.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (BVT_FFPE_TRNA_crv_01_A23WKFTLT4_3)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e620a9f9f620f5c13d33c44de03f1d/.command.log
Size: 509 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (BVT_FFPE_TRNA_crv_01_A23WKFTLT4_3)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/6cfa8bcf4315d0c725b35af10e2795/BVT_FFPE_TRNA_crv_01_A23WKFTLT4_3.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e620a9f9f620f5c13d33c44de03f1d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e620a9f9f620f5c13d33c44de03f1d/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory