File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/e536ab4764499e761e028b7f0fc2da/.command.log
Size
726 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/8820f8cdb6cf28f7fbca3ca5c5d829/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/e536ab4764499e761e028b7f0fc2da/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/e536ab4764499e761e028b7f0fc2da/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3: vaf_p90=1.000000 -> CLEAN

Output saved to: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.predictions.csv
Summary: 0/1 samples flagged as contaminated