Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/9c3b58ad3ad1c96a56aaf93e7daab6/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/c47923497513f5c8510a489b81f9f8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/c47923497513f5c8510a489b81f9f8/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 285497227
unpaired = 5618720
MERGED PAIRED END READS = 285497227
MATES PROCESSED = 576613174
TOTAL READS     = 291115947
DISTINCT READS  = 6.7107e+07
DISTINCT COUNTS = 1181
MAX COUNT       = 1147978
COUNTS OF 1     = 1.82218e+07
MAX TERMS       = 100
OBSERVED COUNTS (1147979)
1	18221831
2	12031498
3	9180207
4	6956032
5	5177770
6	3803663
7	2773845
8	2021214
9	1482335
10	1093827
11	819199
12	619929
13	479799
14	374410
15	298814
16	240635
17	196369
18	162848
19	135621
20	114212
21	97196
22	82881
23	71347
24	61257
25	53575
26	46459
27	40937
28	36123
29	31933
30	28144
31	24977
32	22687
33	20345
34	18318
35	16642
36	15073
37	13750
38	12615
39	11368
40	10577
41	9734
42	9150
43	8439
44	7933
45	7359
46	6849
47	6462
48	6074
49	5696
50	5456
51	4991
52	4683
53	4481
54	4267
55	3940
56	3846
57	3528
58	3471
59	3077
60	3016
61	2937
62	2764
63	2590
64	2468
65	2398
66	2299
67	2162
68	2012
69	2057
70	1934
71	1883
72	1769
73	1700
74	1648
75	1586
76	1595
77	1411
78	1349
79	1376
80	1320
81	1247
82	1220
83	1145
84	1185
85	1106
86	1057
87	1043
88	993
89	927
90	903
91	847
92	903
93	794
94	794
95	789
96	759
97	750
98	771
99	710
100	631
101	664
102	638
103	623
104	575
105	602
106	581
107	543
108	537
109	518
110	474
111	480
112	517
113	464
114	462
115	452
116	466
117	427
118	426
119	417
120	385
121	414
122	397
123	374
124	364
125	384
126	343
127	353
128	335
129	353
130	325
131	338
132	302
133	297
134	291
135	295
136	311
137	297
138	239
139	273
140	274
141	242
142	258
143	253
144	230
145	249
146	203
147	235
148	245
149	253
150	232
151	196
152	234
153	195
154	193
155	211
156	201
157	212
158	214
159	200
160	198
161	200
162	164
163	170
164	156
165	176
166	165
167	164
168	151
169	158
170	142
171	145
172	125
173	160
174	132
175	149
176	141
177	126
178	131
179	149
180	114
181	100
182	139
183	140
184	131
185	106
186	127
187	128
188	101
189	131
190	112
191	117
192	126
193	101
194	122
195	99
196	96
197	82
198	112
199	100
200	93
201	87
202	88
203	71
204	101
205	87
206	97
207	107
208	90
209	99
210	83
211	81
212	79
213	79
214	73
215	68
216	70
217	60
218	70
219	69
220	75
221	82
222	79
223	73
224	71
225	53
226	64
227	73
228	76
229	80
230	75
231	88
232	58
233	59
234	52
235	44
236	61
237	50
238	59
239	58
240	51
241	63
242	75
243	55
244	61
245	63
246	47
247	51
248	51
249	59
250	43
251	46
252	52
253	57
254	55
255	35
256	40
257	51
258	47
259	48
260	43
261	44
262	46
263	40
264	42
265	62
266	37
267	48
268	39
269	37
270	47
271	39
272	46
273	43
274	46
275	44
276	45
277	36
278	36
279	38
280	43
281	41
282	41
283	48
284	34
285	33
286	36
287	33
288	29
289	27
290	41
291	37
292	29
293	32
294	32
295	33
296	33
297	28
298	32
299	37
300	24
301	32
302	36
303	35
304	32
