Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/a893831c44acf600906427c76ac900/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/3fd193d6e774e6f2ba9e677370f6ce/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/9389a3e16c53c0796f876b5b2451da/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/9389a3e16c53c0796f876b5b2451da/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (1637891) splicing reads. 135027 splicing junctions. 124011 known splicing junctions. 11016 novel splicing junctions.
sampling 10% (3275783) splicing reads. 152029 splicing junctions. 136234 known splicing junctions. 15795 novel splicing junctions.
sampling 15% (4913675) splicing reads. 160846 splicing junctions. 141943 known splicing junctions. 18903 novel splicing junctions.
sampling 20% (6551567) splicing reads. 166510 splicing junctions. 145347 known splicing junctions. 21163 novel splicing junctions.
sampling 25% (8189459) splicing reads. 170596 splicing junctions. 147704 known splicing junctions. 22892 novel splicing junctions.
sampling 30% (9827351) splicing reads. 173807 splicing junctions. 149522 known splicing junctions. 24285 novel splicing junctions.
sampling 35% (11465243) splicing reads. 176483 splicing junctions. 150982 known splicing junctions. 25501 novel splicing junctions.
sampling 40% (13103135) splicing reads. 178721 splicing junctions. 152192 known splicing junctions. 26529 novel splicing junctions.
sampling 45% (14741027) splicing reads. 180624 splicing junctions. 153180 known splicing junctions. 27444 novel splicing junctions.
sampling 50% (16378919) splicing reads. 182292 splicing junctions. 154081 known splicing junctions. 28211 novel splicing junctions.
sampling 55% (18016811) splicing reads. 183760 splicing junctions. 154816 known splicing junctions. 28944 novel splicing junctions.
sampling 60% (19654703) splicing reads. 185037 splicing junctions. 155464 known splicing junctions. 29573 novel splicing junctions.
sampling 65% (21292595) splicing reads. 186108 splicing junctions. 156007 known splicing junctions. 30101 novel splicing junctions.
sampling 70% (22930487) splicing reads. 187112 splicing junctions. 156478 known splicing junctions. 30634 novel splicing junctions.
sampling 75% (24568379) splicing reads. 187929 splicing junctions. 156889 known splicing junctions. 31040 novel splicing junctions.
sampling 80% (26206271) splicing reads. 188602 splicing junctions. 157200 known splicing junctions. 31402 novel splicing junctions.
sampling 85% (27844163) splicing reads. 189228 splicing junctions. 157502 known splicing junctions. 31726 novel splicing junctions.
sampling 90% (29482055) splicing reads. 189703 splicing junctions. 157727 known splicing junctions. 31976 novel splicing junctions.
sampling 95% (31119947) splicing reads. 190067 splicing junctions. 157914 known splicing junctions. 32153 novel splicing junctions.
sampling 100% (32757839) splicing reads. 190360 splicing junctions. 158059 known splicing junctions. 32301 novel splicing junctions.
null device 
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