min [4490000], rate=11713043.48/min [4500000], rate=11739130.43/min [4510000], rate=11765217.39/min [4520000], rate=11791304.35/min [4530000], rate=11817391.30/min [4540000], rate=11843478.26/min [4550000], rate=11869565.22/min [4560000], rate=11895652.17/min [4570000], rate=11921739.13/min [4580000], rate=11450000.00/min [4590000], rate=11475000.00/min [4600000], rate=11500000.00/min [4610000], rate=11525000.00/min [4620000], rate=11550000.00/min [4630000], rate=11575000.00/min [4640000], rate=11600000.00/min [4650000], rate=11625000.00/min [4660000], rate=11650000.00/min [4670000], rate=11675000.00/min [4680000], rate=11700000.00/min [4690000], rate=11725000.00/min [4700000], rate=11750000.00/min [4710000], rate=11775000.00/min [4720000], rate=11800000.00/min [4730000], rate=11825000.00/min [4740000], rate=11850000.00/min [4750000], rate=11875000.00/min [4760000], rate=11900000.00/min [4770000], rate=11925000.00/min [4780000], rate=11950000.00/min [4790000], rate=11975000.00/min [4800000], rate=12000000.00/min [4810000], rate=12025000.00/min [4820000], rate=12050000.00/min [4830000], rate=12075000.00/min [4840000], rate=12100000.00/min [4850000], rate=11640000.00/min [4860000], rate=11664000.00/min [4870000], rate=11688000.00/min [4880000], rate=11712000.00/min [4890000], rate=11736000.00/min [4900000], rate=11760000.00/min [4910000], rate=11784000.00/min [4920000], rate=11808000.00/min [4930000], rate=11832000.00/min [4940000], rate=11856000.00/min [4950000], rate=11880000.00/min [4960000], rate=11904000.00/min [4970000], rate=11928000.00/min [4980000], rate=11952000.00/min [4990000], rate=11976000.00/min [5000000], rate=12000000.00/min [5010000], rate=12024000.00/min [5020000], rate=12048000.00/min [5030000], rate=12072000.00/min [5040000], rate=12096000.00/min [5050000], rate=12120000.00/min [5060000], rate=12144000.00/min [5070000], rate=12168000.00/min [5080000], rate=12192000.00/min [5090000], rate=12216000.00/min [5100000], rate=12240000.00/min [5110000], rate=12264000.00/min [5120000], rate=12288000.00/min [5130000], rate=11838461.54/min [5140000], rate=11861538.46/min [5150000], rate=11884615.38/min [5160000], rate=11907692.31/min [5170000], rate=11930769.23/min [5180000], rate=11953846.15/min [5190000], rate=11976923.08/min [5200000], rate=12000000.00/min [5210000], rate=12023076.92/min [5220000], rate=12046153.85/min [5230000], rate=12069230.77/min [5240000], rate=12092307.69/min [5250000], rate=12115384.62/min [5260000], rate=12138461.54/min [5270000], rate=12161538.46/min [5280000], rate=12184615.38/min [5290000], rate=12207692.31/min [5300000], rate=12230769.23/min [5310000], rate=12253846.15/min [5320000], rate=12276923.08/min [5330000], rate=12300000.00/min [5340000], rate=12323076.92/min [5350000], rate=12346153.85/min [5360000], rate=12369230.77/min [5370000], rate=12392307.69/min [5380000], rate=11955555.56/min [5390000], rate=11977777.78/min [5400000], rate=12000000.00/min [5410000], rate=12022222.22/min [5420000], rate=12044444.44/min [5430000], rate=12066666.67/min [5440000], rate=12088888.89/min [5450000], rate=12111111.11/min [5460000], rate=12133333.33/min [5470000], rate=12155555.56/min [5480000], rate=12177777.78/min [5490000], rate=12200000.00/min [5500000], rate=12222222.22/min [5510000], rate=12244444.44/min [5520000], rate=12266666.67/min [5530000], rate=12288888.89/min [5540000], rate=12311111.11/min [5550000], rate=12333333.33/min [5560000], rate=12355555.56/min [5570000], rate=12377777.78/min [5580000], rate=12400000.00/min [5590000], rate=12422222.22/min [5600000], rate=12444444.44/min [5610000], rate=12466666.67/min [5620000], rate=12042857.14/min [5630000], rate=12064285.71/min [5640000], rate=12085714.29/min [5650000], rate=12107142.86/min [5660000], rate=12128571.43/min [5670000], rate=12150000.00/min [5680000], rate=12171428.57/min [5690000], rate=12192857.14/min [5700000], rate=12214285.71/min [5710000], rate=12235714.29/min [5720000], rate=12257142.86/min [5730000], rate=12278571.43/min [5740000], rate=12300000.00/min [5750000], rate=12321428.57/min [5760000], rate=12342857.14/min [5770000], rate=12364285.71/min [5780000], rate=12385714.29/min [5790000], rate=12407142.86/min [5800000], rate=12428571.43/min [5810000], rate=12450000.00/min [5820000], rate=12471428.57/min [5830000], rate=12492857.14/min [5840000], rate=12082758.62/min [5850000], rate=12103448.28/min [5860000], rate=12124137.93/min [5870000], rate=12144827.59/min [5880000], rate=12165517.24/min [5890000], rate=12186206.90/min [5900000], rate=12206896.55/min [5910000], rate=12227586.21/min [5920000], rate=12248275.86/min [5930000], rate=12268965.52/min [5940000], rate=12289655.17/min [5950000], rate=12310344.83/min [5960000], rate=12331034.48/min [5970000], rate=12351724.14/min [5980000], rate=12372413.79/min [5990000], rate=12393103.45/min [6000000], rate=12413793.10/min [6010000], rate=12434482.76/min [6020000], rate=12455172.41/min [6030000], rate=12475862.07/min [6040000], rate=12080000.00/min [6050000], rate=12100000.00/min [6060000], rate=12120000.00/min [6070000], rate=12140000.00/min [6080000], rate=12160000.00/min [6090000], rate=12180000.00/min [6100000], rate=12200000.00/min [6110000], rate=12220000.00/min [6120000], rate=12240000.00/min [6130000], rate=12260000.00/min [6140000], rate=12280000.00/min [6150000], rate=12300000.00/min [6160000], rate=12320000.00/min [6170000], rate=12340000.00/min [6180000], rate=12360000.00/min [6190000], rate=12380000.00/min [6200000], rate=12400000.00/min [6210000], rate=12420000.00/min [6220000], rate=12440000.00/min [6230000], rate=12460000.00/min [6240000], rate=12480000.00/min [6250000], rate=12500000.00/min [6260000], rate=12520000.00/min [6270000], rate=12540000.00/min [6280000], rate=12560000.00/min [6290000], rate=12174193.55/min [6300000], rate=12193548.39/min [6310000], rate=12212903.23/min [6320000], rate=12232258.06/min [6330000], rate=12251612.90/min [6340000], rate=12270967.74/min [6350000], rate=12290322.58/min [6360000], rate=12309677.42/min [6370000], rate=12329032.26/min [6380000], rate=12348387.10/min [6390000], rate=12367741.94/min [6400000], rate=12387096.77/min [6410000], rate=12406451.61/min [6420000], rate=12425806.45/min [6430000], rate=12445161.29/min [6440000], rate=12464516.13/min [6450000], rate=12483870.97/min [6460000], rate=12503225.81/min [6470000], rate=12522580.65/min [6480000], rate=12541935.48/min [6490000], rate=12561290.32/min [6500000], rate=12580645.16/min [6510000], rate=12600000.00/min [6520000], rate=12619354.84/min [6530000], rate=12638709.68/min [6540000], rate=12658064.52/min [6550000], rate=12677419.35/min [6560000], rate=12300000.00/min [6570000], rate=12318750.00/min [6580000], rate=12337500.00/min [6590000], rate=12356250.00/min [6600000], rate=12375000.00/min [6610000], rate=12393750.00/min [6620000], rate=12412500.00/min [6630000], rate=12431250.00/min [6640000], rate=12450000.00/min [6650000], rate=12468750.00/min [6660000], rate=12487500.00/min [6670000], rate=12506250.00/min [6680000], rate=12525000.00/min [6690000], rate=12543750.00/min [6700000], rate=12562500.00/min [6710000], rate=12581250.00/min [6720000], rate=12600000.00/min [6730000], rate=12618750.00/min [6740000], rate=12637500.00/min [6750000], rate=12656250.00/min [6760000], rate=12675000.00/min [6770000], rate=12693750.00/min [6780000], rate=12712500.00/min [6790000], rate=12731250.00/min [6800000], rate=12750000.00/min [6810000], rate=12768750.00/min [6820000], rate=12400000.00/min [6830000], rate=12418181.82/min [6840000], rate=12436363.64/min [6850000], rate=12454545.45/min [6860000], rate=12472727.27/min [6870000], rate=12490909.09/min [6880000], rate=12509090.91/min [6890000], rate=12527272.73/min [6900000], rate=12545454.55/min [6910000], rate=12563636.36/min [6920000], rate=12581818.18/min [6930000], rate=12600000.00/min [6940000], rate=12618181.82/min [6950000], rate=12636363.64/min [6960000], rate=12654545.45/min [6970000], rate=12672727.27/min [6980000], rate=12690909.09/min [6990000], rate=12709090.91/min [7000000], rate=12727272.73/min [7010000], rate=12745454.55/min [7020000], rate=12763636.36/min [7030000], rate=12781818.18/min [7040000], rate=12800000.00/min [7050000], rate=12818181.82/min [7060000], rate=12836363.64/min [7070000], rate=12854545.45/min [7080000], rate=12872727.27/min [7090000], rate=12890909.09/min [7100000], rate=12529411.76/min [7110000], rate=12547058.82/min [7120000], rate=12564705.88/min [7130000], rate=12582352.94/min [7140000], rate=12600000.00/min [7150000], rate=12617647.06/min [7160000], rate=12635294.12/min [7170000], rate=12652941.18/min [7180000], rate=12670588.24/min [7190000], rate=12688235.29/min [7200000], rate=12705882.35/min [7210000], rate=12723529.41/min [7220000], rate=12741176.47/min [7230000], rate=12758823.53/min [7240000], rate=12776470.59/min [7250000], rate=12794117.65/min [7260000], rate=12811764.71/min [7270000], rate=12829411.76/min [7280000], rate=12847058.82/min [7290000], rate=12864705.88/min [7300000], rate=12882352.94/min [7310000], rate=12900000.00/min [7320000], rate=12917647.06/min [7330000], rate=12565714.29/min [7340000], rate=12582857.14/min [7350000], rate=12600000.00/min [7360000], rate=12617142.86/min [7370000], rate=12634285.71/min [7380000], rate=12651428.57/min [7390000], rate=12668571.43/min [7400000], rate=12685714.29/min [7410000], rate=12702857.14/min [7420000], rate=12720000.00/min [7430000], rate=12737142.86/min [7440000], rate=12754285.71/min [7450000], rate=12771428.57/min [7460000], rate=12788571.43/min [7470000], rate=12805714.29/min [7480000], rate=12822857.14/min [7490000], rate=12840000.00/min [7500000], rate=12857142.86/min [7510000], rate=12874285.71/min [7520000], rate=12891428.57/min [7530000], rate=12908571.43/min [7540000], rate=12925714.29/min [7550000], rate=12942857.14/min [7560000], rate=12960000.00/min [7570000], rate=12977142.86/min [7580000], rate=12994285.71/min [7590000], rate=13011428.57/min [7600000], rate=12666666.67/min [7610000], rate=12683333.33/min [7620000], rate=12700000.00/min [7630000], rate=12716666.67/min [7640000], rate=12733333.33/min [7650000], rate=12750000.00/min [7660000], rate=12766666.67/min [7670000], rate=12783333.33/min [7680000], rate=12800000.00/min [7690000], rate=12816666.67/min [7700000], rate=12833333.33/min [7710000], rate=12850000.00/min [7720000], rate=12866666.67/min [7730000], rate=12883333.33/min [7740000], rate=12900000.00/min [7750000], rate=12916666.67/min [7760000], rate=12933333.33/min [7770000], rate=12950000.00/min [7780000], rate=12966666.67/min [7790000], rate=12983333.33/min [7800000], rate=13000000.00/min [7810000], rate=13016666.67/min [7820000], rate=13033333.33/min [7830000], rate=13050000.00/min [7840000], rate=13066666.67/min [7850000], rate=13083333.33/min [7860000], rate=13100000.00/min [7870000], rate=13116666.67/min [7880000], rate=12778378.38/min [7890000], rate=12794594.59/min [7900000], rate=12810810.81/min [7910000], rate=12827027.03/min [7920000], rate=12843243.24/min [7930000], rate=12859459.46/min [7940000], rate=12875675.68/min [7950000], rate=12891891.89/min [7960000], rate=12908108.11/min [7970000], rate=12924324.32/min [7980000], rate=12940540.54/min [7990000], rate=12956756.76/min [8000000], rate=12972972.97/min [8010000], rate=12989189.19/min [8020000], rate=13005405.41/min [8030000], rate=13021621.62/min [8040000], rate=13037837.84/min [8050000], rate=13054054.05/min [8060000], rate=13070270.27/min [8070000], rate=13086486.49/min [8080000], rate=13102702.70/min [8090000], rate=13118918.92/min [8100000], rate=13135135.14/min [8110000], rate=13151351.35/min [8120000], rate=13167567.57/min [8130000], rate=13183783.78/min [8140000], rate=13200000.00/min [8150000], rate=13216216.22/min [8160000], rate=12884210.53/min [8170000], rate=12900000.00/min [8180000], rate=12915789.47/min [8190000], rate=12931578.95/min [8200000], rate=12947368.42/min [8210000], rate=12963157.89/min [8220000], rate=12978947.37/min [8230000], rate=12994736.84/min [8240000], rate=13010526.32/min [8250000], rate=13026315.79/min [8260000], rate=13042105.26/min [8270000], rate=13057894.74/min [8280000], rate=13073684.21/min [8290000], rate=13089473.68/min [8300000], rate=13105263.16/min [8310000], rate=13121052.63/min [8320000], rate=13136842.11/min [8330000], rate=13152631.58/min [8340000], rate=13168421.05/min [8350000], rate=13184210.53/min [8360000], rate=13200000.00/min [8370000], rate=13215789.47/min [8380000], rate=13231578.95/min [8390000], rate=13247368.42/min [8400000], rate=13263157.89/min [8410000], rate=13278947.37/min [8420000], rate=13294736.84/min [8430000], rate=13310526.32/min [8440000], rate=12984615.38/min [8450000], rate=13000000.00/min [8460000], rate=13015384.62/min [8470000], rate=13030769.23/min [8480000], rate=13046153.85/min [8490000], rate=13061538.46/min [8500000], rate=13076923.08/min [8510000], rate=13092307.69/min [8520000], rate=13107692.31/min [8530000], rate=13123076.92/min [8540000], rate=13138461.54/min [8550000], rate=13153846.15/min [8560000], rate=13169230.77/min [8570000], rate=13184615.38/min [8580000], rate=13200000.00/min [8590000], rate=13215384.62/min [8600000], rate=13230769.23/min [8610000], rate=13246153.85/min [8620000], rate=13261538.46/min [8630000], rate=13276923.08/min [8640000], rate=13292307.69/min [8650000], rate=13307692.31/min [8660000], rate=13323076.92/min [8670000], rate=13338461.54/min [8680000], rate=13353846.15/min [8690000], rate=13035000.00/min [8700000], rate=13050000.00/min [8710000], rate=13065000.00/min [8720000], rate=13080000.00/min [8730000], rate=13095000.00/min [8740000], rate=13110000.00/min [8750000], rate=13125000.00/min [8760000], rate=13140000.00/min [8770000], rate=13155000.00/min [8780000], rate=13170000.00/min [8790000], rate=13185000.00/min [8800000], rate=13200000.00/min [8810000], rate=13215000.00/min [8820000], rate=13230000.00/min [8830000], rate=13245000.00/min [8840000], rate=13260000.00/min [8850000], rate=13275000.00/min [8860000], rate=13290000.00/min [8870000], rate=13305000.00/min [8880000], rate=13320000.00/min [8890000], rate=13335000.00/min [8900000], rate=13350000.00/min [8910000], rate=13365000.00/min [8920000], rate=13053658.54/min [8930000], rate=13068292.68/min [8940000], rate=13082926.83/min [8950000], rate=13097560.98/min [8960000], rate=13112195.12/min [8970000], rate=13126829.27/min [8980000], rate=13141463.41/min [8990000], rate=13156097.56/min [9000000], rate=13170731.71/min [9010000], rate=13185365.85/min [9020000], rate=13200000.00/min [9030000], rate=13214634.15/min [9040000], rate=13229268.29/min [9050000], rate=13243902.44/min [9060000], rate=13258536.59/min [9070000], rate=13273170.73/min [9080000], rate=13287804.88/min [9090000], rate=13302439.02/min [9100000], rate=13317073.17/min [9110000], rate=13331707.32/min [9120000], rate=13346341.46/min [9130000], rate=13360975.61/min [9140000], rate=13375609.76/min [9150000], rate=13390243.90/min [9160000], rate=13404878.05/min [9170000], rate=13419512.20/min [9180000], rate=13114285.71/min [9190000], rate=13128571.43/min [9200000], rate=13142857.14/min [9210000], rate=13157142.86/min [9220000], rate=13171428.57/min [9230000], rate=13185714.29/min [9240000], rate=13200000.00/min [9250000], rate=13214285.71/min [9260000], rate=13228571.43/min [9270000], rate=13242857.14/min [9280000], rate=13257142.86/min [9290000], rate=13271428.57/min [9300000], rate=13285714.29/min [9310000], rate=13300000.00/min [9320000], rate=13314285.71/min [9330000], rate=13328571.43/min [9340000], rate=13342857.14/min [9350000], rate=13357142.86/min [9360000], rate=13371428.57/min [9370000], rate=13385714.29/min [9380000], rate=13400000.00/min [9390000], rate=13414285.71/min [9400000], rate=13428571.43/min [9410000], rate=13442857.14/min [9420000], rate=13457142.86/min [9430000], rate=13471428.57/min [9440000], rate=13485714.29/min [9450000], rate=13186046.51/min [9460000], rate=13200000.00/min [9470000], rate=13213953.49/min [9480000], rate=13227906.98/min [9490000], rate=13241860.47/min [9500000], rate=13255813.95/min [9510000], rate=13269767.44/min [9520000], rate=13283720.93/min [9530000], rate=13297674.42/min [9540000], rate=13311627.91/min [9550000], rate=13325581.40/min [9560000], rate=13339534.88/min [9570000], rate=13353488.37/min [9580000], rate=13367441.86/min [9590000], rate=13381395.35/min [9600000], rate=13395348.84/min [9610000], rate=13409302.33/min [9620000], rate=13423255.81/min [9630000], rate=13437209.30/min [9640000], rate=13451162.79/min [9650000], rate=13465116.28/min [9660000], rate=13479069.77/min [9670000], rate=13493023.26/min [9680000], rate=13506976.74/min [9690000], rate=13520930.23/min [9700000], rate=13534883.72/min [9710000], rate=13548837.21/min [9720000], rate=13562790.70/min [9730000], rate=13268181.82/min [9740000], rate=13281818.18/min [9750000], rate=13295454.55/min [9760000], rate=13309090.91/min [9770000], rate=13322727.27/min [9780000], rate=13336363.64/min [9790000], rate=13350000.00/min [9800000], rate=13363636.36/min [9810000], rate=13377272.73/min [9820000], rate=13390909.09/min [9830000], rate=13404545.45/min [9840000], rate=13418181.82/min [9850000], rate=13431818.18/min [9860000], rate=13445454.55/min [9870000], rate=13459090.91/min [9880000], rate=13472727.27/min [9890000], rate=13486363.64/min [9900000], rate=13500000.00/min [9910000], rate=13513636.36/min [9920000], rate=13527272.73/min [9930000], rate=13540909.09/min [9940000], rate=13554545.45/min [9950000], rate=13568181.82/min [9960000], rate=13581818.18/min [9970000], rate=13595454.55/min [9980000], rate=13609090.91/min [9990000], rate=13622727.27/min [10000000], rate=13333333.33/min [10010000], rate=13346666.67/min [10020000], rate=13360000.00/min [10030000], rate=13373333.33/min [10040000], rate=13386666.67/min [10050000], rate=13400000.00/min [10060000], rate=13413333.33/min [10070000], rate=13426666.67/min [10080000], rate=13440000.00/min [10090000], rate=13453333.33/min [10100000], rate=13466666.67/min [10110000], rate=13480000.00/min [10120000], rate=13493333.33/min [10130000], rate=13506666.67/min [10140000], rate=13520000.00/min [10150000], rate=13533333.33/min [10160000], rate=13546666.67/min [10170000], rate=13560000.00/min [10180000], rate=13573333.33/min [10190000], rate=13586666.67/min [10200000], rate=13600000.00/min [10210000], rate=13613333.33/min [10220000], rate=13626666.67/min [10230000], rate=13640000.00/min [10240000], rate=13356521.74/min [10250000], rate=13369565.22/min [10260000], rate=13382608.70/min [10270000], rate=13395652.17/min [10280000], rate=13408695.65/min [10290000], rate=13421739.13/min [10300000], rate=13434782.61/min [10310000], rate=13447826.09/min [10320000], rate=13460869.57/min [10330000], rate=13473913.04/min [10340000], rate=13486956.52/min [10350000], rate=13500000.00/min [10360000], rate=13513043.48/min [10370000], rate=13526086.96/min [10380000], rate=13539130.43/min [10390000], rate=13552173.91/min [10400000], rate=13565217.39/min [10410000], rate=13578260.87/min [10420000], rate=13591304.35/min [10430000], rate=13604347.83/min [10440000], rate=13617391.30/min [10450000], rate=13630434.78/min [10460000], rate=13643478.26/min [10470000], rate=13656521.74/min [10480000], rate=13669565.22/min [10490000], rate=13682608.70/min [10500000], rate=13695652.17/min [10510000], rate=13708695.65/min [10520000], rate=13721739.13/min [10530000], rate=13442553.19/min [10540000], rate=13455319.15/min [10550000], rate=13468085.11/min [10560000], rate=13480851.06/min [10570000], rate=13493617.02/min [10580000], rate=13506382.98/min [10590000], rate=13519148.94/min [10600000], rate=13531914.89/min [10610000], rate=13544680.85/min 09:27:25 : INFO : Running: /usr/local/src/CTAT-SPLICING/util/annotate_cancer_introns.pl --introns_file BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns --ctat_genome_lib ctat_genome_lib_build_dir --intron_col 0 > BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer.introns.prelim Use of uninitialized value $ctat_genome_lib in concatenation (.) or string at /usr/local/src/CTAT-SPLICING/util/annotate_cancer_introns.pl line 18. -BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns: identified 6248 cancer introns 09:27:26 : INFO : Execution Time = 0.01 minutes. CMD: /usr/local/src/CTAT-SPLICING/util/annotate_cancer_introns.pl --introns_file BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns --ctat_genome_lib ctat_genome_lib_build_dir --intron_col 0 > BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer.introns.prelim 09:27:26 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/prelim_introns.ok 09:27:26 : INFO : Running: /usr/local/src/CTAT-SPLICING/util/filter_by_min_total_reads.py --cancer_intron_candidates BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer.introns.prelim --min_total_reads 5 > BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer.introns 09:27:26 : INFO : Execution Time = 0.01 minutes. CMD: /usr/local/src/CTAT-SPLICING/util/filter_by_min_total_reads.py --cancer_intron_candidates BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer.introns.prelim --min_total_reads 5 > BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer.introns 09:27:26 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/introns_filtered.ok 09:27:26 : INFO : -found 2271 cancer introns 09:27:26 : INFO : Running: /usr/local/src/CTAT-SPLICING/util/make_igv_splice_bed.py --all_introns BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns --cancer_introns BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer.introns --genome_lib_dir ctat_genome_lib_build_dir --output_bed BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns.for_IGV.bed 09:27:27 : INFO : Creating the BED File. 09:27:32 : INFO : Saving Bed File as BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns.for_IGV.bed 09:27:32 : INFO : Execution Time = 0.09 minutes. CMD: /usr/local/src/CTAT-SPLICING/util/make_igv_splice_bed.py --all_introns BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns --cancer_introns BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer.introns --genome_lib_dir ctat_genome_lib_build_dir --output_bed BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns.for_IGV.bed 09:27:32 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/intron_igv_bed.ok 09:27:32 : INFO : Running: /usr/local/src/CTAT-SPLICING/util/igv_read_alignment_extractor.py --igv_introns_bed BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns.for_IGV.bed --bam BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --output_prefix BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1 [W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai 09:46:34 : INFO : Execution Time = 19.03 minutes. CMD: /usr/local/src/CTAT-SPLICING/util/igv_read_alignment_extractor.py --igv_introns_bed BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns.for_IGV.bed --bam BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --output_prefix BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1 09:46:34 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/reads_alignments_extracted.ok 09:46:34 : INFO : Running: samtools sort -o BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer_intron_reads.sorted.bam BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer_intron_reads.bam 09:46:34 : INFO : Execution Time = 0.01 minutes. CMD: samtools sort -o BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer_intron_reads.sorted.bam BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer_intron_reads.bam 09:46:34 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/sort_cancer_intron_reads.ok 09:46:34 : INFO : Running: samtools sort -o BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.bam BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.bam [bam_sort_core] merging from 89 files and 1 in-memory blocks... 10:07:42 : INFO : Execution Time = 21.13 minutes. CMD: samtools sort -o BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.bam BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.bam 10:07:42 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/sort_gene_reads.ok 10:07:42 : INFO : Running: /usr/local/src/CTAT-SPLICING/bamsifter/bamsifter -c 50 -i 50 -o BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam.tmp --keep_secondary BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.bam 10:14:03 : INFO : Execution Time = 6.35 minutes. CMD: /usr/local/src/CTAT-SPLICING/bamsifter/bamsifter -c 50 -i 50 -o BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam.tmp --keep_secondary BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.bam 10:14:03 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam.tmp.ok 10:14:03 : INFO : Running: samtools sort -o BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam.tmp [bam_sort_core] merging from 3 files and 1 in-memory blocks... 10:14:53 : INFO : Execution Time = 0.84 minutes. CMD: samtools sort -o BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam.tmp 10:14:53 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam.tmpsorted.ok 10:14:53 : INFO : Running: samtools index BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam 10:14:59 : INFO : Execution Time = 0.09 minutes. CMD: samtools index BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam 10:14:59 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.gene_reads.sorted.sifted.bam.indexed.ok 10:14:59 : INFO : Running: samtools index BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer_intron_reads.sorted.bam 10:14:59 : INFO : Execution Time = 0.00 minutes. CMD: samtools index BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer_intron_reads.sorted.bam 10:14:59 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.cancer_intron_reads.sorted.bam.indexed.ok 10:14:59 : INFO : Running: create_report BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns.for_IGV.bed ctat_genome_lib_build_dir/ref_genome.fa --type junction --output BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.ctat-splicing.igv.html --track-config BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.igv.tracks --info-columns gene variant_name uniquely_mapped multi_mapped TCGA GTEx --title 'CTAT_Splicing: BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1' [W::hts_idx_load3] The index file is older than the data file: ctat_genome_lib_build_dir/refGene.sort.bed.gz.tbi 10:21:04 : INFO : Execution Time = 6.08 minutes. CMD: create_report BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.introns.for_IGV.bed ctat_genome_lib_build_dir/ref_genome.fa --type junction --output BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.ctat-splicing.igv.html --track-config BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.igv.tracks --info-columns gene variant_name uniquely_mapped multi_mapped TCGA GTEx --title 'CTAT_Splicing: BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1' 10:21:04 : INFO : Running: touch /tmp/nxf.y9ZqMHJsPb/BVT_FFPE_TRNA_bst_05_A23WKFTLT4_1.chckpts/igv_create_html.ok 10:21:04 : INFO : done.