File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/d68bed9cf9d4e273d9da8d52623851/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/6802e5b20cb9d64d80ab801507ee46/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/d68bed9cf9d4e273d9da8d52623851/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/d68bed9cf9d4e273d9da8d52623851/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/a60abc8bba469f1210d001de2a9373/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 133799668
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	133799668
Known Splicing Events:	132240599
Partial Novel Splicing Events:	826399
Novel Splicing Events:	624566
Filtered Splicing Events:	108104

Total splicing  Junctions:	266689
Known Splicing Junctions:	191164
Partial Novel Splicing Junctions:	39245
Novel Splicing Junctions:	36280

===================================================================
Create BED file ...
Create Interact file ...