Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/1ab77812e8ec325cb121387ca15337/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/2f34f317156d93b2cb1416b2fce5c6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/2f34f317156d93b2cb1416b2fce5c6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/846c206db78162f227342c5402c45b/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
LINC00993--LINC02636
starfusion
arriba
HECTD1--PRKD1
starfusion
arriba
IPMK--CACNB2
starfusion
arriba
DAAM1--DHRS4
starfusion
arriba
PIEZO2--KCNIP4
starfusion
arriba
DERL1--AC091096.1
starfusion
arriba
ANXA7--VN1R54P
starfusion
arriba
KCNIP4--RPGRIP1
starfusion
GUCY1B1--SH3D19
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
AC138035.1--SEPTIN14
starfusion
arriba
PIEZO2--AC096719.1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
AC092821.3--PZP
starfusion
arriba
FSIP1--AC013652.1
starfusion
AGAP4--FRMPD2
starfusion
ERLIN2--AC068672.2
arriba
ERLIN2--AC068672.1
arriba
TVP23C--CDRT4
arriba
STAM--AC069545.1
arriba
STAM--ZWINT
arriba
AC092807.3--DDAH1
arriba
XPNPEP1--AL590623.1
arriba
XPNPEP1--KSR1P1
arriba

  0%|          | 0/25 [00:00<?, ?it/s]
Processing LINC00993--LINC02636:   0%|          | 0/25 [00:00<?, ?it/s]
Processing LINC00993--LINC02636:   4%|▍         | 1/25 [00:00<00:02,  9.23it/s]
Processing HECTD1--PRKD1:   4%|▍         | 1/25 [00:00<00:02,  9.23it/s]       
Processing HECTD1--PRKD1:   8%|▊         | 2/25 [00:00<00:02,  9.46it/s]
Processing IPMK--CACNB2:   8%|▊         | 2/25 [00:00<00:02,  9.46it/s] 
Processing IPMK--CACNB2:  12%|█▏        | 3/25 [00:00<00:02,  9.54it/s]
Processing DAAM1--DHRS4:  12%|█▏        | 3/25 [00:00<00:02,  9.54it/s]
Processing DAAM1--DHRS4:  16%|█▌        | 4/25 [00:00<00:02,  9.58it/s]
Processing PIEZO2--KCNIP4:  16%|█▌        | 4/25 [00:00<00:02,  9.58it/s]
Processing PIEZO2--KCNIP4:  20%|██        | 5/25 [00:00<00:02,  9.60it/s]
Processing DERL1--AC091096.1:  20%|██        | 5/25 [00:00<00:02,  9.60it/s]
Processing DERL1--AC091096.1:  24%|██▍       | 6/25 [00:00<00:01,  9.62it/s]
Processing ANXA7--VN1R54P:  24%|██▍       | 6/25 [00:00<00:01,  9.62it/s]   
Processing ANXA7--VN1R54P:  28%|██▊       | 7/25 [00:00<00:01,  9.63it/s]
Processing KCNIP4--RPGRIP1:  28%|██▊       | 7/25 [00:00<00:01,  9.63it/s]
Processing KCNIP4--RPGRIP1:  32%|███▏      | 8/25 [00:00<00:01,  9.63it/s]
Processing GUCY1B1--SH3D19:  32%|███▏      | 8/25 [00:00<00:01,  9.63it/s]
Processing GUCY1B1--SH3D19:  36%|███▌      | 9/25 [00:00<00:01,  9.63it/s]
Processing TLK2--AC240565.1:  36%|███▌      | 9/25 [00:00<00:01,  9.63it/s]
Processing TLK2--AC240565.1:  40%|████      | 10/25 [00:01<00:01,  9.63it/s]
Processing TLK2P1--AC110079.1:  40%|████      | 10/25 [00:01<00:01,  9.63it/s]
Processing TLK2P1--AC110079.1:  44%|████▍     | 11/25 [00:01<00:01,  9.64it/s]
Processing AC138035.1--SEPTIN14:  44%|████▍     | 11/25 [00:01<00:01,  9.64it/s]
Processing AC138035.1--SEPTIN14:  48%|████▊     | 12/25 [00:01<00:01,  9.64it/s]
Processing PIEZO2--AC096719.1:  48%|████▊     | 12/25 [00:01<00:01,  9.64it/s]  
Processing PIEZO2--AC096719.1:  52%|█████▏    | 13/25 [00:01<00:01,  9.63it/s]
Processing STX16--NPEPL1:  52%|█████▏    | 13/25 [00:01<00:01,  9.63it/s]     
Processing STX16--NPEPL1:  56%|█████▌    | 14/25 [00:01<00:01,  9.64it/s]
Processing AC092821.3--PZP:  56%|█████▌    | 14/25 [00:01<00:01,  9.64it/s]
Processing AC092821.3--PZP:  60%|██████    | 15/25 [00:01<00:01,  9.64it/s]
Processing FSIP1--AC013652.1:  60%|██████    | 15/25 [00:01<00:01,  9.64it/s]
Processing FSIP1--AC013652.1:  64%|██████▍   | 16/25 [00:01<00:00,  9.64it/s]
Processing AGAP4--FRMPD2:  64%|██████▍   | 16/25 [00:01<00:00,  9.64it/s]    
Processing AGAP4--FRMPD2:  68%|██████▊   | 17/25 [00:01<00:00,  9.64it/s]
Processing ERLIN2--AC068672.2:  68%|██████▊   | 17/25 [00:01<00:00,  9.64it/s]
Processing ERLIN2--AC068672.2:  72%|███████▏  | 18/25 [00:01<00:00,  9.64it/s]
Processing ERLIN2--AC068672.1:  72%|███████▏  | 18/25 [00:01<00:00,  9.64it/s]
Processing ERLIN2--AC068672.1:  76%|███████▌  | 19/25 [00:01<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  76%|███████▌  | 19/25 [00:01<00:00,  9.64it/s]     
Processing TVP23C--CDRT4:  80%|████████  | 20/25 [00:02<00:00,  9.64it/s]
Processing STAM--AC069545.1:  80%|████████  | 20/25 [00:02<00:00,  9.64it/s]
Processing STAM--AC069545.1:  84%|████████▍ | 21/25 [00:02<00:00,  9.64it/s]
Processing STAM--ZWINT:  84%|████████▍ | 21/25 [00:02<00:00,  9.64it/s]     
Processing STAM--ZWINT:  88%|████████▊ | 22/25 [00:02<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  88%|████████▊ | 22/25 [00:02<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  92%|█████████▏| 23/25 [00:02<00:00,  9.64it/s]
Processing XPNPEP1--AL590623.1:  92%|█████████▏| 23/25 [00:02<00:00,  9.64it/s]
Processing XPNPEP1--AL590623.1:  96%|█████████▌| 24/25 [00:02<00:00,  9.64it/s]
Processing XPNPEP1--KSR1P1:  96%|█████████▌| 24/25 [00:02<00:00,  9.64it/s]    
Processing XPNPEP1--KSR1P1: 100%|██████████| 25/25 [00:02<00:00,  9.64it/s]
Processing XPNPEP1--KSR1P1: 100%|██████████| 25/25 [00:02<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory