Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/a2efdd1c895b7bf3d498ccc0a192ac/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/532599d28749e30d1586ca59231bbe/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/532599d28749e30d1586ca59231bbe/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:38:02.970 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:38:03 GMT 2026] MarkDuplicates --INPUT BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:38:03 GMT 2026] Executing as ?@nf-7d532599d28749e30d1586ca59231bbe-491c0-vdzwv on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:38:03 MarkDuplicates Start of doWork freeMemory: 105828776; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:38:03 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:38:03 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,652,504
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 2102 as yet unmatched pairs. 35 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:8,359,808
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 4408 as yet unmatched pairs. 1 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:12,011,525
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 6664 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:16,666,863
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 8774 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:20,942,197
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 11010 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,495
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 13111 as yet unmatched pairs. 14 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:25,246,924
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 15198 as yet unmatched pairs. 22 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 3s. Last read position: chr1:27,882,439
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 17355 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:31,918,998
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 19925 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:35,448,200
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 22056 as yet unmatched pairs. 130 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:39,353,026
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 24174 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:42,830,955
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 26319 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:45,583,900
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 28540 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:52,772,355
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 30583 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:64,177,501
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 32574 as yet unmatched pairs. 8 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:86,386,830
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 34507 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:97,920,917
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 36488 as yet unmatched pairs. 8 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 3s. Last read position: chr1:109,235,936
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 38548 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:112,703,667
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 40792 as yet unmatched pairs. 207 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:116,600,105
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 42548 as yet unmatched pairs. 23 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:119,923,689
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 44859 as yet unmatched pairs. 337 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 3s. Last read position: chr1:120,005,389
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 46866 as yet unmatched pairs. 353 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:144,437,946
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 47615 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:146,102,950
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 48687 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:147,936,640
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 49704 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:148,615,890
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 50169 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:149,832,918
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 51040 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:150,308,063
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 52655 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:150,966,809
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 55022 as yet unmatched pairs. 463 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:151,562,656
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 56797 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:153,953,292
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 58992 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:154,254,853
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 60865 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 4s. Last read position: chr1:155,015,147
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 62780 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:155,189,509
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 64795 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:155,343,708
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 66540 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:155,951,047
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 68359 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:156,335,852
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 70904 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:159,918,601
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 73038 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 4s. Last read position: chr1:161,051,704
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 75058 as yet unmatched pairs. 19 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:161,543,055
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 77896 as yet unmatched pairs. 1039 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:165,652,024
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 78884 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:169,477,267
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 81400 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:173,716,002
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 82816 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 3s. Last read position: chr1:180,166,515
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 85239 as yet unmatched pairs. 471 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:183,546,017
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 86934 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:186,346,200
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 89808 as yet unmatched pairs. 1110 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr1:200,847,236
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 90549 as yet unmatched pairs. 110 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr1:202,966,573
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 92591 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr1:204,618,964
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 94359 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 4s. Last read position: chr1:207,887,507
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 96285 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr1:214,642,964
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 98288 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr1:221,739,408
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 100235 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr1:225,497,651
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 102386 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 3s. Last read position: chr1:226,888,893
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 104119 as yet unmatched pairs. 66 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr1:229,326,882
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 106367 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr1:234,608,633
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 108674 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr1:243,221,723
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 110697 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr1:247,310,320
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 112917 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 4s. Last read position: chr2:11,616,682
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 114934 as yet unmatched pairs. 114704 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:24,758,045
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 117055 as yet unmatched pairs. 116822 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:28,412,299
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 119504 as yet unmatched pairs. 119268 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,260
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 164482 as yet unmatched pairs. 119359 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 745594 as yet unmatched pairs. 105957 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 980248 as yet unmatched pairs. 101127 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:36,861,147
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 1043214 as yet unmatched pairs. 99405 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:43,571,628
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 1041298 as yet unmatched pairs. 97488 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:54,668,450
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 1039064 as yet unmatched pairs. 95248 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:61,311,900
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 1037099 as yet unmatched pairs. 93281 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr2:69,914,886
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 1035002 as yet unmatched pairs. 91183 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:74,464,908
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 1032966 as yet unmatched pairs. 89144 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:86,720,730
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 1030793 as yet unmatched pairs. 86966 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 3s. Last read position: chr2:96,297,490
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 1029151 as yet unmatched pairs. 85320 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:99,408,078
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 1027099 as yet unmatched pairs. 83266 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:107,872,339
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 1025462 as yet unmatched pairs. 81608 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:109,898,724
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 1024127 as yet unmatched pairs. 80271 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:113,227,220
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 1022942 as yet unmatched pairs. 79085 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr2:128,145,809
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 1021210 as yet unmatched pairs. 77347 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 3s. Last read position: chr2:131,629,448
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 1019711 as yet unmatched pairs. 75836 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr2:151,512,746
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 1017906 as yet unmatched pairs. 74026 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:151,640,405
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 1016555 as yet unmatched pairs. 72674 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 3s. Last read position: chr2:159,432,770
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 1014294 as yet unmatched pairs. 70404 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 4s. Last read position: chr2:170,752,112
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 1012382 as yet unmatched pairs. 68491 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr2:177,219,592
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 1011805 as yet unmatched pairs. 67899 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr2:178,542,780
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 1009116 as yet unmatched pairs. 65208 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr2:178,562,457
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 1006842 as yet unmatched pairs. 62933 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 3s. Last read position: chr2:178,576,983
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 1004892 as yet unmatched pairs. 60982 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 3s. Last read position: chr2:178,599,319
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 1002895 as yet unmatched pairs. 58984 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr2:178,622,684
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 1000800 as yet unmatched pairs. 56888 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr2:178,681,079
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 999638 as yet unmatched pairs. 55724 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr2:178,727,130
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 997651 as yet unmatched pairs. 53737 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr2:178,776,668
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 995425 as yet unmatched pairs. 51511 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 4s. Last read position: chr2:186,504,076
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 993318 as yet unmatched pairs. 49404 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr2:188,996,125
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 992309 as yet unmatched pairs. 48394 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr2:189,009,016
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 990495 as yet unmatched pairs. 46579 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr2:189,580,417
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 986513 as yet unmatched pairs. 42593 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr2:200,815,675
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 984795 as yet unmatched pairs. 40874 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr2:206,149,825
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 982833 as yet unmatched pairs. 38904 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,613
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 984704 as yet unmatched pairs. 40773 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr2:215,370,345
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 987505 as yet unmatched pairs. 43569 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,293
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 980578 as yet unmatched pairs. 36642 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,706
