File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/db908f913436b664cdc0d4d8971743/.command.log
Size
5.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/d0f40d5a475651544ca6d36463cfce/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/db908f913436b664cdc0d4d8971743/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/db908f913436b664cdc0d4d8971743/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/6610aafa9bea60610192fbb05eaa48/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
NARS2--GAB2
starfusion
arriba
EXOC2--EPHA5
starfusion
arriba
RIC1--FMNL1
starfusion
arriba
C22orf39--MYO18B-AS1
starfusion
arriba
MSI2--CLTC
starfusion
arriba
GUSBP13--NAIP
starfusion
ZSCAN22--WWC3
starfusion
AC092070.2--MAN2B1
starfusion
arriba
SHMT2--RACGAP1
starfusion
arriba
DOK7--MICB
arriba
BMP2K--BMP2K
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC2
arriba
TVP23C--CDRT4
arriba
HIRA--MYO18B-AS1
arriba
GTPBP2--AL008627.1
arriba
GTPBP2--MBOAT1
arriba
ZNF525--AC007786.2
arriba
ZNF525--AC007786.3
arriba
EXOC2--EPHA5-AS1
arriba

  0%|          | 0/21 [00:00<?, ?it/s]
Processing NARS2--GAB2:   0%|          | 0/21 [00:00<?, ?it/s]
Processing NARS2--GAB2:   5%|▍         | 1/21 [00:00<00:02,  9.24it/s]
Processing EXOC2--EPHA5:   5%|▍         | 1/21 [00:00<00:02,  9.24it/s]
Processing EXOC2--EPHA5:  10%|▉         | 2/21 [00:00<00:02,  9.47it/s]
Processing RIC1--FMNL1:  10%|▉         | 2/21 [00:00<00:02,  9.47it/s] 
Processing RIC1--FMNL1:  14%|█▍        | 3/21 [00:00<00:01,  9.55it/s]
Processing C22orf39--MYO18B-AS1:  14%|█▍        | 3/21 [00:00<00:01,  9.55it/s]
Processing C22orf39--MYO18B-AS1:  19%|█▉        | 4/21 [00:00<00:01,  9.59it/s]
Processing MSI2--CLTC:  19%|█▉        | 4/21 [00:00<00:01,  9.59it/s]          
Processing MSI2--CLTC:  24%|██▍       | 5/21 [00:00<00:01,  9.61it/s]
Processing GUSBP13--NAIP:  24%|██▍       | 5/21 [00:00<00:01,  9.61it/s]
Processing GUSBP13--NAIP:  29%|██▊       | 6/21 [00:00<00:01,  9.62it/s]
Processing ZSCAN22--WWC3:  29%|██▊       | 6/21 [00:00<00:01,  9.62it/s]
Processing ZSCAN22--WWC3:  33%|███▎      | 7/21 [00:00<00:01,  9.63it/s]
Processing AC092070.2--MAN2B1:  33%|███▎      | 7/21 [00:00<00:01,  9.63it/s]
Processing AC092070.2--MAN2B1:  38%|███▊      | 8/21 [00:00<00:01,  9.63it/s]
Processing SHMT2--RACGAP1:  38%|███▊      | 8/21 [00:00<00:01,  9.63it/s]    
Processing SHMT2--RACGAP1:  43%|████▎     | 9/21 [00:00<00:01,  9.64it/s]
Processing DOK7--MICB:  43%|████▎     | 9/21 [00:00<00:01,  9.64it/s]    
Processing DOK7--MICB:  48%|████▊     | 10/21 [00:01<00:01,  9.64it/s]
Processing BMP2K--BMP2K:  48%|████▊     | 10/21 [00:01<00:01,  9.64it/s]
Processing BMP2K--BMP2K:  52%|█████▏    | 11/21 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  52%|█████▏    | 11/21 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  57%|█████▋    | 12/21 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  57%|█████▋    | 12/21 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  62%|██████▏   | 13/21 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  62%|██████▏   | 13/21 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  67%|██████▋   | 14/21 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 14/21 [00:01<00:00,  9.65it/s]  
Processing TVP23C--CDRT4:  71%|███████▏  | 15/21 [00:01<00:00,  9.65it/s]
Processing HIRA--MYO18B-AS1:  71%|███████▏  | 15/21 [00:01<00:00,  9.65it/s]
Processing HIRA--MYO18B-AS1:  76%|███████▌  | 16/21 [00:01<00:00,  9.65it/s]
Processing GTPBP2--AL008627.1:  76%|███████▌  | 16/21 [00:01<00:00,  9.65it/s]
Processing GTPBP2--AL008627.1:  81%|████████  | 17/21 [00:01<00:00,  9.65it/s]
Processing GTPBP2--MBOAT1:  81%|████████  | 17/21 [00:01<00:00,  9.65it/s]    
Processing GTPBP2--MBOAT1:  86%|████████▌ | 18/21 [00:01<00:00,  9.65it/s]
Processing ZNF525--AC007786.2:  86%|████████▌ | 18/21 [00:01<00:00,  9.65it/s]
Processing ZNF525--AC007786.2:  90%|█████████ | 19/21 [00:01<00:00,  9.65it/s]
Processing ZNF525--AC007786.3:  90%|█████████ | 19/21 [00:01<00:00,  9.65it/s]
Processing ZNF525--AC007786.3:  95%|█████████▌| 20/21 [00:02<00:00,  9.65it/s]
Processing EXOC2--EPHA5-AS1:  95%|█████████▌| 20/21 [00:02<00:00,  9.65it/s]  
Processing EXOC2--EPHA5-AS1: 100%|██████████| 21/21 [00:02<00:00,  9.65it/s]
Processing EXOC2--EPHA5-AS1: 100%|██████████| 21/21 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory