File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/fe2c0b2b9ac9e29c5c94907e1ea970/.command.log
Size
726 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/fe2c0b2b9ac9e29c5c94907e1ea970/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/e09ec8c3d8e3afd796981f6734b476/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/fe2c0b2b9ac9e29c5c94907e1ea970/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1: vaf_p90=1.000000 -> CLEAN

Output saved to: BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1.predictions.csv
Summary: 0/1 samples flagged as contaminated