.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/5ccc8d189fa13792fc27a9e384bdfc/.command.sh
Size: 203 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.md.bam" > BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1_full_bam_saturation_values.txt