Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/d5965c0c843629270f297ce0c78505/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/d5965c0c843629270f297ce0c78505/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/c80ba00917f77f540958a519950d49/BVT_FFPE_TRNA_crv_02_A23WKFTLT4_1.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/75/c52a23060671398a8253a658f32ecc/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)

  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 9
  Pass (FILTER=PASS): 0 (0.0%)
  Fail (FILTER=FAIL): 9 (100.0%)

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 5
  confidence_below_min(low<high): 1
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 1

Breakdown by confidence:
  low: 0 pass, 4 fail (total: 4)
  medium: 0 pass, 5 fail (total: 5)
Arriba filter: 9 rows -> 0 PASS; wrote BVT_FFPE_TRNA_crv_02_A23WKFTLT4_1.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_crv_02_A23WKFTLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_crv_02_A23WKFTLT4_1.arriba.fusions.filter_summary.txt