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 977924 as yet unmatched pairs. 33986 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 3s. Last read position: chr2:215,379,256
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 979485 as yet unmatched pairs. 35547 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 3s. Last read position: chr2:215,384,859
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 973443 as yet unmatched pairs. 29495 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr2:215,391,745
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 975319 as yet unmatched pairs. 31370 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr2:215,399,260
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 968862 as yet unmatched pairs. 24913 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr2:215,407,244
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 967793 as yet unmatched pairs. 23844 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,996
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 966499 as yet unmatched pairs. 22549 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr2:215,422,165
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 963472 as yet unmatched pairs. 19522 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr2:215,428,287
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 962150 as yet unmatched pairs. 18199 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr2:215,944,870
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 957193 as yet unmatched pairs. 13236 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 2s. Last read position: chr2:219,182,315
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 955171 as yet unmatched pairs. 11214 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr2:227,531,194
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 952752 as yet unmatched pairs. 8769 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr2:232,790,721
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 950764 as yet unmatched pairs. 6781 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 3s. Last read position: chr2:237,363,302
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 948849 as yet unmatched pairs. 4864 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 3s. Last read position: chr2:238,061,127
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 946433 as yet unmatched pairs. 2447 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr2:241,676,139
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 944199 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 3s. Last read position: chr3:10,146,579
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 941948 as yet unmatched pairs. 54694 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 2s. Last read position: chr3:14,820,280
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 939703 as yet unmatched pairs. 52448 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr3:32,491,667
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 937936 as yet unmatched pairs. 50675 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr3:39,329,807
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 935911 as yet unmatched pairs. 48650 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr3:44,401,216
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 933888 as yet unmatched pairs. 46627 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr3:47,610,066
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 931742 as yet unmatched pairs. 44480 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr3:48,964,955
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 929655 as yet unmatched pairs. 42392 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr3:49,360,249
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 927589 as yet unmatched pairs. 40325 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr3:50,330,464
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 925129 as yet unmatched pairs. 37865 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 4s. Last read position: chr3:52,516,746
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 923163 as yet unmatched pairs. 35893 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr3:57,757,639
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 921010 as yet unmatched pairs. 33734 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 2s. Last read position: chr3:67,498,279
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 918894 as yet unmatched pairs. 31616 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr3:99,849,097
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 917037 as yet unmatched pairs. 29753 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr3:105,720,110
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 914940 as yet unmatched pairs. 27654 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr3:119,447,028
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 913018 as yet unmatched pairs. 25730 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 3s. Last read position: chr3:122,695,515
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 911291 as yet unmatched pairs. 23992 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 3s. Last read position: chr3:127,781,852
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 909050 as yet unmatched pairs. 21746 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr3:129,570,895
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 906959 as yet unmatched pairs. 19651 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr3:134,537,162
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 904688 as yet unmatched pairs. 17372 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr3:142,512,288
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 902699 as yet unmatched pairs. 15378 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr3:154,292,561
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 900671 as yet unmatched pairs. 13334 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr3:170,128,894
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 898803 as yet unmatched pairs. 11461 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 4s. Last read position: chr3:179,719,949
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 896603 as yet unmatched pairs. 9258 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr3:184,301,626
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 894560 as yet unmatched pairs. 7212 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr3:185,417,560
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 892066 as yet unmatched pairs. 4716 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr3:194,450,244
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 890204 as yet unmatched pairs. 2848 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr3:197,225,911
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 888069 as yet unmatched pairs. 707 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr4:1,728,573
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 885689 as yet unmatched pairs. 26715 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 4s. Last read position: chr4:3,293,380
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 883435 as yet unmatched pairs. 24459 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr4:13,576,859
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 881283 as yet unmatched pairs. 22288 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr4:39,062,706
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 879412 as yet unmatched pairs. 20413 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr4:53,428,099
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 877398 as yet unmatched pairs. 18394 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 3s. Last read position: chr4:73,091,350
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 875463 as yet unmatched pairs. 16452 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr4:78,911,066
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 873509 as yet unmatched pairs. 14491 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 2s. Last read position: chr4:87,982,518
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 872322 as yet unmatched pairs. 13295 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr4:106,999,779
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 869843 as yet unmatched pairs. 10816 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr4:122,347,588
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 867990 as yet unmatched pairs. 8962 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr4:140,677,000
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 866173 as yet unmatched pairs. 7138 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr4:151,104,177
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 865242 as yet unmatched pairs. 6200 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr4:158,672,407
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 861962 as yet unmatched pairs. 2917 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr4:183,315,579
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 860029 as yet unmatched pairs. 979 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 3s. Last read position: chr5:5,457,670
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 857938 as yet unmatched pairs. 58831 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr5:14,368,790
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 856087 as yet unmatched pairs. 56978 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr5:31,406,869
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 853833 as yet unmatched pairs. 54723 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 3s. Last read position: chr5:37,058,981
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 851824 as yet unmatched pairs. 52714 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 3s. Last read position: chr5:44,809,398
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 849981 as yet unmatched pairs. 50868 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 2s. Last read position: chr5:61,544,215
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 847907 as yet unmatched pairs. 48788 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 2s. Last read position: chr5:69,504,194
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 846049 as yet unmatched pairs. 46928 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr5:70,527,452
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 845427 as yet unmatched pairs. 46298 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr5:72,194,930
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 844254 as yet unmatched pairs. 45122 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 2s. Last read position: chr5:79,623,368
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 842509 as yet unmatched pairs. 43360 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 4s. Last read position: chr5:83,545,549
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 840661 as yet unmatched pairs. 41508 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr5:96,979,215
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 838675 as yet unmatched pairs. 39519 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr5:113,013,336
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 836787 as yet unmatched pairs. 37624 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr5:131,162,603
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 834984 as yet unmatched pairs. 35814 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr5:134,661,228
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 832728 as yet unmatched pairs. 33557 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 2s. Last read position: chr5:135,571,074
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 845374 as yet unmatched pairs. 46201 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 3s. Last read position: chr5:135,578,726
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 830961 as yet unmatched pairs. 31787 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 3s. Last read position: chr5:138,435,568
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 826125 as yet unmatched pairs. 26949 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 2s. Last read position: chr5:140,526,355
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 824161 as yet unmatched pairs. 24901 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr5:141,516,995
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 822233 as yet unmatched pairs. 22971 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr5:149,345,564
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 820124 as yet unmatched pairs. 20861 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,095
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 820484 as yet unmatched pairs. 21219 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr5:150,403,238
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 819258 as yet unmatched pairs. 19991 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr5:150,406,308
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 821157 as yet unmatched pairs. 21889 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 2s. Last read position: chr5:151,134,426
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 811798 as yet unmatched pairs. 12514 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr5:157,180,940
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 809588 as yet unmatched pairs. 10292 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr5:171,392,777
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 809345 as yet unmatched pairs. 10043 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 3s. Last read position: chr5:176,651,852
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 805554 as yet unmatched pairs. 6251 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 2s. Last read position: chr5:178,613,530
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 803505 as yet unmatched pairs. 4202 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr5:179,824,042
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 801633 as yet unmatched pairs. 2329 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr5:181,243,702
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 799888 as yet unmatched pairs. 584 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 3s. Last read position: chr6:7,402,705
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 797255 as yet unmatched pairs. 47693 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr6:17,393,720
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 795254 as yet unmatched pairs. 45685 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr6:26,199,019
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 793377 as yet unmatched pairs. 43806 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr6:29,944,350
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 792186 as yet unmatched pairs. 42615 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr6:30,926,141
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 789385 as yet unmatched pairs. 39813 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 3s. Last read position: chr6:31,635,730
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 787398 as yet unmatched pairs. 37826 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr6:31,816,944
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 785895 as yet unmatched pairs. 36322 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr6:31,882,762
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 784216 as yet unmatched pairs. 34642 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 2s. Last read position: chr6:32,016,327
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 783928 as yet unmatched pairs. 34344 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr6:32,443,449
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 782102 as yet unmatched pairs. 32514 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr6:33,085,176
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 779219 as yet unmatched pairs. 29631 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr6:33,455,718
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 776955 as yet unmatched pairs. 27367 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr6:36,919,674
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 774885 as yet unmatched pairs. 25286 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 2s. Last read position: chr6:43,129,795
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 772444 as yet unmatched pairs. 22845 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr6:46,871,884
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 770283 as yet unmatched pairs. 20683 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr6:56,639,272
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 768550 as yet unmatched pairs. 18943 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 3s. Last read position: chr6:75,143,289
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 766826 as yet unmatched pairs. 17205 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 3s. Last read position: chr6:84,169,349
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 764483 as yet unmatched pairs. 14862 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr6:107,871,757
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 762480 as yet unmatched pairs. 12854 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr6:117,907,178
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 760638 as yet unmatched pairs. 11003 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr6:136,277,879
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 758716 as yet unmatched pairs. 9078 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr6:149,683,327
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 756786 as yet unmatched pairs. 7148 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr6:152,061,027
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 758333 as yet unmatched pairs. 8693 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr6:158,783,562
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 753065 as yet unmatched pairs. 3424 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr6:167,951,339
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 750600 as yet unmatched pairs. 953 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 3s. Last read position: chr7:2,520,092
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 748246 as yet unmatched pairs. 49200 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr7:5,527,694
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 746914 as yet unmatched pairs. 47867 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr7:5,593,637
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 743551 as yet unmatched pairs. 44502 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 2s. Last read position: chr7:17,309,936
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 741745 as yet unmatched pairs. 42694 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr7:29,944,162
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 739876 as yet unmatched pairs. 40818 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr7:43,961,590
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 737846 as yet unmatched pairs. 38787 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr7:44,799,798
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 736267 as yet unmatched pairs. 37206 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr7:66,606,773
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 733833 as yet unmatched pairs. 34769 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr7:73,478,264
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 732825 as yet unmatched pairs. 33758 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr7:75,418,860
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 731364 as yet unmatched pairs. 32296 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr7:76,304,072
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 729873 as yet unmatched pairs. 30805 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr7:87,188,254
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 727477 as yet unmatched pairs. 28407 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr7:92,102,761
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 726345 as yet unmatched pairs. 27275 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr7:94,408,353
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 724311 as yet unmatched pairs. 25239 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 2s. Last read position: chr7:94,425,654
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 722033 as yet unmatched pairs. 22961 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 2s. Last read position: chr7:98,935,577
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 718926 as yet unmatched pairs. 19846 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr7:100,220,963
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 716809 as yet unmatched pairs. 17728 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr7:101,816,047
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 714679 as yet unmatched pairs. 15596 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr7:102,637,524
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 713879 as yet unmatched pairs. 14795 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr7:107,179,974
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 712300 as yet unmatched pairs. 13213 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr7:127,374,192
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 710361 as yet unmatched pairs. 11263 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr7:129,834,927
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 708431 as yet unmatched pairs. 9333 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr7:138,894,331
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 706654 as yet unmatched pairs. 7556 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr7:143,382,598
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 704775 as yet unmatched pairs. 5670 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr7:149,266,599
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 703072 as yet unmatched pairs. 3967 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr7:152,176,201
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 700766 as yet unmatched pairs. 1659 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 3s. Last read position: chr8:9,580,203
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 698663 as yet unmatched pairs. 39354 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 3s. Last read position: chr8:18,216,960
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 696876 as yet unmatched pairs. 37567 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr8:26,624,268
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 694561 as yet unmatched pairs. 35252 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr8:38,267,381
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 692280 as yet unmatched pairs. 32968 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr8:41,933,145
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 690230 as yet unmatched pairs. 30913 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr8:47,902,711
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 688585 as yet unmatched pairs. 29266 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr8:61,642,906
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 686430 as yet unmatched pairs. 27111 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr8:70,162,830
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 684460 as yet unmatched pairs. 25128 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr8:86,411,543
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 682502 as yet unmatched pairs. 23168 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 2s. Last read position: chr8:98,042,643
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 680936 as yet unmatched pairs. 21601 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr8:100,943,655
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 678568 as yet unmatched pairs. 19223 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr8:115,414,081
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 678151 as yet unmatched pairs. 18806 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr8:115,620,008
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 675386 as yet unmatched pairs. 16037 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 98s. Last read position: chr8:125,431,062
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 672226 as yet unmatched pairs. 12870 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr8:142,331,805
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 670054 as yet unmatched pairs. 10691 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,839,357
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 667650 as yet unmatched pairs. 8284 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,720
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 667003 as yet unmatched pairs. 7637 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,948
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 666109 as yet unmatched pairs. 6743 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,927
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 664046 as yet unmatched pairs. 4679 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr8:144,311,213
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 661437 as yet unmatched pairs. 2070 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr9:463,649
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 659133 as yet unmatched pairs. 34937 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr9:18,770,720
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 657237 as yet unmatched pairs. 33037 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr9:33,675,206
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 655222 as yet unmatched pairs. 31022 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr9:35,725,251
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 653087 as yet unmatched pairs. 28882 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr9:69,718,517
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 651379 as yet unmatched pairs. 27149 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr9:86,945,753
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 649466 as yet unmatched pairs. 25235 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr9:93,529,469
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 647639 as yet unmatched pairs. 23405 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr9:104,818,833
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 645387 as yet unmatched pairs. 21153 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr9:113,197,045
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 643247 as yet unmatched pairs. 19011 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr9:121,098,487
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 641166 as yet unmatched pairs. 16928 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr9:125,020,672
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 639102 as yet unmatched pairs. 14861 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr9:127,950,473
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 637118 as yet unmatched pairs. 12876 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr9:129,008,740
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 634856 as yet unmatched pairs. 10614 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr9:131,478,522
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 632501 as yet unmatched pairs. 8255 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr9:134,157,902
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 630408 as yet unmatched pairs. 6162 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr9:136,475,208
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 628374 as yet unmatched pairs. 4125 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr9:137,189,122
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 625799 as yet unmatched pairs. 1544 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr10:3,166,242
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 623652 as yet unmatched pairs. 33606 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr10:8,073,934
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 622203 as yet unmatched pairs. 32153 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr10:22,326,550
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 619842 as yet unmatched pairs. 29788 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr10:31,810,639
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 617751 as yet unmatched pairs. 27697 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr10:32,932,543
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 616521 as yet unmatched pairs. 26466 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr10:43,114,515
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 614553 as yet unmatched pairs. 24497 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr10:46,006,559
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 611935 as yet unmatched pairs. 21879 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr10:58,388,206
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 610367 as yet unmatched pairs. 20309 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 3s. Last read position: chr10:70,139,967
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 608468 as yet unmatched pairs. 18409 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr10:73,912,999
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 606459 as yet unmatched pairs. 16400 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr10:79,711,883
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 604471 as yet unmatched pairs. 14405 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 2s. Last read position: chr10:89,306,030
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 602676 as yet unmatched pairs. 12610 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr10:95,868,540
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 600769 as yet unmatched pairs. 10701 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr10:101,006,753
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 598587 as yet unmatched pairs. 8516 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 2s. Last read position: chr10:103,735,796
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 596583 as yet unmatched pairs. 6510 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr10:116,948,974
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 594986 as yet unmatched pairs. 4909 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr10:122,428,246
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 592637 as yet unmatched pairs. 2560 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr10:133,263,735
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 590585 as yet unmatched pairs. 499 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 3s. Last read position: chr11:314,961
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 589787 as yet unmatched pairs. 67227 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr11:794,977
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 586009 as yet unmatched pairs. 63448 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr11:2,390,457
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 583901 as yet unmatched pairs. 61333 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr11:6,615,178
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 581626 as yet unmatched pairs. 59058 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr11:10,799,313
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 579925 as yet unmatched pairs. 57357 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr11:17,169,346
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 577584 as yet unmatched pairs. 55011 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr11:33,710,252
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 576550 as yet unmatched pairs. 53976 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 2s. Last read position: chr11:46,278,118
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 574111 as yet unmatched pairs. 51536 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr11:47,582,149
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 571580 as yet unmatched pairs. 49004 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr11:57,811,424
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 569897 as yet unmatched pairs. 47319 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr11:61,810,804
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 567303 as yet unmatched pairs. 44712 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 2s. Last read position: chr11:62,273,009
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 565379 as yet unmatched pairs. 42786 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 2s. Last read position: chr11:62,523,191
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 564087 as yet unmatched pairs. 41494 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr11:62,529,151
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 562492 as yet unmatched pairs. 39899 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 2s. Last read position: chr11:62,597,391
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 559846 as yet unmatched pairs. 37252 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr11:64,197,363
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 557678 as yet unmatched pairs. 35081 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr11:65,120,980
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 555859 as yet unmatched pairs. 33261 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 2s. Last read position: chr11:65,655,741
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 552869 as yet unmatched pairs. 30271 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr11:66,639,973
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 550658 as yet unmatched pairs. 28055 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr11:68,429,651
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 548124 as yet unmatched pairs. 25520 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr11:71,118,964
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 546152 as yet unmatched pairs. 23546 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 2s. Last read position: chr11:72,705,815
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 543914 as yet unmatched pairs. 21306 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr11:74,969,593
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 541777 as yet unmatched pairs. 19169 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 2s. Last read position: chr11:76,194,617
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 539106 as yet unmatched pairs. 16497 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 2s. Last read position: chr11:77,622,605
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 537599 as yet unmatched pairs. 14990 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 2s. Last read position: chr11:78,112,750
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 536098 as yet unmatched pairs. 13488 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 2s. Last read position: chr11:85,745,729
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 533272 as yet unmatched pairs. 10660 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 2s. Last read position: chr11:102,362,937
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 531387 as yet unmatched pairs. 8766 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 2s. Last read position: chr11:117,203,354
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 529357 as yet unmatched pairs. 6736 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 2s. Last read position: chr11:119,051,103
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 527062 as yet unmatched pairs. 4441 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 2s. Last read position: chr11:123,061,208
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 525229 as yet unmatched pairs. 2607 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 2s. Last read position: chr11:131,911,638
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 522904 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 3s. Last read position: chr12:2,679,559
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 520882 as yet unmatched pairs. 76053 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 2s. Last read position: chr12:6,390,705
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 518943 as yet unmatched pairs. 74103 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 2s. Last read position: chr12:6,937,382
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 516733 as yet unmatched pairs. 71893 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr12:9,112,159
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 514795 as yet unmatched pairs. 69955 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 2s. Last read position: chr12:13,214,561
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 512491 as yet unmatched pairs. 67650 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr12:26,682,022
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 510582 as yet unmatched pairs. 65738 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 2s. Last read position: chr12:40,412,101
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 509255 as yet unmatched pairs. 64409 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 2s. Last read position: chr12:40,465,562
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 507080 as yet unmatched pairs. 62234 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 2s. Last read position: chr12:40,484,063
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 505230 as yet unmatched pairs. 60384 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 2s. Last read position: chr12:40,486,760
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 505244 as yet unmatched pairs. 60397 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 2s. Last read position: chr12:40,488,282
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 502099 as yet unmatched pairs. 57252 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 2s. Last read position: chr12:40,490,209
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 500316 as yet unmatched pairs. 55469 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr12:40,521,669
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 497182 as yet unmatched pairs. 52335 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr12:40,547,149
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 495072 as yet unmatched pairs. 50225 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 2s. Last read position: chr12:45,922,973
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 492628 as yet unmatched pairs. 47776 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 2s. Last read position: chr12:48,845,644
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 490790 as yet unmatched pairs. 45938 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 2s. Last read position: chr12:49,185,047
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 488912 as yet unmatched pairs. 44059 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 2s. Last read position: chr12:50,678,718
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 486831 as yet unmatched pairs. 41977 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 2s. Last read position: chr12:53,022,508
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 484755 as yet unmatched pairs. 39900 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 2s. Last read position: chr12:53,669,192
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 483034 as yet unmatched pairs. 38178 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 2s. Last read position: chr12:55,968,815
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 480758 as yet unmatched pairs. 35902 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 2s. Last read position: chr12:56,163,677
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 478800 as yet unmatched pairs. 33944 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr12:56,666,252
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 477239 as yet unmatched pairs. 32383 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr12:57,108,197
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 474624 as yet unmatched pairs. 29767 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr12:57,490,530
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 472294 as yet unmatched pairs. 27435 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 2s. Last read position: chr12:64,222,110
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 470164 as yet unmatched pairs. 25304 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 2s. Last read position: chr12:70,353,855
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 468294 as yet unmatched pairs. 23425 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 2s. Last read position: chr12:91,108,469
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 466688 as yet unmatched pairs. 21818 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 2s. Last read position: chr12:98,593,986
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 464638 as yet unmatched pairs. 19768 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 2s. Last read position: chr12:102,959,477
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 462707 as yet unmatched pairs. 17837 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr12:108,623,265
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 460638 as yet unmatched pairs. 15767 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 2s. Last read position: chr12:111,447,735
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 458464 as yet unmatched pairs. 13593 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 2s. Last read position: chr12:112,978,585
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 456351 as yet unmatched pairs. 11479 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 2s. Last read position: chr12:118,239,243
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 454343 as yet unmatched pairs. 9464 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 2s. Last read position: chr12:121,249,705
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 452167 as yet unmatched pairs. 7285 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 2s. Last read position: chr12:122,981,634
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 451031 as yet unmatched pairs. 6148 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 2s. Last read position: chr12:124,567,602
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 448113 as yet unmatched pairs. 3228 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 2s. Last read position: chr12:132,701,344
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 445913 as yet unmatched pairs. 1028 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 2s. Last read position: chr13:23,358,381
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 443733 as yet unmatched pairs. 11763 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 2s. Last read position: chr13:36,825,411
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 441948 as yet unmatched pairs. 9974 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr13:43,969,927
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 439991 as yet unmatched pairs. 8017 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr13:52,030,740
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 438017 as yet unmatched pairs. 6041 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 2s. Last read position: chr13:97,989,074
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 436020 as yet unmatched pairs. 4041 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 2s. Last read position: chr13:110,436,280
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 433761 as yet unmatched pairs. 1780 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 2s. Last read position: chr14:20,400,996
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 431668 as yet unmatched pairs. 35413 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 2s. Last read position: chr14:22,841,978
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 429674 as yet unmatched pairs. 33419 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr14:23,565,765
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 427336 as yet unmatched pairs. 31080 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr14:24,440,267
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 425410 as yet unmatched pairs. 29153 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 2s. Last read position: chr14:35,627,656
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 423466 as yet unmatched pairs. 27209 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 2s. Last read position: chr14:49,784,669
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 421366 as yet unmatched pairs. 25107 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 2s. Last read position: chr14:55,062,672
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 419619 as yet unmatched pairs. 23358 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr14:60,879,768
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 417627 as yet unmatched pairs. 21364 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr14:65,611,224
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 415669 as yet unmatched pairs. 19406 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr14:69,771,208
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 413646 as yet unmatched pairs. 17383 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr14:74,555,659
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 411575 as yet unmatched pairs. 15305 records in RAM.
INFO 2026-06-08 08:56:20 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr14:77,710,843
INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 409673 as yet unmatched pairs. 13397 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr14:92,154,431
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 407463 as yet unmatched pairs. 11182 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr14:95,115,667
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 405478 as yet unmatched pairs. 9196 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr14:100,141,186
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 404902 as yet unmatched pairs. 8598 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr14:102,209,274
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 401288 as yet unmatched pairs. 4981 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 2s. Last read position: chr14:104,801,585
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 398954 as yet unmatched pairs. 2646 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr14:105,707,976
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 396989 as yet unmatched pairs. 679 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr15:24,978,191
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 395526 as yet unmatched pairs. 26324 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 2s. Last read position: chr15:32,732,698
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 394018 as yet unmatched pairs. 24815 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 2s. Last read position: chr15:39,967,479
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 391921 as yet unmatched pairs. 22714 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 2s. Last read position: chr15:41,821,052
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 389672 as yet unmatched pairs. 20463 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr15:43,769,615
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 388096 as yet unmatched pairs. 18886 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr15:48,463,096
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 385719 as yet unmatched pairs. 16509 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr15:55,359,995
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 383585 as yet unmatched pairs. 14374 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 2s. Last read position: chr15:61,910,209
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 381499 as yet unmatched pairs. 12288 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr15:65,599,820
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 379655 as yet unmatched pairs. 10442 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 2s. Last read position: chr15:71,898,700
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 377591 as yet unmatched pairs. 8377 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 2s. Last read position: chr15:75,339,961
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 375226 as yet unmatched pairs. 6004 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 2s. Last read position: chr15:82,372,571
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 373276 as yet unmatched pairs. 4052 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr15:90,230,335
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 371297 as yet unmatched pairs. 2072 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr16:14,703
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 369237 as yet unmatched pairs. 58621 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr16:670,937
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 366917 as yet unmatched pairs. 56300 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 2s. Last read position: chr16:1,367,753
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 364336 as yet unmatched pairs. 53714 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 2s. Last read position: chr16:2,036,773
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 361669 as yet unmatched pairs. 51046 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 2s. Last read position: chr16:2,283,186
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 359243 as yet unmatched pairs. 48620 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 2s. Last read position: chr16:2,766,836
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 357339 as yet unmatched pairs. 46715 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 2s. Last read position: chr16:3,602,186
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 354862 as yet unmatched pairs. 44237 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 2s. Last read position: chr16:4,801,560
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 352651 as yet unmatched pairs. 42024 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr16:11,733,950
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 350618 as yet unmatched pairs. 39991 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr16:14,765,004
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 348969 as yet unmatched pairs. 38342 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr16:15,009,680
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 348426 as yet unmatched pairs. 37797 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr16:16,265,318
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 346584 as yet unmatched pairs. 35955 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr16:16,358,660
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 346557 as yet unmatched pairs. 35928 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr16:18,348,487
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 345879 as yet unmatched pairs. 35250 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr16:18,418,468
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 344745 as yet unmatched pairs. 34116 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 2s. Last read position: chr16:19,183,528
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 343005 as yet unmatched pairs. 32374 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr16:21,418,720
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 342062 as yet unmatched pairs. 31431 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr16:21,851,797
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 341087 as yet unmatched pairs. 30456 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr16:22,532,111
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 340476 as yet unmatched pairs. 29845 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr16:24,790,329
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 339222 as yet unmatched pairs. 28591 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr16:28,608,747
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 337315 as yet unmatched pairs. 26683 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,183
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 335995 as yet unmatched pairs. 25356 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr16:29,545,258
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 335617 as yet unmatched pairs. 24977 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr16:30,070,224
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 333281 as yet unmatched pairs. 22639 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr16:30,335,013
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 331943 as yet unmatched pairs. 21301 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr16:30,739,541
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 329699 as yet unmatched pairs. 19057 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr16:31,190,064
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 327624 as yet unmatched pairs. 16974 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr16:50,633,652
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 325465 as yet unmatched pairs. 14811 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr16:57,039,810
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 323456 as yet unmatched pairs. 12802 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr16:67,230,643
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 321065 as yet unmatched pairs. 10411 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr16:69,447,231
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 318951 as yet unmatched pairs. 8296 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr16:72,796,169
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 317119 as yet unmatched pairs. 6459 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr16:84,657,452
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 314770 as yet unmatched pairs. 4110 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr16:88,733,357
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 312612 as yet unmatched pairs. 1952 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 3s. Last read position: chr17:1,354,260
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 310869 as yet unmatched pairs. 124795 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chr17:3,610,697
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 308182 as yet unmatched pairs. 122108 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr17:5,023,862
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 306013 as yet unmatched pairs. 119935 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 3s. Last read position: chr17:7,499,326
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 303782 as yet unmatched pairs. 117704 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr17:8,150,443
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 301785 as yet unmatched pairs. 115706 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 2s. Last read position: chr17:15,651,303
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 299768 as yet unmatched pairs. 113688 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr17:18,305,154
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 297685 as yet unmatched pairs. 111603 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr17:28,633,922
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 295856 as yet unmatched pairs. 109774 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr17:29,638,331
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 293662 as yet unmatched pairs. 107580 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr17:32,350,279
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 291974 as yet unmatched pairs. 105881 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr17:36,254,206
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 290187 as yet unmatched pairs. 104094 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr17:38,183,578
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 288493 as yet unmatched pairs. 102400 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr17:38,918,633
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 286935 as yet unmatched pairs. 100837 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 2s. Last read position: chr17:39,708,493
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 286259 as yet unmatched pairs. 100160 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chr17:39,716,554
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 284245 as yet unmatched pairs. 98146 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr17:39,726,633
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 282806 as yet unmatched pairs. 96707 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 2s. Last read position: chr17:40,348,320
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 279066 as yet unmatched pairs. 92967 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 2s. Last read position: chr17:41,525,219
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 276356 as yet unmatched pairs. 90257 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 2s. Last read position: chr17:42,114,043
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 273683 as yet unmatched pairs. 87584 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr17:42,718,593
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 271419 as yet unmatched pairs. 85320 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 2s. Last read position: chr17:44,190,558
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 269311 as yet unmatched pairs. 83211 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 2s. Last read position: chr17:45,404,050
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 267020 as yet unmatched pairs. 80917 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 2s. Last read position: chr17:47,569,455
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 265655 as yet unmatched pairs. 79551 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 2s. Last read position: chr17:49,298,744
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 263547 as yet unmatched pairs. 77442 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,778
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 262315 as yet unmatched pairs. 76210 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 3s. Last read position: chr17:50,186,676
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 261337 as yet unmatched pairs. 75232 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,029
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 272303 as yet unmatched pairs. 86198 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,945
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 261200 as yet unmatched pairs. 75095 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,617
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 260432 as yet unmatched pairs. 74327 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,233
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 255653 as yet unmatched pairs. 69548 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,685
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 259755 as yet unmatched pairs. 73650 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,328
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 258520 as yet unmatched pairs. 72415 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,433
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 251220 as yet unmatched pairs. 65115 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,664
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 247639 as yet unmatched pairs. 61534 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,973
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 247320 as yet unmatched pairs. 61215 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,402
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 244606 as yet unmatched pairs. 58501 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,789
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 244279 as yet unmatched pairs. 58174 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,593
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 242444 as yet unmatched pairs. 56338 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,185
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 243680 as yet unmatched pairs. 57574 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 3s. Last read position: chr17:50,196,572
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 237297 as yet unmatched pairs. 51191 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,731
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 233658 as yet unmatched pairs. 47552 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,198,461
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 227250 as yet unmatched pairs. 41143 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,562
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 222287 as yet unmatched pairs. 36179 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 2s. Last read position: chr17:50,201,452
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 218962 as yet unmatched pairs. 32854 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 2s. Last read position: chr17:54,937,111
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 214582 as yet unmatched pairs. 28473 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 2s. Last read position: chr17:59,681,721
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 213422 as yet unmatched pairs. 27312 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chr17:61,987,117
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 210740 as yet unmatched pairs. 24630 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chr17:63,821,355
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 208556 as yet unmatched pairs. 22444 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 2s. Last read position: chr17:67,024,903
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 206496 as yet unmatched pairs. 20383 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 2s. Last read position: chr17:68,515,564
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 205843 as yet unmatched pairs. 19730 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 2s. Last read position: chr17:74,439,855
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 202613 as yet unmatched pairs. 16499 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 2s. Last read position: chr17:75,574,655
