.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (BVT_FFPE_TRNA_utn_02_A23WKFTLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/ed1ca52ed3ae458370e0df0e8b7041/.command.log
Size: 509 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (BVT_FFPE_TRNA_utn_02_A23WKFTLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/e899ed75ac65e69c91353e38aaf59f/BVT_FFPE_TRNA_utn_02_A23WKFTLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/ed1ca52ed3ae458370e0df0e8b7041/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/ed1ca52ed3ae458370e0df0e8b7041/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory