AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 20
Pass (FILTER=PASS): 1 (5.0%)
Fail (FILTER=FAIL): 19 (95.0%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 4
confidence_below_min(medium<high);aih_curated_blacklist: 2
confidence_below_min(medium<high): 2
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 2
total_reads_below_min(7.0<8.0): 1
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0);aih_curated_blacklist: 1
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 1
Breakdown by confidence:
high: 1 pass, 1 fail (total: 2)
low: 0 pass, 13 fail (total: 13)
medium: 0 pass, 5 fail (total: 5)
Arriba filter: 20 rows -> 1 PASS; wrote BVT_FFPE_TRNA_stm_06_A23WKFTLT4_3.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_stm_06_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_stm_06_A23WKFTLT4_3.arriba.fusions.filter_summary.txt