Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/040caa91d2c1aef73a23ab098cd0b4/BVT_FFPE_TRNA_utn_07_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/d1b2032beda29c70ad959fb207161e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/d1b2032beda29c70ad959fb207161e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/7ec58e33ba019e719c6ac95a33feac/BVT_FFPE_TRNA_utn_07_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory