Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/1ab77812e8ec325cb121387ca15337/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/2f34f317156d93b2cb1416b2fce5c6/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/2f34f317156d93b2cb1416b2fce5c6/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/846c206db78162f227342c5402c45b/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
LINC00993--LINC02636
starfusion
arriba
HECTD1--PRKD1
starfusion
arriba
IPMK--CACNB2
starfusion
arriba
DAAM1--DHRS4
starfusion
arriba
PIEZO2--KCNIP4
starfusion
arriba
DERL1--AC091096.1
starfusion
arriba
ANXA7--VN1R54P
starfusion
arriba
KCNIP4--RPGRIP1
starfusion
GUCY1B1--SH3D19
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
AC138035.1--SEPTIN14
starfusion
arriba
PIEZO2--AC096719.1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
AC092821.3--PZP
starfusion
arriba
FSIP1--AC013652.1
starfusion
AGAP4--FRMPD2
starfusion
ERLIN2--AC068672.2
arriba
ERLIN2--AC068672.1
arriba
TVP23C--CDRT4
arriba
STAM--AC069545.1
arriba
STAM--ZWINT
arriba
AC092807.3--DDAH1
arriba
XPNPEP1--AL590623.1
arriba
XPNPEP1--KSR1P1
arriba
0%| | 0/25 [00:00<?, ?it/s]
Processing LINC00993--LINC02636: 0%| | 0/25 [00:00<?, ?it/s]
Processing LINC00993--LINC02636: 4%|▍ | 1/25 [00:00<00:02, 9.23it/s]
Processing HECTD1--PRKD1: 4%|▍ | 1/25 [00:00<00:02, 9.23it/s]
Processing HECTD1--PRKD1: 8%|▊ | 2/25 [00:00<00:02, 9.46it/s]
Processing IPMK--CACNB2: 8%|▊ | 2/25 [00:00<00:02, 9.46it/s]
Processing IPMK--CACNB2: 12%|█▏ | 3/25 [00:00<00:02, 9.54it/s]
Processing DAAM1--DHRS4: 12%|█▏ | 3/25 [00:00<00:02, 9.54it/s]
Processing DAAM1--DHRS4: 16%|█▌ | 4/25 [00:00<00:02, 9.58it/s]
Processing PIEZO2--KCNIP4: 16%|█▌ | 4/25 [00:00<00:02, 9.58it/s]
Processing PIEZO2--KCNIP4: 20%|██ | 5/25 [00:00<00:02, 9.60it/s]
Processing DERL1--AC091096.1: 20%|██ | 5/25 [00:00<00:02, 9.60it/s]
Processing DERL1--AC091096.1: 24%|██▍ | 6/25 [00:00<00:01, 9.62it/s]
Processing ANXA7--VN1R54P: 24%|██▍ | 6/25 [00:00<00:01, 9.62it/s]
Processing ANXA7--VN1R54P: 28%|██▊ | 7/25 [00:00<00:01, 9.63it/s]
Processing KCNIP4--RPGRIP1: 28%|██▊ | 7/25 [00:00<00:01, 9.63it/s]
Processing KCNIP4--RPGRIP1: 32%|███▏ | 8/25 [00:00<00:01, 9.63it/s]
Processing GUCY1B1--SH3D19: 32%|███▏ | 8/25 [00:00<00:01, 9.63it/s]
Processing GUCY1B1--SH3D19: 36%|███▌ | 9/25 [00:00<00:01, 9.63it/s]
Processing TLK2--AC240565.1: 36%|███▌ | 9/25 [00:00<00:01, 9.63it/s]
Processing TLK2--AC240565.1: 40%|████ | 10/25 [00:01<00:01, 9.63it/s]
Processing TLK2P1--AC110079.1: 40%|████ | 10/25 [00:01<00:01, 9.63it/s]
Processing TLK2P1--AC110079.1: 44%|████▍ | 11/25 [00:01<00:01, 9.64it/s]
Processing AC138035.1--SEPTIN14: 44%|████▍ | 11/25 [00:01<00:01, 9.64it/s]
Processing AC138035.1--SEPTIN14: 48%|████▊ | 12/25 [00:01<00:01, 9.64it/s]
Processing PIEZO2--AC096719.1: 48%|████▊ | 12/25 [00:01<00:01, 9.64it/s]
Processing PIEZO2--AC096719.1: 52%|█████▏ | 13/25 [00:01<00:01, 9.63it/s]
Processing STX16--NPEPL1: 52%|█████▏ | 13/25 [00:01<00:01, 9.63it/s]
Processing STX16--NPEPL1: 56%|█████▌ | 14/25 [00:01<00:01, 9.64it/s]
Processing AC092821.3--PZP: 56%|█████▌ | 14/25 [00:01<00:01, 9.64it/s]
Processing AC092821.3--PZP: 60%|██████ | 15/25 [00:01<00:01, 9.64it/s]
Processing FSIP1--AC013652.1: 60%|██████ | 15/25 [00:01<00:01, 9.64it/s]
Processing FSIP1--AC013652.1: 64%|██████▍ | 16/25 [00:01<00:00, 9.64it/s]
Processing AGAP4--FRMPD2: 64%|██████▍ | 16/25 [00:01<00:00, 9.64it/s]
Processing AGAP4--FRMPD2: 68%|██████▊ | 17/25 [00:01<00:00, 9.64it/s]
Processing ERLIN2--AC068672.2: 68%|██████▊ | 17/25 [00:01<00:00, 9.64it/s]
Processing ERLIN2--AC068672.2: 72%|███████▏ | 18/25 [00:01<00:00, 9.64it/s]
Processing ERLIN2--AC068672.1: 72%|███████▏ | 18/25 [00:01<00:00, 9.64it/s]
Processing ERLIN2--AC068672.1: 76%|███████▌ | 19/25 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 76%|███████▌ | 19/25 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 80%|████████ | 20/25 [00:02<00:00, 9.64it/s]
Processing STAM--AC069545.1: 80%|████████ | 20/25 [00:02<00:00, 9.64it/s]
Processing STAM--AC069545.1: 84%|████████▍ | 21/25 [00:02<00:00, 9.64it/s]
Processing STAM--ZWINT: 84%|████████▍ | 21/25 [00:02<00:00, 9.64it/s]
Processing STAM--ZWINT: 88%|████████▊ | 22/25 [00:02<00:00, 9.64it/s]
Processing AC092807.3--DDAH1: 88%|████████▊ | 22/25 [00:02<00:00, 9.64it/s]
Processing AC092807.3--DDAH1: 92%|█████████▏| 23/25 [00:02<00:00, 9.64it/s]
Processing XPNPEP1--AL590623.1: 92%|█████████▏| 23/25 [00:02<00:00, 9.64it/s]
Processing XPNPEP1--AL590623.1: 96%|█████████▌| 24/25 [00:02<00:00, 9.64it/s]
Processing XPNPEP1--KSR1P1: 96%|█████████▌| 24/25 [00:02<00:00, 9.64it/s]
Processing XPNPEP1--KSR1P1: 100%|██████████| 25/25 [00:02<00:00, 9.64it/s]
Processing XPNPEP1--KSR1P1: 100%|██████████| 25/25 [00:02<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory