File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/5734b347776acaab0164516bef2217/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/89fb22de8f94be92b005bb24ba0edd/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/5734b347776acaab0164516bef2217/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/fb5814cff6051034a00d74cb649e6a/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/5734b347776acaab0164516bef2217/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 340223008
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	340223008
Known Splicing Events:	337252919
Partial Novel Splicing Events:	1415629
Novel Splicing Events:	1427358
Filtered Splicing Events:	127102

Total splicing  Junctions:	497299
Known Splicing Junctions:	254702
Partial Novel Splicing Junctions:	126140
Novel Splicing Junctions:	116457

===================================================================
Create BED file ...
Create Interact file ...