Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/18170299ca86b3649b731b11b6cc48/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/528c0bada29e993cebac55d8c251cc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/528c0bada29e993cebac55d8c251cc/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 536000000 records
paired = 265537022
unpaired = 5583571
MERGED PAIRED END READS = 265537022
MATES PROCESSED = 536657615
TOTAL READS     = 271120593
DISTINCT READS  = 8.63406e+07
DISTINCT COUNTS = 1476
MAX COUNT       = 1051028
COUNTS OF 1     = 3.25352e+07
MAX TERMS       = 100
OBSERVED COUNTS (1051029)
1	32535188
2	19546637
3	12185702
4	7530541
5	4657784
6	2920773
7	1871196
8	1237657
9	846256
10	596103
11	434201
12	325242
13	248243
14	194331
15	155399
16	124372
17	102689
18	84891
19	71130
20	60417
21	51816
22	44909
23	39128
24	34736
25	30488
26	27189
27	24174
28	21732
29	19656
30	17786
31	16109
32	14903
33	13604
34	12552
35	11269
36	10492
37	9689
38	9113
39	8564
40	7756
41	7383
42	6950
43	6495
44	5936
45	5750
46	5477
47	5048
48	4778
49	4506
50	4315
51	4133
52	3903
53	3692
54	3520
55	3373
56	3255
57	3115
58	2928
59	2818
60	2718
61	2553
62	2429
63	2274
64	2181
65	2113
66	2040
67	1918
68	1858
69	1827
70	1801
71	1723
72	1628
73	1560
74	1454
75	1489
76	1409
77	1344
78	1360
79	1311
80	1296
81	1191
82	1117
83	1105
84	1089
85	1067
86	998
87	1000
88	968
89	937
90	935
91	873
92	871
93	879
94	812
95	770
96	799
97	712
98	691
99	690
100	717
101	709
102	641
103	639
104	624
105	611
106	597
107	561
108	560
109	538
110	529
111	522
112	507
113	510
114	474
115	483
116	456
117	493
118	459
119	463
120	406
121	439
122	420
123	409
124	419
125	369
126	369
127	381
128	371
129	386
130	338
131	339
132	323
133	328
134	327
135	335
136	311
137	296
138	282
139	329
140	292
141	291
142	288
143	263
144	270
145	259
146	279
147	264
148	244
149	266
150	246
151	230
152	250
153	217
154	229
155	243
156	224
157	229
158	224
159	217
160	225
161	204
162	180
163	198
164	194
165	189
166	173
167	193
168	174
169	213
170	198
171	179
172	180
173	174
174	175
175	172
176	166
177	160
178	165
179	152
180	139
181	128
182	147
183	142
184	147
185	143
186	157
187	142
188	149
189	127
190	127
191	143
192	128
193	130
194	114
195	129
196	126
197	114
198	137
199	123
200	100
201	127
202	105
203	99
204	114
205	117
206	101
207	111
208	112
209	105
210	96
211	112
212	108
213	92
214	93
215	97
216	92
217	101
218	99
219	87
220	100
221	96
222	94
223	84
224	85
225	90
226	79
227	74
228	81
229	75
230	93
231	87
232	70
233	93
234	71
235	74
236	75
237	76
238	62
239	64
240	64
241	56
242	78
243	66
244	66
245	45
246	68
247	60
248	73
249	66
250	53
251	64
252	70
253	53
254	55
255	66
256	57
257	55
258	53
259	40
260	64
261	56
262	56
263	66
264	48
265	56
266	59
