File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/e5ccb1f57af8a20b0fd183975b523d/.command.out
Size
1.5 KB
Attempt
  AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 43
  Pass (FILTER=PASS): 13 (30.2%)
  Fail (FILTER=FAIL): 30 (69.8%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 3
  All 3 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 14
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 4
  confidence_below_min(low<high): 2
  confidence_below_min(low<high);aih_curated_blacklist: 2
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 2
  confidence_below_min(medium<high);aih_curated_blacklist: 1
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 1

Breakdown by confidence:
  high: 13 pass, 0 fail (total: 13)
  low: 0 pass, 14 fail (total: 14)
  medium: 0 pass, 16 fail (total: 16)
Arriba filter: 43 rows -> 13 PASS; wrote BVT_FFPE_TRNA_kid_01_A23WKFTLT4_3.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_kid_01_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_kid_01_A23WKFTLT4_3.arriba.fusions.filter_summary.txt