[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	190373731
Known Splicing Events:	188233716
Partial Novel Splicing Events:	990441
Novel Splicing Events:	1025268
Filtered Splicing Events:	124306

Total splicing  Junctions:	327671
Known Splicing Junctions:	208863
Partial Novel Splicing Junctions:	55915
Novel Splicing Junctions:	62893

===================================================================
Create BED file ...
Create Interact file ...