267	58
268	64
269	55
270	55
271	55
272	55
273	46
274	58
275	57
276	44
277	48
278	55
279	48
280	51
281	48
282	42
283	43
284	49
285	43
286	45
287	41
288	55
289	44
290	49
291	44
292	33
293	48
294	48
295	50
296	39
297	39
298	45
299	36
300	43
301	37
302	39
303	41
304	31
305	35
306	46
307	40
308	34
309	35
310	37
311	33
312	34
313	35
314	34
315	28
316	35
317	22
318	39
319	30
320	32
321	26
322	32
323	28
324	35
325	38
326	33
327	27
328	32
329	29
330	27
331	25
332	29
333	33
334	33
335	29
336	35
337	31
338	29
339	22
340	28
341	31
342	22
343	27
344	26
345	33
346	19
347	29
348	23
349	23
350	17
351	26
352	19
353	17
354	26
355	29
356	24
357	25
358	32
359	22
360	16
361	25
362	28
363	11
364	38
365	25
366	24
367	36
368	26
369	24
370	24
371	19
372	19
373	18
374	21
375	18
376	18
377	23
378	23
379	26
380	15
381	22
382	21
383	19
384	16
385	14
386	21
387	20
388	20
389	16
390	14
391	27
392	17
393	19
394	19
395	16
396	14
397	23
398	16
399	21
400	24
401	12
402	25
403	13
404	18
405	21
406	8
407	12
408	25
409	16
410	13
411	16
412	12
413	10
414	23
415	19
416	24
417	11
418	11
419	13
420	17
421	15
422	12
423	12
424	17
425	14
426	16
427	11
428	20
429	15
430	13
431	11
432	12
433	16
434	20
435	17
436	13
437	11
438	17
439	12
440	11
441	15
442	13
443	12
444	10
445	12
446	11
447	11
448	18
449	11
450	5
451	13
452	12
453	15
454	11
455	8
456	13
457	8
458	12
459	12
460	12
461	16
462	12
463	16
464	13
465	9
466	12
467	13
468	9
469	13
470	7
471	9
472	13
473	15
474	7
475	8
476	10
477	17
478	8
479	10
480	5
481	8
482	12
483	11
484	10
485	8
486	9
487	7
488	12
489	8
490	14
491	13
492	7
493	5
494	5
495	9
496	10
497	16
498	10
499	9
500	12
501	11
502	11
503	9
504	4
505	12
506	14
507	12
508	2
509	13
510	5
511	14
512	11
513	9
514	8
515	8
516	9
517	11
518	4
519	8
520	4
521	7
522	6
523	7
524	10
525	7
526	9
527	7
528	14
529	10
530	4
531	12
532	9
533	6
534	9
535	5
536	10
537	6
538	6
539	9
540	17
541	8
542	6
543	8
544	10
545	6
546	10
547	7
548	5
549	5
550	6
551	7
552	12
553	7
554	12
555	6
556	8
557	4
558	7
559	5
560	12
561	7
562	8
563	1
564	6
565	7
566	3
567	8
568	3
569	9
570	8
571	5
572	7
573	10
574	10
575	8
576	7
577	7
578	8
579	10
580	14
581	6
582	6
583	5
584	5
585	6
586	6
587	10
588	2
589	7
590	8
591	5
592	8
593	3
594	5
595	4
596	4
597	3
598	7
599	4
600	7
601	4
602	3
603	6
604	9
605	2
606	5
607	4
608	5
609	6
610	6
611	4
612	4
613	3
614	5
615	4
616	7
617	8
618	4
619	6
620	9
621	2
622	7
623	2
624	2
625	5
626	5
627	7
628	5
629	7
630	8
631	5
632	1
633	8
634	3
635	4
636	5
637	4
638	6
639	6
640	6
641	6
642	4
643	5
644	5
645	6
646	9
647	4
648	3
649	7
650	2
651	3
652	2
653	2
654	2
655	7
656	5
657	6
658	5
659	5
661	3
662	3
663	4
664	6
665	4
666	4
667	6
668	2
669	2
670	3
671	8
672	5
673	7
674	1
675	5
676	2
677	4
678	5
679	9
680	7
681	3
682	4
683	7
684	1
685	6
686	7
687	6
688	1
689	5
690	2
691	2
692	5
693	6
694	5
695	9
696	6
697	2
698	1
699	3
700	8
701	4
702	2
703	8
704	5
705	1
706	4
707	1
708	7
709	3
710	3
711	4
712	3
713	7
714	6
715	5
716	4
717	5
718	1
719	3
720	1
721	2
722	2
723	6
724	2
725	2
726	5
727	3
728	2
729	5
730	6
731	1
732	7
733	4
734	2
735	2
736	3
737	7
738	6
739	5
740	2
741	2
742	3
743	8
744	1
745	1
746	4
747	1
749	1
750	8
751	4
752	5
753	1
754	3
755	3
756	3
757	4
758	4
759	3
760	1
761	6
762	6
763	2
764	2
765	3
766	1
767	3
768	7
769	2
770	4
771	2
772	4
773	5
774	2
775	3
776	1
777	3
778	4
779	3
780	2
781	3
782	4
783	1
784	2
785	2
786	3
787	2
788	5
789	4
790	3
791	4
792	6
793	1
794	2
795	1
796	4
797	2
798	4
799	2
801	4
802	2
803	3
804	3
805	2
806	4
807	3
808	2
809	4
810	1
811	1
812	1
813	4
814	2
816	3
817	2
818	4
819	4
820	5
821	6
822	3
823	1
824	2
826	1
827	5
829	2
830	2
831	3
832	3
833	1
834	1
835	1
836	5
837	3
838	1
839	3
840	2
841	3
842	1
843	3
844	3
845	1
846	5
847	3
848	1
849	2
850	3
852	2
853	2
854	1
855	2
856	2
857	4
859	2
860	4
861	4
862	3
863	1
864	4
865	6
867	2
868	6
869	2
870	2
871	3
872	2
873	3
874	2
875	2
876	1
878	1
879	2
881	3
882	1
883	2
884	1
887	3
888	4
889	2
890	2
891	3
892	1
894	1
895	3
896	1
897	2
898	1
899	3
900	1
901	4
902	3
903	1
904	1
905	2
906	3
907	3
908	2
909	5
910	1
911	2
912	1
914	1
915	1
916	2
917	1
920	2
921	2
923	2
925	1
926	2
927	2
929	1
930	3
931	2
932	1
933	2
934	2
935	1
936	3
937	1
940	1
941	2
942	1
943	3
944	2
946	5
947	1
948	1
949	1
950	2
951	3
952	2
953	2
955	2
956	1
957	1
958	4
959	1
962	1
963	1
964	3
965	4
967	1
968	2
969	1
970	2
971	1
973	1
974	1
975	1
976	1
979	1
980	3
981	1
982	2
983	1
985	5
986	1
987	1
988	1
989	1
991	2
992	1
993	1
995	1
997	1
998	2
999	4
1001	1
1002	2
1003	1
1004	2
1005	3
1006	2
1007	1
1008	1
1009	2
1010	1
1012	2
1014	1
1015	1
1016	1
1017	3
1020	1
1021	2
1022	1
1024	1
1025	2
1026	2
1028	2
1030	1
1031	1
1034	3
1035	2
1038	1
1040	1
1041	1
1042	2
1043	2
1044	2
1045	1
1047	2
1048	2
1049	1
1050	1
1051	1
1052	5
1054	2
1056	1
1057	2
1058	1
1059	1
1060	1
1062	2
1064	1
1065	1
1066	1
1067	2
1069	1
1070	1
1071	3
1072	3
1073	1
1075	1
1076	1
1078	2
1079	1
1081	3
1082	1
1084	3
1086	1
1087	1
1088	2
1090	1
1091	1
1092	1
1094	3
1095	3
1097	1
1098	1
1099	1
1101	1
1102	2
1105	2
1106	3
1107	1
1108	1
1109	3
1110	2
1111	1
1112	1
1113	1
1114	1
1116	1
1118	1
1119	2
1120	2
1123	1
1124	2
1127	1
1128	1
1129	1
1130	1
1131	2
1136	2
1137	1
1138	1
1139	2
1140	3
1145	1
1147	2
1148	2
1150	2
1151	1
1155	2
1157	1
1158	2
1163	2
1166	1
1168	2
1173	1
1177	2
1178	1
1181	1
1182	3
1183	1
1185	2
1188	1
1191	1
1192	1
1193	2
1194	1
1195	2
1196	2
1198	2
1199	1
1200	2
1201	1
1203	1
1205	2
1208	4
1209	1
1210	3
1211	2
1212	1
1213	1
1214	1
1215	1
1219	1
1221	1
1222	1
1224	1
1227	1
1228	1
1231	1
1232	2
1237	1
1240	2
1241	2
1244	1
1245	1
1246	1
1247	1
1248	1
1249	1
1252	1
1253	1
1254	1
1255	2
1256	2
1258	2
1259	2
1261	3
1262	2
1265	1
1266	1
1268	1
1269	1
1271	1
1273	1
1274	1
1276	1
1277	2
1278	1
1279	2
1280	1
1281	2
1286	4
1290	1
1291	1
1292	2
1293	1
1294	1
1296	4
1298	1
1299	2
1301	1
1304	2
1308	2
1310	3
1316	1
1318	1
1321	1
1322	1
1323	2
1325	1
1327	1
1330	1
1331	1
1332	2
1333	2
1335	2
1337	1
1338	1
1339	2
1341	1
1344	1
1346	2
1352	2
1355	1
1356	1
1357	1
1365	1
1367	2
1368	1
1370	1
1372	1
1375	1
1376	1
1378	1
1380	1
1381	2
1383	1
1384	2
1386	1
1388	2
1389	2
1391	3
1392	1
1395	1
1397	1
1400	1
1402	2
1405	1
1406	1
1407	1
1409	1
1411	1
1412	1
1413	1
1414	1
1416	1
1418	2
1424	2
1425	2
1428	1
1431	2
1434	1
1438	1
1440	1
1449	1
1450	1
1460	1
1461	1
1462	1
1464	1
1467	1
1471	1
1474	1
1475	1
1476	2
1479	2
1486	1
1487	1
1491	1
1493	1
1496	1
1498	1
1502	1
1503	1
1506	1
1507	2
1509	1
1513	1
1514	2
1520	1
1522	1
1523	3
1526	1
1535	1
1536	1
1539	1
1540	2
1548	2
1550	1
1552	2
1555	1
1557	1
1558	1
1559	1
1564	1
1567	1
1568	2
1569	1
1576	1
1577	1
1579	1
1582	1
1594	1
1596	2
1597	1
1598	1
1601	1
1602	1
1603	1
1604	2
1605	2
1609	1
1611	1
1618	1
1620	1
1626	1
1631	1
1638	1
1640	1
1642	1
1645	1
1650	1
1656	2
1663	2
1667	1
1668	1
1671	1
1673	1
1676	1
1680	1
1681	2
1683	1
1684	1
1689	1
1690	1
1691	2
1698	1
1707	2
1710	1
1711	1
1717	1
1719	1
1723	1
1737	1
1738	1
1744	1
1748	1
1751	1
1753	1
1757	1
1760	1
1770	1
1772	1
1773	1
1781	1
1783	1
1787	1
1788	1
1789	1
1790	1
1791	1
1803	1
1804	1
1806	1
1809	1
1813	1
1821	2
1842	1
1849	1
1853	2
1854	1
1857	1
1864	1
1866	1
1869	1
1871	1
1875	1
1882	1
1891	1
1895	1
1897	1
1908	1
1911	1
1916	1
1922	1
1924	1
1930	1
1938	1
1939	1
1946	1
1952	1
1962	1
1968	1
1971	1
1975	1
1976	1
1980	1
1986	1
2000	1
2004	1
2013	1
2016	1
2017	1
2024	1
2027	1
2046	1
2047	1
2049	1
2053	2
2057	1
2070	1
2078	1
2091	1
2098	1
2108	1
2112	1
2118	1
2127	1
2134	1
2144	1
2157	1
2200	1
2205	1
2210	1
2235	1
2258	1
2267	1
2274	1
2287	1
2290	1
2300	1
2313	1
2314	1
2326	1
2340	1
2343	1
2349	1
2354	1
2364	1
2375	1
2429	1
2433	1
2457	1
2467	1
2478	1
2495	1
2496	1
2581	1
2596	2
2606	1
2625	1
2637	1
2638	1
2648	2
2692	1
2711	1
2721	1
2738	1
2746	1
2752	1
2762	1
2766	1
2770	1
2796	1
2818	1
2819	1
2829	1
2830	1
2843	1
2898	1
2908	1
2915	1
2921	1
2953	1
2964	1
3027	1
3048	1
3099	1
3104	1
3152	1
3222	1
3245	1
3267	1
3351	1
3375	1
3408	1
3420	1
3442	1
3607	1
3610	1
4059	1
4205	1
4216	1
4296	1
4310	1
4412	1
4489	1
4568	1
4578	1
4579	1
4635	1
4894	1
4899	1
6764	1
6794	1
7134	1
7317	1
7605	1
8398	1
12687	1
14639	1
25140	1
1051028	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...................................................................._...
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]