File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/7383e325ca271da18d523b135e0ea5/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/2863421a8cda614374b00a78d27fdf/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/7383e325ca271da18d523b135e0ea5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/f31e1bfaae32188632cd1587451669/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/7383e325ca271da18d523b135e0ea5/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1/abundance.h5
Successfully converted BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1/abundance.h5 to BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1
  Mean Fragment Length: 116.2 bp
  Median Fragment Length: 111.0 bp
  pct_mito_est_counts: 0.009%
  pct_ribo_est_counts: 0.914%
  pct_hk_est_counts: 0.464%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.017%
  pct_ribo_tpm: 2.793%
  pct_hk_tpm: 0.702%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.051%