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 200321 as yet unmatched pairs. 14197 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 2s. Last read position: chr17:76,775,126
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 198020 as yet unmatched pairs. 11896 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 2s. Last read position: chr17:79,795,421
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 195675 as yet unmatched pairs. 9551 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 2s. Last read position: chr17:80,346,688
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 193570 as yet unmatched pairs. 7445 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 2s. Last read position: chr17:81,547,361
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 191195 as yet unmatched pairs. 5070 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 2s. Last read position: chr17:82,054,554
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 188807 as yet unmatched pairs. 2681 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 2s. Last read position: chr17:82,889,679
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 186565 as yet unmatched pairs. 439 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 2s. Last read position: chr18:10,532,711
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 184507 as yet unmatched pairs. 8224 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 2s. Last read position: chr18:26,035,038
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 182570 as yet unmatched pairs. 6286 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chr18:46,123,360
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 180676 as yet unmatched pairs. 4391 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 2s. Last read position: chr18:58,934,505
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 178670 as yet unmatched pairs. 2385 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 2s. Last read position: chr18:79,410,933
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 176591 as yet unmatched pairs. 305 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 3s. Last read position: chr19:1,271,010
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 174323 as yet unmatched pairs. 68395 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 2s. Last read position: chr19:2,520,711
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 171664 as yet unmatched pairs. 65735 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 2s. Last read position: chr19:4,932,750
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 169138 as yet unmatched pairs. 63204 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 2s. Last read position: chr19:6,746,134
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 166912 as yet unmatched pairs. 60978 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 2s. Last read position: chr19:9,757,589
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 164654 as yet unmatched pairs. 58719 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 2s. Last read position: chr19:10,681,016
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 162206 as yet unmatched pairs. 56271 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:25:54s. Time for last 1,000,000: 173s. Last read position: chr19:12,272,997
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 160121 as yet unmatched pairs. 54186 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:25:56s. Time for last 1,000,000: 2s. Last read position: chr19:13,913,492
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 157821 as yet unmatched pairs. 51886 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:25:59s. Time for last 1,000,000: 2s. Last read position: chr19:15,181,081
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 155538 as yet unmatched pairs. 49602 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:26:01s. Time for last 1,000,000: 2s. Last read position: chr19:16,324,840
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 153261 as yet unmatched pairs. 47324 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:26:03s. Time for last 1,000,000: 2s. Last read position: chr19:17,862,130
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 151100 as yet unmatched pairs. 45159 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:26:06s. Time for last 1,000,000: 2s. Last read position: chr19:18,938,808
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 148452 as yet unmatched pairs. 42511 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:26:08s. Time for last 1,000,000: 2s. Last read position: chr19:33,206,623
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 146266 as yet unmatched pairs. 40324 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:26:11s. Time for last 1,000,000: 2s. Last read position: chr19:35,719,505
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 143640 as yet unmatched pairs. 37698 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:26:13s. Time for last 1,000,000: 2s. Last read position: chr19:38,304,450
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 141561 as yet unmatched pairs. 35619 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:26:15s. Time for last 1,000,000: 2s. Last read position: chr19:39,424,807
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 139184 as yet unmatched pairs. 33242 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:26:18s. Time for last 1,000,000: 2s. Last read position: chr19:39,927,865
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 137192 as yet unmatched pairs. 31250 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:26:20s. Time for last 1,000,000: 2s. Last read position: chr19:41,264,767
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 134898 as yet unmatched pairs. 28956 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:26:22s. Time for last 1,000,000: 2s. Last read position: chr19:42,234,593
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 132939 as yet unmatched pairs. 26997 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:26:25s. Time for last 1,000,000: 2s. Last read position: chr19:43,996,343
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 130600 as yet unmatched pairs. 24645 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:26:27s. Time for last 1,000,000: 2s. Last read position: chr19:45,145,859
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 128102 as yet unmatched pairs. 22146 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:26:29s. Time for last 1,000,000: 2s. Last read position: chr19:46,387,204
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 125725 as yet unmatched pairs. 19768 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:26:31s. Time for last 1,000,000: 2s. Last read position: chr19:47,745,749
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 123598 as yet unmatched pairs. 17641 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:26:34s. Time for last 1,000,000: 2s. Last read position: chr19:49,107,637
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 121497 as yet unmatched pairs. 15540 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:26:36s. Time for last 1,000,000: 2s. Last read position: chr19:49,651,653
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 118800 as yet unmatched pairs. 12843 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:26:38s. Time for last 1,000,000: 2s. Last read position: chr19:51,415,986
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 116472 as yet unmatched pairs. 10515 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:26:40s. Time for last 1,000,000: 1s. Last read position: chr19:54,168,472
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 114758 as yet unmatched pairs. 8801 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:26:42s. Time for last 1,000,000: 2s. Last read position: chr19:55,137,188
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 112433 as yet unmatched pairs. 6475 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:26:44s. Time for last 1,000,000: 1s. Last read position: chr19:55,695,147
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 110166 as yet unmatched pairs. 4208 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:26:46s. Time for last 1,000,000: 1s. Last read position: chr19:57,850,048
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 108363 as yet unmatched pairs. 2405 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:26:47s. Time for last 1,000,000: 1s. Last read position: chr19:58,556,774
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 106180 as yet unmatched pairs. 222 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:26:50s. Time for last 1,000,000: 2s. Last read position: chr20:3,578,689
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 103703 as yet unmatched pairs. 24585 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:26:52s. Time for last 1,000,000: 2s. Last read position: chr20:14,327,451
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 101567 as yet unmatched pairs. 22449 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:26:54s. Time for last 1,000,000: 2s. Last read position: chr20:21,755,477
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 99705 as yet unmatched pairs. 20586 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:26:57s. Time for last 1,000,000: 2s. Last read position: chr20:32,780,351
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 97572 as yet unmatched pairs. 18451 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:26:59s. Time for last 1,000,000: 2s. Last read position: chr20:35,548,639
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 95400 as yet unmatched pairs. 16278 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:27:01s. Time for last 1,000,000: 2s. Last read position: chr20:37,518,976
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 93348 as yet unmatched pairs. 14226 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:27:04s. Time for last 1,000,000: 2s. Last read position: chr20:44,202,965
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 91237 as yet unmatched pairs. 12112 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:27:06s. Time for last 1,000,000: 2s. Last read position: chr20:46,725,311
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 89150 as yet unmatched pairs. 10024 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:27:08s. Time for last 1,000,000: 2s. Last read position: chr20:50,891,765
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 87100 as yet unmatched pairs. 7974 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:27:11s. Time for last 1,000,000: 2s. Last read position: chr20:58,898,877
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 85100 as yet unmatched pairs. 5971 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:27:13s. Time for last 1,000,000: 2s. Last read position: chr20:62,362,415
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 82511 as yet unmatched pairs. 3381 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:27:15s. Time for last 1,000,000: 2s. Last read position: chr20:63,688,361
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 80183 as yet unmatched pairs. 1053 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:27:18s. Time for last 1,000,000: 2s. Last read position: chr21:8,216,024
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 78607 as yet unmatched pairs. 14669 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:27:19s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,783
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 77745 as yet unmatched pairs. 13791 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:27:21s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,122
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 76282 as yet unmatched pairs. 12319 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:27:23s. Time for last 1,000,000: 2s. Last read position: chr21:31,266,432
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 74573 as yet unmatched pairs. 10610 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:27:26s. Time for last 1,000,000: 3s. Last read position: chr21:34,886,870
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 72779 as yet unmatched pairs. 8816 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:27:28s. Time for last 1,000,000: 2s. Last read position: chr21:41,399,194
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 70621 as yet unmatched pairs. 6658 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:27:31s. Time for last 1,000,000: 2s. Last read position: chr21:44,228,257
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 68457 as yet unmatched pairs. 4494 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:27:34s. Time for last 1,000,000: 2s. Last read position: chr21:46,003,131
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 66124 as yet unmatched pairs. 2160 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:27:36s. Time for last 1,000,000: 2s. Last read position: chr22:17,100,459
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 63837 as yet unmatched pairs. 28321 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:27:39s. Time for last 1,000,000: 2s. Last read position: chr22:20,668,081
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 61439 as yet unmatched pairs. 25923 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:27:41s. Time for last 1,000,000: 2s. Last read position: chr22:23,767,840
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 59500 as yet unmatched pairs. 23984 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:27:44s. Time for last 1,000,000: 2s. Last read position: chr22:27,854,917
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 57387 as yet unmatched pairs. 21871 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:27:46s. Time for last 1,000,000: 2s. Last read position: chr22:29,287,062
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 55873 as yet unmatched pairs. 20357 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:27:48s. Time for last 1,000,000: 2s. Last read position: chr22:31,128,470
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 52939 as yet unmatched pairs. 17423 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:27:51s. Time for last 1,000,000: 2s. Last read position: chr22:36,282,697
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 50815 as yet unmatched pairs. 15299 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:27:54s. Time for last 1,000,000: 2s. Last read position: chr22:36,935,350
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 48518 as yet unmatched pairs. 13002 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:27:56s. Time for last 1,000,000: 2s. Last read position: chr22:38,291,903
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 46607 as yet unmatched pairs. 11091 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:27:59s. Time for last 1,000,000: 2s. Last read position: chr22:39,511,303
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 44113 as yet unmatched pairs. 8597 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:28:01s. Time for last 1,000,000: 2s. Last read position: chr22:41,637,773
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 42082 as yet unmatched pairs. 6566 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:28:03s. Time for last 1,000,000: 2s. Last read position: chr22:46,363,996
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 40082 as yet unmatched pairs. 4566 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:28:06s. Time for last 1,000,000: 2s. Last read position: chr22:50,283,120
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 37539 as yet unmatched pairs. 2023 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:28:08s. Time for last 1,000,000: 2s. Last read position: chrX:2,726,298
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 34932 as yet unmatched pairs. 28311 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:28:11s. Time for last 1,000,000: 2s. Last read position: chrX:13,379,092
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 32890 as yet unmatched pairs. 26269 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:28:13s. Time for last 1,000,000: 2s. Last read position: chrX:24,057,680
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 31228 as yet unmatched pairs. 24590 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:28:16s. Time for last 1,000,000: 2s. Last read position: chrX:41,184,410
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 29396 as yet unmatched pairs. 22758 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:28:18s. Time for last 1,000,000: 2s. Last read position: chrX:47,585,207
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 27165 as yet unmatched pairs. 20526 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:28:21s. Time for last 1,000,000: 2s. Last read position: chrX:53,086,028
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 24998 as yet unmatched pairs. 18359 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:28:23s. Time for last 1,000,000: 2s. Last read position: chrX:54,810,898
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 22968 as yet unmatched pairs. 16329 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:28:25s. Time for last 1,000,000: 2s. Last read position: chrX:71,290,671
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 20936 as yet unmatched pairs. 14296 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:28:28s. Time for last 1,000,000: 2s. Last read position: chrX:77,620,485
