File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/8dbf7fe968759b44f69c4f9e4be47b/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/8dbf7fe968759b44f69c4f9e4be47b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/8dbf7fe968759b44f69c4f9e4be47b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/aadfd18b39aa261c1f27b3128eceb7/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/1c5f2a85dd76803805b4403edd609b/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 299287879
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	299287879
Known Splicing Events:	296485952
Partial Novel Splicing Events:	1601695
Novel Splicing Events:	1010282
Filtered Splicing Events:	189950

Total splicing  Junctions:	520470
Known Splicing Junctions:	243098
Partial Novel Splicing Junctions:	123601
Novel Splicing Junctions:	153771

===================================================================
Create BED file ...
Create Interact file ...