File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/d656f5ee83e3cf91e13220bafa5c2d/.command.log
Size
5.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/d656f5ee83e3cf91e13220bafa5c2d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/35db94e0aedb4c1b9eccd938546813/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/d656f5ee83e3cf91e13220bafa5c2d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/1ecceebd4c85f59b6d3b2810f47e91/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NARS2--GAB2
starfusion
arriba
EXOC2--EPHA5
starfusion
arriba
RIC1--FMNL1
starfusion
arriba
MSI2--CLTC
starfusion
arriba
GUSB--NAIP
starfusion
AC092070.2--MAN2B1
starfusion
arriba
SHMT2--RACGAP1
starfusion
arriba
ZSCAN22--WWC3
starfusion
arriba
C22orf39--MYO18B-AS1
starfusion
arriba
DOK7--MICB
arriba
BMP2K--BMP2K
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
TVP23C--CDRT4
arriba
CASP14--ZSCAN22
arriba
OR1I1--ZSCAN22
arriba
EXOC2--EPHA5-AS1
arriba
ZNF525--AC007786.2
arriba
ZNF525--AC007786.3
arriba

  0%|          | 0/20 [00:00<?, ?it/s]
Processing NARS2--GAB2:   0%|          | 0/20 [00:00<?, ?it/s]
Processing NARS2--GAB2:   5%|▌         | 1/20 [00:00<00:02,  9.23it/s]
Processing EXOC2--EPHA5:   5%|▌         | 1/20 [00:00<00:02,  9.23it/s]
Processing EXOC2--EPHA5:  10%|█         | 2/20 [00:00<00:01,  9.47it/s]
Processing RIC1--FMNL1:  10%|█         | 2/20 [00:00<00:01,  9.47it/s] 
Processing RIC1--FMNL1:  15%|█▌        | 3/20 [00:00<00:01,  9.55it/s]
Processing MSI2--CLTC:  15%|█▌        | 3/20 [00:00<00:01,  9.55it/s] 
Processing MSI2--CLTC:  20%|██        | 4/20 [00:00<00:01,  9.58it/s]
Processing GUSB--NAIP:  20%|██        | 4/20 [00:00<00:01,  9.58it/s]
Processing GUSB--NAIP:  25%|██▌       | 5/20 [00:00<00:01,  9.60it/s]
Processing AC092070.2--MAN2B1:  25%|██▌       | 5/20 [00:00<00:01,  9.60it/s]
Processing AC092070.2--MAN2B1:  30%|███       | 6/20 [00:00<00:01,  9.60it/s]
Processing SHMT2--RACGAP1:  30%|███       | 6/20 [00:00<00:01,  9.60it/s]    
Processing SHMT2--RACGAP1:  35%|███▌      | 7/20 [00:00<00:01,  9.61it/s]
Processing ZSCAN22--WWC3:  35%|███▌      | 7/20 [00:00<00:01,  9.61it/s] 
Processing ZSCAN22--WWC3:  40%|████      | 8/20 [00:00<00:01,  9.62it/s]
Processing C22orf39--MYO18B-AS1:  40%|████      | 8/20 [00:00<00:01,  9.62it/s]
Processing C22orf39--MYO18B-AS1:  45%|████▌     | 9/20 [00:00<00:01,  9.63it/s]
Processing DOK7--MICB:  45%|████▌     | 9/20 [00:00<00:01,  9.63it/s]          
Processing DOK7--MICB:  50%|█████     | 10/20 [00:01<00:01,  9.63it/s]
Processing BMP2K--BMP2K:  50%|█████     | 10/20 [00:01<00:01,  9.63it/s]
Processing BMP2K--BMP2K:  55%|█████▌    | 11/20 [00:01<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC1:  55%|█████▌    | 11/20 [00:01<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC1:  60%|██████    | 12/20 [00:01<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC2:  60%|██████    | 12/20 [00:01<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC2:  65%|██████▌   | 13/20 [00:01<00:00,  9.61it/s]
Processing PCDHA4--PCDHA13:  65%|██████▌   | 13/20 [00:01<00:00,  9.61it/s]
Processing PCDHA4--PCDHA13:  70%|███████   | 14/20 [00:01<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  70%|███████   | 14/20 [00:01<00:00,  9.62it/s]  
Processing TVP23C--CDRT4:  75%|███████▌  | 15/20 [00:01<00:00,  9.63it/s]
Processing CASP14--ZSCAN22:  75%|███████▌  | 15/20 [00:01<00:00,  9.63it/s]
Processing CASP14--ZSCAN22:  80%|████████  | 16/20 [00:01<00:00,  9.63it/s]
Processing OR1I1--ZSCAN22:  80%|████████  | 16/20 [00:01<00:00,  9.63it/s] 
Processing OR1I1--ZSCAN22:  85%|████████▌ | 17/20 [00:01<00:00,  9.64it/s]
Processing EXOC2--EPHA5-AS1:  85%|████████▌ | 17/20 [00:01<00:00,  9.64it/s]
Processing EXOC2--EPHA5-AS1:  90%|█████████ | 18/20 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.2:  90%|█████████ | 18/20 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.2:  95%|█████████▌| 19/20 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.3:  95%|█████████▌| 19/20 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.3: 100%|██████████| 20/20 [00:02<00:00,  9.64it/s]
Processing ZNF525--AC007786.3: 100%|██████████| 20/20 [00:02<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory