File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/13e5915b2df843f3dd1794de2b5cc0/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/8ff0c498584b02434c3bacbf92fa91/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/53ca4113904ed59511c5e4727855f0/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/13e5915b2df843f3dd1794de2b5cc0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/13e5915b2df843f3dd1794de2b5cc0/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 335764468
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	335764468
Known Splicing Events:	332681499
Partial Novel Splicing Events:	1456243
Novel Splicing Events:	1495429
Filtered Splicing Events:	131297

Total splicing  Junctions:	581705
Known Splicing Junctions:	268738
Partial Novel Splicing Junctions:	157179
Novel Splicing Junctions:	155788

===================================================================
Create BED file ...
Create Interact file ...