Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/4ac7fe8d3e6560c211d575dbb93030/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/b7396878b37a7816b2fda50027ef9c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/b7396878b37a7816b2fda50027ef9c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/2bc0305f06cfe60552ae53a0652610/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 205924620
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	205924620
Known Splicing Events:	203688136
Partial Novel Splicing Events:	1070844
Novel Splicing Events:	1030991
Filtered Splicing Events:	134649

Total splicing  Junctions:	440869
Known Splicing Junctions:	234984
Partial Novel Splicing Junctions:	94138
Novel Splicing Junctions:	111747

===================================================================
Create BED file ...
Create Interact file ...