File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/5b1b1bdc5c7c21493ff69e6aa543af/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/51a801f44b82a09301106ce3f6c001/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/672306414d777cb5a5f28979717e38/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/5b1b1bdc5c7c21493ff69e6aa543af/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/5b1b1bdc5c7c21493ff69e6aa543af/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 190373731
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	190373731
Known Splicing Events:	188233716
Partial Novel Splicing Events:	990441
Novel Splicing Events:	1025268
Filtered Splicing Events:	124306

Total splicing  Junctions:	327671
Known Splicing Junctions:	208863
Partial Novel Splicing Junctions:	55915
Novel Splicing Junctions:	62893

===================================================================
Create BED file ...
Create Interact file ...