305	29
306	32
307	27
308	26
309	28
310	30
311	32
312	32
313	30
314	29
315	37
316	24
317	28
318	33
319	25
320	18
321	21
322	26
323	32
324	24
325	24
326	20
327	21
328	20
329	29
330	16
331	21
332	25
333	21
334	19
335	16
336	10
337	32
338	17
339	27
340	26
341	21
342	21
343	25
344	25
345	23
346	20
347	15
348	20
349	15
350	13
351	20
352	13
353	18
354	15
355	21
356	11
357	16
358	23
359	25
360	17
361	19
362	14
363	17
364	17
365	12
366	18
367	15
368	17
369	21
370	9
371	22
372	15
373	16
374	16
375	10
376	17
377	15
378	11
379	11
380	18
381	20
382	11
383	14
384	16
385	14
386	18
387	17
388	14
389	11
390	13
391	18
392	13
393	18
394	14
395	16
396	6
397	12
398	15
399	16
400	11
401	10
402	11
403	19
404	17
405	10
406	18
407	7
408	10
409	10
410	15
411	7
412	5
413	12
414	10
415	18
416	16
417	7
418	9
419	10
420	10
421	4
422	10
423	10
424	12
425	5
426	12
427	14
428	9
429	16
430	7
431	9
432	13
433	9
434	9
435	8
436	11
437	6
438	6
439	12
440	7
441	7
442	13
443	10
444	4
445	11
446	9
447	6
448	10
449	8
450	10
451	11
452	5
453	6
454	5
455	10
456	8
457	6
458	9
459	4
460	11
461	8
462	8
463	9
464	13
465	10
466	9
467	7
468	10
469	10
470	9
472	11
473	8
474	10
475	10
476	6
477	6
478	12
479	11
480	2
481	5
482	6
483	7
484	4
485	4
486	8
487	12
488	8
489	7
490	7
491	7
492	5
493	9
494	6
495	8
496	6
497	10
498	6
499	9
500	11
501	6
502	4
503	5
504	5
505	10
506	6
507	6
508	12
509	2
510	1
511	5
512	2
513	6
514	7
515	4
516	7
517	5
518	6
519	2
520	7
521	3
522	6
523	8
524	8
525	7
526	4
527	4
528	3
529	6
530	3
531	5
532	5
533	5
534	7
535	5
536	4
537	5
538	5
539	7
540	9
541	7
542	6
543	3
544	7
545	9
546	5
547	4
548	4
549	3
550	4
551	5
552	7
553	5
554	3
555	1
556	2
557	4
558	3
559	6
560	2
561	4
562	4
563	5
564	4
565	5
566	8
567	8
568	5
569	3
570	5
571	6
572	6
573	3
574	4
575	4
576	4
577	6
578	2
579	3
580	5
581	4
582	4
583	7
584	4
585	3
586	4
587	1
588	2
589	4
590	4
591	6
592	6
593	8
594	3
595	3
596	4
597	2
598	5
599	3
600	1
601	3
602	2
603	3
604	4
605	4
606	4
607	1
608	1
609	1
610	1
611	5
612	2
613	1
614	5
615	3
616	3
617	3
618	3
619	3
620	8
621	4
622	4
623	2
624	1
625	1
626	4
627	2
628	5
629	2
630	6
632	4
633	3
634	2
635	1
636	1
637	1
638	1
639	1
640	2
641	3
642	4
643	2
644	1
646	3
647	3
648	2
649	1
650	1
652	2
655	4
656	3
657	1
658	3
660	1
661	7
662	2
663	3
664	4
665	2
666	3
667	2
668	5
669	3
670	4
672	2
673	5
674	3
675	1
676	1
677	3
678	2
679	2
680	3
681	1
682	6
683	2
684	2
685	5
686	3
687	6
688	2
689	3
690	5
691	2
692	1
693	7
694	2
695	2
697	2
698	3
700	2
701	3
702	1
703	3
704	3
705	1
706	1
708	1
709	2
710	4
711	2
712	3
713	3
714	1
717	6
718	2
719	2
720	5
721	2
722	3
723	3
724	3
725	4
728	2
729	4
731	2
732	4
733	2
735	2
736	3
737	2
738	5
739	2
740	1
741	1
742	2
743	1
744	2
745	3
746	3
747	2
748	5
749	2
750	3
751	2
752	1
753	3
754	3
756	2
757	1
758	2
761	5
762	2
763	3
764	1
765	2
766	1
767	1
768	1
770	2
771	1
774	2
776	3
777	2
778	1
779	2
780	1
781	4
782	2
785	2
786	1
787	2
788	1
791	2
792	3
794	1
795	1
797	1
798	3
800	2
801	2
802	2
803	2
804	2
805	4
806	2
809	2
810	1
811	2
812	1
814	3
816	3
817	1
818	2
819	1
820	1
821	2
823	1
824	1
825	1
827	1
828	2
829	3
830	4
832	1
834	1
835	2
836	1
837	1
838	2
839	1
841	2
842	1
843	2
846	2
847	3
848	2
850	2
852	1
853	2
855	1
856	2
857	1
858	2
859	2
860	1
862	1
863	3
864	2
866	1
869	2
870	1
871	1
872	2
873	1
875	2
877	4
879	2
880	3
882	1
885	1
886	2
887	1
889	3
890	1
892	4
895	1
896	1
898	2
900	2
902	1
905	4
906	1
910	2
911	2
912	1
914	2
915	1
917	1
918	1
919	2
922	1
923	2
930	1
931	3
933	1
934	2
937	2
939	2
940	1
945	1
946	2
947	1
948	2
949	2
950	1
951	1
953	4
954	1
959	1
960	2
961	3
965	1
968	1
970	1
971	3
972	2
973	2
975	1
976	1
977	2
978	1
981	1
982	1
983	3
988	1
989	1
992	2
997	2
999	1
1000	2
1001	1
1003	1
1005	2
1006	1
1007	1
1008	1
1010	1
1012	3
1014	1
1015	1
1016	1
1018	1
1020	1
1024	2
1026	1
1027	2
1028	1
1029	1
1030	1
1031	2
1032	1
1039	2
1040	1
1042	2
1044	1
1046	2
1051	1
1054	1
1055	1
1056	1
1058	1
1059	1
1060	1
1061	1
1062	1
1063	1
1066	1
1067	1
1068	2
1069	2
1071	4
1072	1
1073	3
1074	1
1082	1
1083	3
1085	3
1086	1
1089	2
1094	1
1095	1
1096	2
1097	1
1099	3
1100	1
1101	1
1102	1
1108	2
1109	1
1121	2
1123	1
1127	2
1128	1
1130	2
1131	1
1135	1
1142	1
1143	1
1146	1
1151	1
1156	1
1161	2
1171	1
1175	1
1182	1
1183	1
1186	1
1190	1
1191	1
1193	2
1197	1
1198	2
1207	1
1209	2
1212	1
1215	1
1218	1
1219	1
1220	1
1223	1
1228	1
1229	1
1233	2
1239	1
1243	2
1246	2
1248	1
1249	1
1255	1
1256	1
1257	2
1274	1
1295	1
1296	1
1297	1
1306	1
1309	1
1312	1
1321	1
1329	2
1332	1
1335	1
1341	1
1346	1
1348	1
1351	1
1354	1
1357	2
1358	1
1363	1
1364	1
1365	1
1370	1
1371	1
1378	1
1385	1
1389	1
1390	1
1404	1
1406	1
1409	1
1412	1
1420	1
1425	1
1433	1
1434	2
1439	1
1440	1
1442	1
1449	1
1450	1
1451	1
1455	1
1458	1
1459	1
1465	1
1472	1
1473	1
1476	2
1479	1
1481	1
1482	1
1483	1
1490	1
1492	1
1493	1
1496	1
1499	1
1511	1
1515	1
1521	1
1524	1
1525	2
1530	1
1549	1
1556	1
1568	1
1573	1
1580	1
1582	1
1586	2
1587	1
1588	1
1593	1
1598	1
1603	1
1604	1
1610	1
1612	1
1614	1
1622	1
1628	1
1634	2
1637	1
1638	1
1640	1
1641	1
1658	1
1662	1
1669	2
1672	1
1681	1
1684	1
1689	1
1704	1
1707	1
1739	1
1754	1
1756	2
1758	1
1770	1
1772	1
1778	1
1779	1
1786	1
1799	2
1802	2
1816	1
1824	1
1826	1
1833	1
1847	1
1855	1
1861	1
1874	1
1875	1
1895	1
1899	1
1904	1
1908	1
1910	1
1922	1
1935	1
1939	1
1944	1
1946	1
1947	1
1952	1
1960	1
1978	1
2013	1
2039	1
2058	1
2059	1
2097	1
2105	1
2113	1
2129	1
2151	1
2158	1
2167	1
2182	1
2184	1
2190	1
2217	1
2261	1
2263	1
2268	1
2333	1
2357	1
2363	1
2366	1
2407	1
2410	1
2418	1
2439	1
2470	1
2502	1
2551	1
2563	1
2597	1
2608	1
2613	1
2645	1
2687	1
2775	1
2816	1
2820	1
2838	1
2874	1
3122	1
3257	1
3380	1
3390	1
3520	1
3568	1
3601	1
3645	1
3691	1
3781	1
3849	1
3971	1
4266	1
4311	1
4841	1
5468	1
6630	1
9924	1
13119	1
23798	1
1147978	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.....__.._....._...__...._..._._.._._.............._._........_..._...._
....._......_.__.._._.__........_........_.......__...._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]