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 19092 as yet unmatched pairs. 12452 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:28:31s. Time for last 1,000,000: 2s. Last read position: chrX:101,018,999
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 17040 as yet unmatched pairs. 10399 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:28:33s. Time for last 1,000,000: 2s. Last read position: chrX:108,621,828
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 15193 as yet unmatched pairs. 8552 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:28:35s. Time for last 1,000,000: 2s. Last read position: chrX:129,465,702
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 13059 as yet unmatched pairs. 6418 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:28:38s. Time for last 1,000,000: 2s. Last read position: chrX:149,933,727
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 11151 as yet unmatched pairs. 4510 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:28:40s. Time for last 1,000,000: 2s. Last read position: chrX:154,357,610
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 8957 as yet unmatched pairs. 2315 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:28:43s. Time for last 1,000,000: 2s. Last read position: chrX:156,020,959
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 6670 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:28:44s. Time for last 1,000,000: 1s. Last read position: GL000220.1:151,977
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 4632 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:28:46s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,019
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 3468 as yet unmatched pairs. 3409 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:28:48s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,427
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 157 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 580502078 records. 0 pairs never matched.
INFO 2026-06-08 09:07:27 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138080; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:07:27 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:07:32 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:07:32 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder Large duplicate set. size = 3706
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,049
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,047
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,267
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder Large duplicate set. size = 1754
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,344
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,186
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder Large duplicate set. size = 1459
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,645
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder Large duplicate set. size = 1309
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,646
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder Large duplicate set. size = 1651
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,654
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 09:07:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,172
INFO 2026-06-08 09:07:54 OpticalDuplicateFinder Large duplicate set. size = 1325
INFO 2026-06-08 09:07:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,336
INFO 2026-06-08 09:07:55 OpticalDuplicateFinder Large duplicate set. size = 1685
INFO 2026-06-08 09:07:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,990
INFO 2026-06-08 09:07:56 OpticalDuplicateFinder Large duplicate set. size = 1341
INFO 2026-06-08 09:07:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,975
INFO 2026-06-08 09:07:56 OpticalDuplicateFinder Large duplicate set. size = 1527
INFO 2026-06-08 09:07:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,581
INFO 2026-06-08 09:07:56 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 09:07:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,500
INFO 2026-06-08 09:07:56 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:07:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,629
INFO 2026-06-08 09:07:57 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 09:07:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,973
INFO 2026-06-08 09:07:57 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 09:07:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,535
INFO 2026-06-08 09:07:57 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:07:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,925
INFO 2026-06-08 09:07:58 OpticalDuplicateFinder Large duplicate set. size = 1221
INFO 2026-06-08 09:07:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,995
INFO 2026-06-08 09:07:59 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:07:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,194
INFO 2026-06-08 09:08:13 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:08:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,980
INFO 2026-06-08 09:08:13 OpticalDuplicateFinder Large duplicate set. size = 1414
INFO 2026-06-08 09:08:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,053
INFO 2026-06-08 09:08:13 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:08:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,757
INFO 2026-06-08 09:08:13 OpticalDuplicateFinder Large duplicate set. size = 1524
INFO 2026-06-08 09:08:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,173
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder Large duplicate set. size = 1598
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,842
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder Large duplicate set. size = 1577
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,937
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder Large duplicate set. size = 1418
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,965
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder Large duplicate set. size = 2723
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,079
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,140
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder Large duplicate set. size = 1360
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,653
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:08:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,832
INFO 2026-06-08 09:08:22 OpticalDuplicateFinder Large duplicate set. size = 1367
INFO 2026-06-08 09:08:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,518
INFO 2026-06-08 09:09:08 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 09:09:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,053
INFO 2026-06-08 09:09:10 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 09:09:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,311
INFO 2026-06-08 09:09:10 OpticalDuplicateFinder Large duplicate set. size = 1517
INFO 2026-06-08 09:09:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,498
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1809
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,970
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1705
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,661
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,678
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,317
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1771
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,454
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,859
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1187
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,209
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1736
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,495
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,871
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1213
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,932
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 09:09:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,364
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1389
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,921
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,734
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,926
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1290
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,572
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1714
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,228
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,563
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,330
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,238
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1261
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,128
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,547
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1163
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,346
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder Large duplicate set. size = 1373
INFO 2026-06-08 09:09:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,582
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,889
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 2017
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,900
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,749
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,415
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,914
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1368
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,545
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,922
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1215
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,727
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1275
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,594
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1383
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,086
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1624
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,735
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,144
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,103
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1150
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,087
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,764
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1238
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,491
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,978
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,674
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1446
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,949
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,387
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder Large duplicate set. size = 2360
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,455
INFO 2026-06-08 09:09:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,208
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,582
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,454
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,629
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,605
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,716
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1311
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,992
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1260
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,627
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,927
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,184
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 2155
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,585
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,205
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1383
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,793
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1615
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,685
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1720
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,072
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1847
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,757
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,027
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 2902
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,348
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,803
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1031
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,089
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,440
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 2358
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,331
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,603
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,255
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1562
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,108
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 2380
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,494
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,689
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,406
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,123
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,452
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1279
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,714
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,906
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1292
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,625
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,892
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1552
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,442
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 3050
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,906
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,272
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,108
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1764
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,392
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 2667
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,458
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,799
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 2814
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,135
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,688
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1878
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,731
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1419
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,989
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,566
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,980
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,161
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 2476
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,819
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,167
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1358
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,852
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1390
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,195
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,742
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1425
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,507
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1389
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,282
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 2002
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,862
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,410
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,104
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,562
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:09:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,261
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,221
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder Large duplicate set. size = 2108
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,828
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,792
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,255
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder Large duplicate set. size = 1252
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,850
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,525
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder Large duplicate set. size = 2267
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,413
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,752
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,049
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder Large duplicate set. size = 1081
INFO 2026-06-08 09:09:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,970
INFO 2026-06-08 09:09:32 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:09:32 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:10:51 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:10:58 MarkDuplicates After generateDuplicateIndexes freeMemory: 203886096; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:10:58 MarkDuplicates Marking 372535830 records as duplicates.
INFO 2026-06-08 09:10:58 MarkDuplicates Found 8693646 optical duplicate clusters.
INFO 2026-06-08 09:10:58 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:11:24 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:26s. Time for last 10,000,000: 26s. Last read position: chr1:35,448,200
INFO 2026-06-08 09:11:49 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 24s. Last read position: chr1:116,600,105
INFO 2026-06-08 09:12:12 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:14s. Time for last 10,000,000: 23s. Last read position: chr1:151,562,656
INFO 2026-06-08 09:12:36 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 24s. Last read position: chr1:161,543,055
INFO 2026-06-08 09:13:00 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:02:02s. Time for last 10,000,000: 24s. Last read position: chr1:207,887,507
INFO 2026-06-08 09:13:25 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:27s. Time for last 10,000,000: 24s. Last read position: chr2:24,758,045
INFO 2026-06-08 09:13:48 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:50s. Time for last 10,000,000: 22s. Last read position: chr2:74,464,908
INFO 2026-06-08 09:14:11 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 23s. Last read position: chr2:151,640,405
INFO 2026-06-08 09:14:35 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:03:37s. Time for last 10,000,000: 23s. Last read position: chr2:178,727,130
INFO 2026-06-08 09:14:59 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 23s. Last read position: chr2:215,372,293
INFO 2026-06-08 09:15:22 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:04:24s. Time for last 10,000,000: 23s. Last read position: chr2:215,944,870
INFO 2026-06-08 09:15:45 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:04:47s. Time for last 10,000,000: 22s. Last read position: chr3:39,329,807
INFO 2026-06-08 09:16:08 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 23s. Last read position: chr3:105,720,110
INFO 2026-06-08 09:16:30 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:05:31s. Time for last 10,000,000: 21s. Last read position: chr3:184,301,626
INFO 2026-06-08 09:16:52 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:05:54s. Time for last 10,000,000: 22s. Last read position: chr4:78,911,066
INFO 2026-06-08 09:17:15 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:06:17s. Time for last 10,000,000: 22s. Last read position: chr5:31,406,869
INFO 2026-06-08 09:17:38 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:06:40s. Time for last 10,000,000: 23s. Last read position: chr5:113,013,336
INFO 2026-06-08 09:18:02 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:07:04s. Time for last 10,000,000: 23s. Last read position: chr5:150,403,238
INFO 2026-06-08 09:18:24 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:07:26s. Time for last 10,000,000: 22s. Last read position: chr6:17,393,720
INFO 2026-06-08 09:18:47 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:07:49s. Time for last 10,000,000: 22s. Last read position: chr6:33,455,718
INFO 2026-06-08 09:19:10 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:08:12s. Time for last 10,000,000: 23s. Last read position: chr6:149,683,327
INFO 2026-06-08 09:19:34 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:08:36s. Time for last 10,000,000: 23s. Last read position: chr7:44,799,798
INFO 2026-06-08 09:19:52 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:08:54s. Time for last 10,000,000: 18s. Last read position: chr7:100,220,963
INFO 2026-06-08 09:20:12 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 19s. Last read position: chr8:9,580,203
INFO 2026-06-08 09:20:36 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:09:38s. Time for last 10,000,000: 24s. Last read position: chr8:100,943,655
INFO 2026-06-08 09:20:56 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:09:58s. Time for last 10,000,000: 20s. Last read position: chr9:463,649
INFO 2026-06-08 09:21:20 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 23s. Last read position: chr9:125,020,672
INFO 2026-06-08 09:21:44 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:10:46s. Time for last 10,000,000: 23s. Last read position: chr10:31,810,639
INFO 2026-06-08 09:22:07 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 23s. Last read position: chr10:101,006,753
INFO 2026-06-08 09:22:30 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:11:32s. Time for last 10,000,000: 23s. Last read position: chr11:17,169,346
INFO 2026-06-08 09:22:54 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:11:56s. Time for last 10,000,000: 23s. Last read position: chr11:64,197,363
INFO 2026-06-08 09:23:17 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:12:18s. Time for last 10,000,000: 22s. Last read position: chr11:78,112,750
INFO 2026-06-08 09:23:41 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 23s. Last read position: chr12:9,112,159
INFO 2026-06-08 09:24:04 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:13:06s. Time for last 10,000,000: 23s. Last read position: chr12:40,547,149
INFO 2026-06-08 09:24:29 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:13:31s. Time for last 10,000,000: 24s. Last read position: chr12:57,108,197
INFO 2026-06-08 09:24:56 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 26s. Last read position: chr12:118,239,243
INFO 2026-06-08 09:25:20 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:14:22s. Time for last 10,000,000: 24s. Last read position: chr13:110,436,280
INFO 2026-06-08 09:25:44 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:14:46s. Time for last 10,000,000: 24s. Last read position: chr14:69,771,208
INFO 2026-06-08 09:26:09 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:15:11s. Time for last 10,000,000: 24s. Last read position: chr15:32,732,698
INFO 2026-06-08 09:26:40 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:15:42s. Time for last 10,000,000: 31s. Last read position: chr15:82,372,571
INFO 2026-06-08 09:27:05 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:16:07s. Time for last 10,000,000: 24s. Last read position: chr16:11,733,950
INFO 2026-06-08 09:27:31 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 25s. Last read position: chr16:22,532,111
INFO 2026-06-08 09:27:56 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:16:58s. Time for last 10,000,000: 25s. Last read position: chr16:57,039,810
INFO 2026-06-08 09:28:20 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:17:22s. Time for last 10,000,000: 24s. Last read position: chr17:8,150,443
INFO 2026-06-08 09:28:43 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:17:45s. Time for last 10,000,000: 23s. Last read position: chr17:39,716,554
INFO 2026-06-08 09:29:07 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:18:09s. Time for last 10,000,000: 23s. Last read position: chr17:50,185,778
INFO 2026-06-08 09:29:32 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:18:34s. Time for last 10,000,000: 25s. Last read position: chr17:50,193,973
INFO 2026-06-08 09:29:57 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:18:59s. Time for last 10,000,000: 25s. Last read position: chr17:54,937,111
INFO 2026-06-08 09:30:21 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:19:23s. Time for last 10,000,000: 23s. Last read position: chr17:80,346,688
INFO 2026-06-08 09:30:45 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:19:47s. Time for last 10,000,000: 24s. Last read position: chr19:2,520,711
INFO 2026-06-08 09:31:08 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:20:10s. Time for last 10,000,000: 22s. Last read position: chr19:18,938,808
INFO 2026-06-08 09:31:27 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:20:29s. Time for last 10,000,000: 19s. Last read position: chr19:46,387,204
INFO 2026-06-08 09:31:45 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:20:47s. Time for last 10,000,000: 17s. Last read position: chr20:3,578,689
INFO 2026-06-08 09:32:06 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:21:08s. Time for last 10,000,000: 20s. Last read position: chr20:62,362,415
INFO 2026-06-08 09:32:31 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:21:33s. Time for last 10,000,000: 25s. Last read position: chr22:17,100,459
INFO 2026-06-08 09:32:55 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:21:57s. Time for last 10,000,000: 23s. Last read position: chr22:41,637,773
INFO 2026-06-08 09:33:14 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:22:15s. Time for last 10,000,000: 18s. Last read position: chrX:71,290,671
INFO 2026-06-08 09:33:31 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:22:33s. Time for last 10,000,000: 17s. Last read position: KI270733.1:177,427
INFO 2026-06-08 09:33:42 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:33:42 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:33:42 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:33:42 MarkDuplicates Before output close freeMemory: 203852144; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:33:42 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:33:42 MarkDuplicates After output close freeMemory: 104092832; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:33:42 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 55.67 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory